Wall clock time and date at job start Tue Mar 31 2020 04:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 C 1.52999 * 109.47266 * 240.00103 * 2 1 3 5 5 C 1.50705 * 109.46834 * 65.00289 * 4 2 1 6 6 N 1.34784 * 119.99664 * 179.97438 * 5 4 2 7 7 O 1.21271 * 120.00436 * 359.97438 * 5 4 2 8 8 C 1.50693 * 109.47164 * 120.00060 * 2 1 3 9 9 O 1.21280 * 120.00404 * 119.99787 * 8 2 1 10 10 N 1.34776 * 120.00013 * 300.00465 * 8 2 1 11 11 C 1.46502 * 119.99995 * 179.97438 * 10 8 2 12 12 C 1.50698 * 109.47297 * 179.97438 * 11 10 8 13 13 C 1.29458 * 117.69505 * 94.99943 * 12 11 10 14 14 C 1.50322 * 123.64902 * 180.86340 * 13 12 11 15 15 N 1.47002 * 109.16929 * 349.01566 * 14 13 12 16 16 C 1.36931 * 121.37924 * 222.97278 * 15 14 13 17 17 H 1.08009 * 120.00315 * 155.97820 * 16 15 14 18 18 C 1.38812 * 120.00221 * 335.97305 * 16 15 14 19 19 N 1.31616 * 119.99802 * 344.51391 * 18 16 15 20 20 Si 1.86801 * 120.00462 * 164.51313 * 18 16 15 21 21 H 1.48500 * 109.46871 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47100 * 119.99821 * 20 18 16 23 23 H 1.48494 * 109.47171 * 240.00202 * 20 18 16 24 24 C 1.47342 * 117.24730 * 42.95143 * 15 14 13 25 25 C 1.49977 * 117.69409 * 274.74036 * 12 11 10 26 26 H 1.08996 * 109.47786 * 300.00089 * 1 2 3 27 27 H 1.09009 * 109.47229 * 59.99814 * 1 2 3 28 28 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47037 * 305.00286 * 4 2 1 30 30 H 1.08994 * 109.47174 * 184.99721 * 4 2 1 31 31 H 0.96998 * 119.99894 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99635 * 359.72709 * 6 5 4 33 33 H 0.97001 * 120.00259 * 359.97438 * 10 8 2 34 34 H 1.09001 * 109.47297 * 299.99626 * 11 10 8 35 35 H 1.09002 * 109.47485 * 60.00005 * 11 10 8 36 36 H 1.07993 * 118.17513 * 0.87853 * 13 12 11 37 37 H 1.09000 * 109.52576 * 108.92794 * 14 13 12 38 38 H 1.08999 * 109.51711 * 229.11505 * 14 13 12 39 39 H 0.96998 * 120.00431 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.78042 * 57.81029 * 24 15 14 41 41 H 1.09003 * 109.78031 * 178.61371 * 24 15 14 42 42 H 1.09002 * 109.31198 * 281.29119 * 25 12 11 43 43 H 1.09000 * 109.31160 * 40.71451 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 7 1.9854 -0.3912 -3.7002 7 8 1.0110 1.0870 -2.3633 8 6 2.0323 -0.7104 1.2304 9 8 2.7295 -1.6965 1.1192 10 7 1.7066 -0.2500 2.4545 11 6 2.1945 -0.9410 3.6507 12 6 1.6927 -0.2302 4.8812 13 6 0.6066 -0.6717 5.4301 14 6 -0.0219 -0.0538 6.6478 15 7 0.9139 0.9164 7.2344 16 6 1.1125 0.9872 8.5874 17 1 2.0339 1.3939 8.9774 18 6 0.1296 0.5363 9.4577 19 7 -1.0936 0.3289 9.0184 20 14 0.5428 0.2240 11.2525 21 1 1.9758 0.5318 11.4912 22 1 -0.2996 1.0931 12.1128 23 1 0.2807 -1.2004 11.5802 24 6 1.6297 1.8092 6.3062 25 6 2.4900 0.9350 5.3869 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -1.7197 -1.2952 30 1 3.1262 -0.7994 -1.2056 31 1 1.7285 0.1096 -4.4901 32 1 2.4930 -1.2128 -3.7905 33 1 1.1492 0.5388 2.5436 34 1 1.8308 -1.9685 3.6505 35 1 3.2845 -0.9414 3.6509 36 1 0.1255 -1.5320 4.9889 37 1 -0.9433 0.4547 6.3640 38 1 -0.2443 -0.8322 7.3776 39 1 -1.7806 0.0142 9.6266 40 1 0.9124 2.3784 5.7150 41 1 2.2682 2.4906 6.8685 42 1 3.3552 0.5675 5.9388 43 1 2.8322 1.5318 4.5414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755890440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:39 Heat of formation + Delta-G solvation = -76.329773 kcal Electronic energy + Delta-G solvation = -23522.810986 eV Core-core repulsion = 19988.181818 eV Total energy + Delta-G solvation = -3534.629168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29964 -40.23884 -39.30841 -36.42423 -35.22729 -34.61742 -34.41665 -32.55964 -31.41669 -29.11294 -28.32494 -26.19126 -24.70232 -24.24264 -22.79286 -21.70673 -20.75332 -19.49224 -18.71405 -18.17503 -17.51671 -17.11687 -17.05557 -16.75421 -16.64825 -16.04461 -15.72443 -15.33871 -15.22856 -15.12071 -14.55452 -14.44202 -14.03019 -13.95567 -13.72308 -13.49874 -13.26050 -12.95183 -12.89580 -12.80766 -12.61054 -12.20479 -12.17981 -12.10616 -12.03418 -11.70610 -11.26747 -11.01623 -10.82435 -10.69303 -10.54295 -10.06652 -9.63777 -8.75258 -7.88687 -5.29893 1.19215 1.46274 1.48226 1.58335 1.63276 1.67452 2.30442 2.50971 2.82302 3.28516 3.57712 3.62737 3.83909 3.95656 3.96986 4.01947 4.21271 4.43655 4.45456 4.54112 4.66138 4.68992 4.75090 4.76504 4.84535 4.92649 4.96272 5.08294 5.11222 5.21810 5.33333 5.37640 5.44247 5.48652 5.61597 5.77482 5.96297 6.17559 6.33835 6.48366 6.56427 7.13398 7.21858 7.39296 7.83389 8.37083 9.20037 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.002580 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.756098 B =10851.565145 C =10972.377122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.109 0.891 4 C -0.120 4.120 5 C 0.519 3.481 6 N -0.839 5.839 7 O -0.582 6.582 8 C 0.519 3.481 9 O -0.579 6.579 10 N -0.713 5.713 11 C 0.167 3.833 12 C -0.139 4.139 13 C -0.142 4.142 14 C 0.205 3.795 15 N -0.616 5.616 16 C -0.255 4.255 17 H 0.070 0.930 18 C -0.056 4.056 19 N -0.940 5.940 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.138 3.862 25 C -0.084 4.084 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.407 0.593 32 H 0.417 0.583 33 H 0.411 0.589 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.014 0.986 38 H 0.057 0.943 39 H 0.250 0.750 40 H 0.028 0.972 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 -2.682 -23.877 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.127 0.873 4 C -0.161 4.161 5 C 0.304 3.696 6 N -0.403 5.403 7 O -0.462 6.462 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.044 3.956 12 C -0.140 4.140 13 C -0.163 4.163 14 C 0.080 3.920 15 N -0.340 5.340 16 C -0.385 4.385 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.587 5.587 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.218 1.218 24 C 0.013 3.987 25 C -0.123 4.123 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.239 0.761 32 H 0.248 0.752 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.881 -2.812 -23.584 24.728 hybrid contribution -0.393 -0.085 0.983 1.062 sum 6.488 -2.897 -22.601 23.692 Atomic orbital electron populations 1.21865 0.91992 1.02516 1.03959 1.20971 0.98456 1.00928 0.90687 0.87320 1.21429 1.04311 1.00150 0.90165 1.20733 0.77884 0.84736 0.86218 1.43739 1.58979 1.30109 1.07444 1.90717 1.41757 1.26389 1.87348 1.20957 0.79215 0.84013 0.85190 1.90669 1.39922 1.27976 1.87399 1.46074 1.53170 1.32212 1.04897 1.20235 0.98910 0.94790 0.81673 1.20628 0.97068 0.99392 0.96923 1.22941 0.96857 0.99134 0.97352 1.19403 0.90103 0.91522 0.91019 1.44425 1.49392 1.37927 1.02233 1.19546 0.98916 1.37515 0.82521 0.91189 1.25746 0.94674 1.02754 1.01859 1.70170 1.01343 1.51482 1.35665 0.85192 0.77874 0.77000 0.80319 1.19131 1.21951 1.21814 1.21187 0.94049 0.91915 0.91597 1.20723 0.97524 0.95038 0.98972 0.91614 0.90344 0.92420 0.87255 0.87196 0.76114 0.75159 0.75306 0.91926 0.91197 0.86943 0.96876 0.92525 0.94130 0.95425 0.92288 0.91767 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.83 71.98 0.64 -1.98 16 2 C -0.09 -1.61 2.37 -11.54 -0.03 -1.63 16 3 H 0.11 1.93 7.96 -2.39 -0.02 1.91 16 4 C -0.12 -1.75 4.52 29.85 0.13 -1.62 16 5 C 0.52 7.93 7.82 87.66 0.69 8.61 16 6 N -0.84 -6.16 8.87 -173.53 -1.54 -7.70 16 7 O -0.58 -13.58 14.80 -3.00 -0.04 -13.62 16 8 C 0.52 12.02 7.15 87.65 0.63 12.65 16 9 O -0.58 -16.94 15.92 -3.03 -0.05 -16.98 16 10 N -0.71 -16.29 5.44 -466.79 -2.54 -18.83 16 11 C 0.17 4.48 5.66 85.63 0.48 4.96 16 12 C -0.14 -4.42 5.22 -15.14 -0.08 -4.49 16 13 C -0.14 -5.25 9.47 27.10 0.26 -4.99 16 14 C 0.20 9.83 5.23 85.42 0.45 10.27 16 15 N -0.62 -30.69 3.01 -703.03 -2.11 -32.80 16 16 C -0.25 -13.99 9.71 84.03 0.82 -13.17 16 17 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 18 C -0.06 -3.11 5.01 84.86 0.43 -2.68 16 19 N -0.94 -55.44 11.08 21.65 0.24 -55.20 16 20 Si 0.97 45.03 29.58 68.60 2.03 47.06 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 C 0.14 5.46 6.59 86.31 0.57 6.03 16 25 C -0.08 -2.66 5.95 29.72 0.18 -2.49 16 26 H 0.06 1.13 7.56 -2.39 -0.02 1.11 16 27 H 0.08 1.57 5.95 -2.38 -0.01 1.56 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.47 7.95 -2.39 -0.02 1.45 16 31 H 0.41 2.36 8.93 -92.71 -0.83 1.53 16 32 H 0.42 0.66 8.83 -92.71 -0.82 -0.16 16 33 H 0.41 8.32 7.88 -92.71 -0.73 7.59 16 34 H 0.06 1.76 7.78 -2.39 -0.02 1.74 16 35 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 36 H 0.11 3.69 7.73 -2.91 -0.02 3.67 16 37 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 3.09 6.41 -2.39 -0.02 3.08 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 2.28 7.96 -2.39 -0.02 2.26 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -72.01 351.65 -0.20 -72.20 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -1.33 Total: 16.41 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.15 Total: 9.47 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -5.95 Total: -114.53 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.09 Total: -30.60 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.01 -0.20 -72.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755890440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.125 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds