Wall clock time and date at job start Tue Mar 31 2020 04:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 C 1.52999 * 109.47266 * 240.00103 * 2 1 3 5 5 C 1.50705 * 109.46834 * 65.00289 * 4 2 1 6 6 N 1.34784 * 119.99664 * 179.97438 * 5 4 2 7 7 O 1.21271 * 120.00436 * 359.97438 * 5 4 2 8 8 C 1.50693 * 109.47164 * 120.00060 * 2 1 3 9 9 O 1.21280 * 120.00404 * 119.99787 * 8 2 1 10 10 N 1.34776 * 120.00013 * 300.00465 * 8 2 1 11 11 C 1.46502 * 119.99995 * 179.97438 * 10 8 2 12 12 C 1.50698 * 109.47297 * 179.97438 * 11 10 8 13 13 C 1.29458 * 117.69505 * 94.99943 * 12 11 10 14 14 C 1.50322 * 123.64902 * 180.86340 * 13 12 11 15 15 N 1.47002 * 109.16929 * 349.01566 * 14 13 12 16 16 C 1.36931 * 121.37924 * 222.97278 * 15 14 13 17 17 H 1.08009 * 120.00315 * 155.97820 * 16 15 14 18 18 C 1.38812 * 120.00221 * 335.97305 * 16 15 14 19 19 N 1.31616 * 119.99802 * 344.51391 * 18 16 15 20 20 Si 1.86801 * 120.00462 * 164.51313 * 18 16 15 21 21 H 1.48500 * 109.46871 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47100 * 119.99821 * 20 18 16 23 23 H 1.48494 * 109.47171 * 240.00202 * 20 18 16 24 24 C 1.47342 * 117.24730 * 42.95143 * 15 14 13 25 25 C 1.49977 * 117.69409 * 274.74036 * 12 11 10 26 26 H 1.08996 * 109.47786 * 300.00089 * 1 2 3 27 27 H 1.09009 * 109.47229 * 59.99814 * 1 2 3 28 28 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47037 * 305.00286 * 4 2 1 30 30 H 1.08994 * 109.47174 * 184.99721 * 4 2 1 31 31 H 0.96998 * 119.99894 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99635 * 359.72709 * 6 5 4 33 33 H 0.97001 * 120.00259 * 359.97438 * 10 8 2 34 34 H 1.09001 * 109.47297 * 299.99626 * 11 10 8 35 35 H 1.09002 * 109.47485 * 60.00005 * 11 10 8 36 36 H 1.07993 * 118.17513 * 0.87853 * 13 12 11 37 37 H 1.09000 * 109.52576 * 108.92794 * 14 13 12 38 38 H 1.08999 * 109.51711 * 229.11505 * 14 13 12 39 39 H 0.96998 * 120.00431 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.78042 * 57.81029 * 24 15 14 41 41 H 1.09003 * 109.78031 * 178.61371 * 24 15 14 42 42 H 1.09002 * 109.31198 * 281.29119 * 25 12 11 43 43 H 1.09000 * 109.31160 * 40.71451 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 7 1.9854 -0.3912 -3.7002 7 8 1.0110 1.0870 -2.3633 8 6 2.0323 -0.7104 1.2304 9 8 2.7295 -1.6965 1.1192 10 7 1.7066 -0.2500 2.4545 11 6 2.1945 -0.9410 3.6507 12 6 1.6927 -0.2302 4.8812 13 6 0.6066 -0.6717 5.4301 14 6 -0.0219 -0.0538 6.6478 15 7 0.9139 0.9164 7.2344 16 6 1.1125 0.9872 8.5874 17 1 2.0339 1.3939 8.9774 18 6 0.1296 0.5363 9.4577 19 7 -1.0936 0.3289 9.0184 20 14 0.5428 0.2240 11.2525 21 1 1.9758 0.5318 11.4912 22 1 -0.2996 1.0931 12.1128 23 1 0.2807 -1.2004 11.5802 24 6 1.6297 1.8092 6.3062 25 6 2.4900 0.9350 5.3869 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -1.7197 -1.2952 30 1 3.1262 -0.7994 -1.2056 31 1 1.7285 0.1096 -4.4901 32 1 2.4930 -1.2128 -3.7905 33 1 1.1492 0.5388 2.5436 34 1 1.8308 -1.9685 3.6505 35 1 3.2845 -0.9414 3.6509 36 1 0.1255 -1.5320 4.9889 37 1 -0.9433 0.4547 6.3640 38 1 -0.2443 -0.8322 7.3776 39 1 -1.7806 0.0142 9.6266 40 1 0.9124 2.3784 5.7150 41 1 2.2682 2.4906 6.8685 42 1 3.3552 0.5675 5.9388 43 1 2.8322 1.5318 4.5414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755890440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:40 Heat of formation + Delta-G solvation = -51.611403 kcal Electronic energy + Delta-G solvation = -23521.739117 eV Core-core repulsion = 19988.181818 eV Total energy + Delta-G solvation = -3533.557299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41423 -39.35022 -37.78122 -34.98051 -34.37023 -34.01951 -32.82480 -30.87699 -29.74096 -28.21998 -26.92575 -24.69994 -23.46500 -22.72346 -21.18617 -20.87710 -19.87044 -17.94479 -17.68633 -17.49222 -16.37585 -16.02899 -15.86136 -15.59016 -15.14122 -15.00267 -14.34019 -13.97722 -13.83838 -13.62819 -13.42058 -13.27948 -12.98083 -12.76014 -12.25680 -12.17467 -12.04936 -11.58201 -11.47320 -11.34691 -11.30563 -10.93226 -10.76354 -10.40961 -10.30105 -10.24172 -10.05721 -9.84599 -9.78622 -9.58806 -8.96274 -8.70294 -8.07448 -6.76775 -5.81813 -3.20610 2.31304 2.56224 2.64394 3.11733 3.36607 3.44410 3.46456 3.64831 4.32057 4.47790 4.65919 4.72294 4.88225 5.12284 5.21877 5.33579 5.37126 5.38182 5.43711 5.56881 5.69668 5.81013 5.83554 5.93254 6.05639 6.09699 6.15336 6.31636 6.41844 6.44956 6.53023 6.71805 6.85372 6.93859 7.14836 7.23806 7.30830 7.58210 7.71404 7.80669 7.91508 8.23197 8.35910 9.17452 9.80156 10.38082 11.28712 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.002580 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.756098 B =10851.565145 C =10972.377122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 H 0.105 0.895 4 C -0.124 4.124 5 C 0.518 3.482 6 N -0.858 5.858 7 O -0.540 6.540 8 C 0.515 3.485 9 O -0.552 6.552 10 N -0.717 5.717 11 C 0.157 3.843 12 C -0.167 4.167 13 C -0.124 4.124 14 C 0.194 3.806 15 N -0.596 5.596 16 C -0.245 4.245 17 H 0.069 0.931 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.144 3.856 25 C -0.090 4.090 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -2.482 -22.249 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.164 4.164 5 C 0.304 3.696 6 N -0.422 5.422 7 O -0.417 6.417 8 C 0.301 3.699 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.034 3.966 12 C -0.168 4.168 13 C -0.145 4.145 14 C 0.069 3.931 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.017 3.983 25 C -0.129 4.129 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.231 0.769 32 H 0.231 0.769 33 H 0.238 0.762 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.243 -2.606 -21.902 22.671 hybrid contribution 0.045 -0.187 0.563 0.595 sum 5.288 -2.794 -21.339 22.162 Atomic orbital electron populations 1.21916 0.92232 1.02490 1.04169 1.21003 0.98405 1.00935 0.91329 0.87699 1.21452 1.03915 1.00098 0.90952 1.20725 0.78301 0.85320 0.85303 1.43898 1.60119 1.29828 1.08311 1.90727 1.39639 1.24617 1.86725 1.20577 0.80010 0.84525 0.84812 1.90677 1.38611 1.26667 1.87048 1.46190 1.53136 1.32071 1.05373 1.20461 0.98834 0.95125 0.82147 1.20501 0.98694 1.00506 0.97063 1.23283 0.95263 0.97593 0.98316 1.19761 0.90542 0.92715 0.90113 1.44138 1.48912 1.36622 1.02200 1.19226 0.99027 1.38209 0.80972 0.91302 1.24995 0.94704 1.02251 0.98036 1.70013 1.00568 1.50294 1.34628 0.86178 0.77763 0.77660 0.84936 1.20302 1.21749 1.21581 1.20995 0.93905 0.91721 0.91684 1.20787 0.98407 0.95161 0.98540 0.91848 0.89692 0.92588 0.88044 0.87887 0.76912 0.76936 0.76248 0.91700 0.91636 0.88801 0.94081 0.88884 0.93641 0.95824 0.92459 0.91736 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.83 37.15 0.33 -1.14 16 2 C -0.09 -0.95 2.37 -91.78 -0.22 -1.17 16 3 H 0.10 1.04 7.96 -51.93 -0.41 0.63 16 4 C -0.12 -1.03 4.52 -27.88 -0.13 -1.16 16 5 C 0.52 4.43 7.82 -10.98 -0.09 4.35 16 6 N -0.86 -4.12 8.87 31.22 0.28 -3.84 16 7 O -0.54 -6.62 14.80 5.56 0.08 -6.54 16 8 C 0.51 6.56 7.15 -10.99 -0.08 6.48 16 9 O -0.55 -8.68 15.92 5.56 0.09 -8.59 16 10 N -0.72 -9.12 5.44 -61.47 -0.33 -9.46 16 11 C 0.16 2.31 5.66 -5.19 -0.03 2.28 16 12 C -0.17 -2.81 5.22 -100.99 -0.53 -3.34 16 13 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 14 C 0.19 4.52 5.23 -5.10 -0.03 4.49 16 15 N -0.60 -14.70 3.01 -173.56 -0.52 -15.22 16 16 C -0.24 -6.65 9.71 -15.06 -0.15 -6.80 16 17 H 0.07 1.84 7.88 -52.48 -0.41 1.43 16 18 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 19 N -0.91 -26.00 11.08 55.49 0.61 -25.39 16 20 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.14 2.91 6.59 -3.43 -0.02 2.89 16 25 C -0.09 -1.54 5.95 -28.08 -0.17 -1.71 16 26 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 27 H 0.08 0.90 5.95 -51.92 -0.31 0.59 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.81 7.95 -51.93 -0.41 0.40 16 31 H 0.40 1.59 8.93 -40.82 -0.36 1.22 16 32 H 0.40 0.86 8.83 -40.82 -0.36 0.50 16 33 H 0.40 4.62 7.88 -40.82 -0.32 4.30 16 34 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 35 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.09 1.58 7.73 -52.49 -0.41 1.17 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -33.05 351.65 -7.69 -40.73 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.64 Total: 4.04 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.53 Total: 2.38 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.04 Total: -53.91 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.17 Total: -15.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.05 -7.69 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755890440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.879 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds