Wall clock time and date at job start Tue Mar 31 2020 03:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.53006 * 117.49597 * 214.33538 * 2 1 3 5 5 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 6 6 H 1.09002 * 117.49910 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.50247 * 214.97952 * 5 2 1 8 8 O 1.21287 * 119.99816 * 359.97438 * 7 5 2 9 9 N 1.34774 * 120.00330 * 179.97438 * 7 5 2 10 10 C 1.46505 * 119.99973 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.46818 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.96151 * 285.33298 * 11 10 9 13 13 C 1.53943 * 113.75867 * 153.68807 * 11 10 9 14 14 C 1.53931 * 86.34265 * 221.96505 * 13 11 10 15 15 N 1.47966 * 113.75885 * 56.98384 * 11 10 9 16 16 C 1.46901 * 110.99938 * 251.89321 * 15 11 10 17 17 C 1.50697 * 109.46761 * 169.99819 * 16 15 11 18 18 O 1.21283 * 120.00412 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99384 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99228 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00471 * 359.97438 * 20 19 17 22 22 C 1.38959 * 119.99456 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00222 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99727 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47397 * 59.99901 * 24 22 20 26 26 H 1.48501 * 109.46940 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46944 * 299.99692 * 24 22 20 28 28 H 1.09004 * 109.47489 * 154.27815 * 1 2 3 29 29 H 1.09006 * 109.47230 * 274.27603 * 1 2 3 30 30 H 1.09001 * 109.47457 * 34.27664 * 1 2 3 31 31 H 1.08990 * 117.50086 * 359.97438 * 4 2 1 32 32 H 1.09004 * 117.49623 * 145.02417 * 4 2 1 33 33 H 0.97002 * 119.99859 * 0.02562 * 9 7 5 34 34 H 1.08994 * 109.47052 * 300.00199 * 10 9 7 35 35 H 1.09003 * 109.46943 * 60.00432 * 10 9 7 36 36 H 1.09004 * 113.72815 * 336.31989 * 13 11 10 37 37 H 1.09003 * 113.73430 * 107.49557 * 13 11 10 38 38 H 1.08996 * 113.75957 * 138.03570 * 14 13 11 39 39 H 1.09001 * 113.75655 * 269.29641 * 14 13 11 40 40 H 1.09000 * 109.47098 * 290.00450 * 16 15 11 41 41 H 1.09001 * 109.46668 * 50.00164 * 16 15 11 42 42 H 0.96989 * 120.00579 * 0.02562 * 19 17 16 43 43 H 0.96993 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2363 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7645 6 1 1.6112 -1.8588 1.2678 7 6 3.5292 -0.7818 1.4604 8 8 3.9720 0.3458 1.4010 9 7 4.1935 -1.7310 2.1490 10 6 5.4506 -1.4010 2.8251 11 6 5.9941 -2.6468 3.5275 12 1 5.4450 -2.8967 4.4354 13 6 7.5227 -2.6389 3.7097 14 6 7.4800 -4.1226 3.3021 15 7 6.2041 -3.7979 2.6219 16 6 5.1991 -4.8432 2.8574 17 6 5.2876 -5.8797 1.7671 18 8 6.1075 -5.7599 0.8814 19 7 4.4556 -6.9401 1.7763 20 6 4.5365 -7.8833 0.7847 21 1 5.2665 -7.7766 -0.0040 22 6 3.6784 -8.9763 0.7938 23 7 2.7897 -9.1059 1.7532 24 14 3.7890 -10.2619 -0.5568 25 1 5.1440 -10.8696 -0.5521 26 1 2.7717 -11.3174 -0.3200 27 1 3.5388 -9.6203 -1.8726 28 1 -0.3634 -0.9258 -0.4460 29 1 -0.3634 0.0766 1.0249 30 1 -0.3634 0.8492 -0.5788 31 1 1.6111 -1.8582 -1.2687 32 1 3.1715 -0.8747 -1.2687 33 1 3.8396 -2.6330 2.1962 34 1 6.1767 -1.0512 2.0914 35 1 5.2721 -0.6177 3.5618 36 1 8.0462 -2.0027 2.9959 37 1 7.8410 -2.4738 4.7390 38 1 8.2799 -4.4143 2.6215 39 1 7.3674 -4.8061 4.1437 40 1 5.3842 -5.3143 3.8227 41 1 4.2043 -4.3977 2.8553 42 1 3.7997 -7.0358 2.4844 43 1 2.1910 -9.8690 1.7598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699625747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:49 Heat of formation + Delta-G solvation = -41.955511 kcal Electronic energy + Delta-G solvation = -23800.170048 eV Core-core repulsion = 20267.031459 eV Total energy + Delta-G solvation = -3533.138589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50584 -40.74279 -39.53533 -37.80701 -35.94018 -35.55422 -33.30540 -32.00965 -30.20542 -29.08405 -27.49679 -25.44073 -25.28926 -23.62632 -21.84103 -21.18771 -21.05986 -20.44303 -19.89778 -18.53788 -17.74199 -17.24026 -17.00268 -16.50284 -16.45678 -16.16417 -15.78280 -15.56354 -15.18245 -15.08811 -14.67148 -14.17929 -14.16025 -13.93008 -13.68946 -13.51521 -13.11464 -12.95873 -12.92597 -12.61099 -12.43617 -12.36194 -12.30621 -12.13770 -11.87256 -11.77537 -11.48240 -11.35035 -11.10818 -10.82075 -10.36023 -10.09910 -9.99211 -9.62978 -8.45474 -5.93596 1.39508 1.41830 1.44826 1.51959 2.04897 2.09347 2.29280 2.74875 2.84671 3.20688 3.34481 3.57891 3.67615 3.75779 3.79414 3.84265 4.03189 4.15251 4.18303 4.27644 4.34589 4.39671 4.41622 4.51526 4.64197 4.72000 4.82687 4.84814 4.87387 4.93104 4.98257 5.01018 5.18168 5.22650 5.32855 5.41184 5.42079 5.51290 5.93014 6.11448 6.46555 6.62835 7.15220 7.17050 7.58808 8.15960 8.71518 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004349 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.042280 B = 6437.201405 C = 8503.649434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.150 4.150 5 C -0.202 4.202 6 H 0.141 0.859 7 C 0.538 3.462 8 O -0.585 6.585 9 N -0.713 5.713 10 C 0.142 3.858 11 C 0.019 3.981 12 H 0.111 0.889 13 C -0.114 4.114 14 C 0.002 3.998 15 N -0.477 5.477 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.619 6.619 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.988 3.012 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.405 0.595 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.396 0.604 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 13.953 6.372 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 H 0.118 0.882 4 C -0.187 4.187 5 C -0.223 4.223 6 H 0.158 0.842 7 C 0.326 3.674 8 O -0.467 6.467 9 N -0.363 5.363 10 C 0.018 3.982 11 C -0.091 4.091 12 H 0.129 0.871 13 C -0.153 4.153 14 C -0.126 4.126 15 N -0.201 5.201 16 C -0.109 4.109 17 C 0.230 3.770 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.560 5.560 24 Si 0.812 3.188 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.102 0.898 33 H 0.241 0.759 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.729 14.742 5.089 15.692 hybrid contribution -0.330 -1.677 0.399 1.755 sum -2.059 13.066 5.488 14.320 Atomic orbital electron populations 1.21417 0.90179 1.03224 1.02841 1.22395 0.96583 0.93803 1.00523 0.88154 1.23158 1.02974 1.02137 0.90469 1.22404 0.97108 1.06433 0.96357 0.84160 1.20084 0.85345 0.84165 0.77795 1.90637 1.70124 1.22678 1.63232 1.45894 1.24369 1.13432 1.52572 1.21329 0.84628 0.96337 0.95861 1.23882 0.98519 0.91331 0.95321 0.87142 1.23248 0.93164 0.95026 1.03816 1.23952 0.93285 0.98062 0.97337 1.68425 1.02700 1.04414 1.44533 1.22409 0.98768 0.93373 0.96342 1.20781 0.83360 0.83995 0.88909 1.90503 1.40551 1.78395 1.40970 1.41920 1.33109 1.20616 1.25552 1.19567 1.18602 1.02352 1.05699 0.90720 1.25935 0.95058 0.99775 1.00101 1.69645 1.20933 1.31853 1.33540 0.85069 0.78174 0.77535 0.78057 1.19909 1.19409 1.19868 0.91453 0.91376 0.90611 0.86127 0.89754 0.75879 0.92785 0.89775 0.89217 0.87390 0.91401 0.89932 0.89768 0.87883 0.77005 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 10.19 71.98 0.73 -1.10 16 2 C -0.11 -2.43 5.92 -10.79 -0.06 -2.49 16 3 H 0.10 2.44 7.67 -2.39 -0.02 2.43 16 4 C -0.15 -3.42 9.88 30.60 0.30 -3.12 16 5 C -0.20 -4.77 5.91 -11.54 -0.07 -4.84 16 6 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 7 C 0.54 15.59 7.61 87.66 0.67 16.26 16 8 O -0.59 -20.66 16.26 -3.05 -0.05 -20.71 16 9 N -0.71 -18.47 5.48 -463.06 -2.54 -21.01 16 10 C 0.14 3.35 5.82 86.38 0.50 3.85 16 11 C 0.02 0.39 3.41 45.02 0.15 0.54 16 12 H 0.11 1.75 7.92 -2.39 -0.02 1.73 16 13 C -0.11 -2.10 7.84 31.24 0.25 -1.86 16 14 C 0.00 0.06 7.96 86.36 0.69 0.74 16 15 N -0.48 -14.21 5.28 -885.11 -4.68 -18.89 16 16 C 0.02 0.72 5.09 85.56 0.44 1.16 16 17 C 0.44 20.48 7.83 87.66 0.69 21.16 16 18 O -0.62 -34.41 16.01 -3.04 -0.05 -34.46 16 19 N -0.57 -28.57 5.29 -306.98 -1.62 -30.19 16 20 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 21 H 0.07 4.51 7.16 -2.91 -0.02 4.49 16 22 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 23 N -0.92 -48.37 13.05 21.67 0.28 -48.09 16 24 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 H 0.07 0.94 7.90 -2.39 -0.02 0.92 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 2.36 8.05 -2.39 -0.02 2.34 16 32 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.41 10.01 6.47 -92.71 -0.60 9.41 16 34 H 0.05 1.49 7.88 -2.39 -0.02 1.47 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.74 7.92 -2.38 -0.02 1.72 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 1.88 7.48 -2.39 -0.02 1.86 16 40 H 0.08 2.26 7.38 -2.39 -0.02 2.25 16 41 H 0.10 2.75 6.42 -2.39 -0.02 2.73 16 42 H 0.40 18.50 7.90 -92.72 -0.73 17.77 16 43 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -73.18 360.33 -1.37 -74.55 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.30 Total: 41.84 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.56 Total: 12.51 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -8.56 Total: -118.18 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.10 Total: -55.17 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -73.18 -1.37 -74.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699625747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.594 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds