Wall clock time and date at job start Tue Mar 31 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99638 * 2 1 4 4 C 1.50704 * 109.46868 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99895 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00039 * 179.97438 * 4 3 2 7 7 C 1.47082 * 120.88260 * 180.02562 * 6 4 3 8 8 C 1.53236 * 108.52212 * 231.21083 * 7 6 4 9 9 N 1.46902 * 109.33948 * 306.16935 * 8 7 6 10 10 C 1.46906 * 111.00042 * 187.25501 * 9 8 7 11 11 C 1.52998 * 109.47394 * 75.78419 * 10 9 8 12 12 H 1.09001 * 109.47149 * 304.61326 * 11 10 9 13 13 C 1.47205 * 109.46565 * 64.60399 * 11 10 9 14 14 N 9.41966 * 131.36968 * 353.81250 * 2 1 3 15 15 C 1.52991 * 109.47460 * 184.60490 * 11 10 9 16 16 C 1.50693 * 109.47312 * 175.00115 * 15 11 10 17 17 H 1.08005 * 120.00246 * 0.02562 * 16 15 11 18 18 C 1.37878 * 120.00271 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99952 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47083 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47072 * 120.00042 * 20 18 16 23 23 H 1.48498 * 109.47452 * 239.99943 * 20 18 16 24 24 C 1.46899 * 111.26923 * 63.10583 * 9 8 7 25 25 C 1.47080 * 120.88204 * 0.02938 * 6 4 3 26 26 H 1.08997 * 109.47526 * 59.99306 * 1 2 3 27 27 H 1.08995 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46739 * 299.99484 * 1 2 3 29 29 H 1.09000 * 109.47225 * 60.00903 * 3 2 1 30 30 H 1.08996 * 109.47699 * 300.00355 * 3 2 1 31 31 H 1.08997 * 109.62584 * 111.50258 * 7 6 4 32 32 H 1.08998 * 109.62560 * 350.92168 * 7 6 4 33 33 H 1.09003 * 109.49203 * 186.21101 * 8 7 6 34 34 H 1.09003 * 109.51966 * 66.13994 * 8 7 6 35 35 H 1.09000 * 109.46810 * 315.78733 * 10 9 8 36 36 H 1.08997 * 109.47192 * 195.79277 * 10 9 8 37 37 H 1.09007 * 109.47317 * 55.00301 * 15 11 10 38 38 H 1.09001 * 109.47141 * 295.00463 * 15 11 10 39 39 H 0.97000 * 120.00641 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.49107 * 56.85694 * 24 9 8 41 41 H 1.08996 * 109.49329 * 176.93340 * 24 9 8 42 42 H 1.09000 * 109.63063 * 248.50195 * 25 6 4 43 43 H 1.09004 * 109.63079 * 9.08136 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0013 7 6 5.7443 2.2033 -0.0025 8 6 6.2889 3.0808 1.1296 9 7 5.7531 4.4416 0.9912 10 6 6.3831 5.3559 1.9530 11 6 7.7949 5.7036 1.4767 12 1 8.3624 4.7860 1.3216 13 6 7.7154 6.4510 0.2110 14 7 7.6546 7.0279 -0.7619 15 6 8.4926 6.5625 2.5332 16 6 9.9222 6.8025 2.1215 17 1 10.2958 6.3845 1.1983 18 6 10.7531 7.5564 2.9228 19 7 10.2982 8.0658 4.0467 20 14 12.5251 7.8544 2.4121 21 1 12.7869 7.1788 1.1159 22 1 12.7592 9.3136 2.2654 23 1 13.4375 7.3085 3.4487 24 6 4.2909 4.4554 1.1318 25 6 3.6644 3.6343 -0.0007 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6887 1.8464 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 6.1328 2.5556 -0.9580 32 1 6.0453 1.1683 0.1593 33 1 7.3771 3.1111 1.0750 34 1 5.9843 2.6661 2.0906 35 1 6.4374 4.8748 2.9296 36 1 5.7906 6.2675 2.0296 37 1 8.4727 6.0457 3.4927 38 1 7.9755 7.5177 2.6243 39 1 10.8828 8.5960 4.6107 40 1 4.0138 4.0213 2.0925 41 1 3.9301 5.4826 1.0788 42 1 3.8533 4.1238 -0.9561 43 1 2.5903 3.5454 0.1623 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076511681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:23 Heat of formation + Delta-G solvation = -68.433196 kcal Electronic energy + Delta-G solvation = -23616.848862 eV Core-core repulsion = 20082.562115 eV Total energy + Delta-G solvation = -3534.286747 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33032 -39.63134 -38.42662 -37.77092 -35.99853 -35.23759 -33.33463 -32.43323 -30.24925 -29.07531 -27.41334 -26.63281 -24.62017 -24.34419 -23.34727 -22.22799 -20.06769 -18.69365 -18.36274 -18.19870 -17.52542 -17.31978 -16.77368 -16.58175 -16.03176 -15.92004 -15.81617 -15.62127 -15.40924 -14.81893 -14.61838 -14.30758 -14.06922 -13.95116 -13.73759 -13.53146 -13.14574 -13.09070 -12.98263 -12.63946 -12.58974 -12.47864 -12.36867 -12.27220 -12.24673 -12.15721 -11.72164 -11.35212 -11.14025 -10.80694 -10.76021 -10.54763 -9.85623 -9.22838 -8.19184 -6.26631 1.38968 1.42576 1.49999 1.52443 1.68520 2.13403 2.20725 2.41745 2.84895 2.96825 3.16734 3.39187 3.53015 3.90165 3.96888 4.08628 4.11697 4.21733 4.27453 4.29183 4.43094 4.49714 4.51833 4.58018 4.59226 4.73017 4.76761 4.77038 4.89081 4.89984 4.95961 5.00177 5.09823 5.38208 5.48722 5.63882 5.80395 5.94908 6.06695 6.12634 6.22767 6.37196 6.85412 6.97900 7.07999 7.41987 8.91753 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.035535 B = 0.002695 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.769421 B =10386.876711 C =10472.526872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.047 3.953 4 C 0.508 3.492 5 O -0.578 6.578 6 N -0.609 5.609 7 C 0.119 3.881 8 C 0.044 3.956 9 N -0.552 5.552 10 C 0.075 3.925 11 C 0.022 3.978 12 H 0.112 0.888 13 C 0.269 3.731 14 N -0.514 5.514 15 C 0.038 3.962 16 C -0.536 4.536 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.039 3.961 25 C 0.110 3.890 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.049 0.951 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.090 -11.497 -4.221 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.032 4.032 4 C 0.297 3.703 5 O -0.458 6.458 6 N -0.344 5.344 7 C -0.003 4.003 8 C -0.085 4.085 9 N -0.277 5.277 10 C -0.054 4.054 11 C 0.000 4.000 12 H 0.130 0.870 13 C -0.047 4.047 14 N -0.191 5.191 15 C -0.001 4.001 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.772 3.228 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.089 4.089 25 C -0.012 4.012 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.662 -11.118 -6.023 24.224 hybrid contribution 1.099 0.203 1.056 1.537 sum -19.563 -10.915 -4.967 22.946 Atomic orbital electron populations 1.23040 0.78181 1.04170 1.01735 1.87969 1.22244 1.26789 1.95786 1.22419 0.88898 0.86773 1.05139 1.20977 0.90348 0.83495 0.75482 1.90696 1.75681 1.28213 1.51167 1.48238 1.06880 1.06578 1.72661 1.21634 0.79023 1.00384 0.99294 1.22504 1.01025 0.87812 0.97113 1.61870 1.05873 1.07870 1.52105 1.22046 0.92473 0.96996 0.93867 1.19147 0.98055 0.97384 0.85395 0.87031 1.29138 0.90061 0.91815 0.93717 1.80846 1.11879 1.12063 1.14336 1.18990 0.93439 0.94276 0.93420 1.21581 0.97428 1.32070 1.06361 0.92928 1.25684 1.02315 0.95653 0.95091 1.70025 1.37351 1.35606 1.13302 0.85681 0.80907 0.77691 0.78515 1.19477 1.21122 1.19940 1.22591 0.86697 1.01869 0.97762 1.22143 0.98782 0.80353 0.99910 0.92139 0.88846 0.92107 0.87253 0.87344 0.90830 0.89894 0.88870 0.93824 0.91200 0.89702 0.94784 0.97799 0.92751 0.93302 0.87971 0.90069 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -8.12 10.24 -129.94 -1.33 -9.45 16 3 C 0.05 0.66 4.78 71.24 0.34 1.00 16 4 C 0.51 11.51 7.78 87.66 0.68 12.19 16 5 O -0.58 -19.20 15.95 16.01 0.26 -18.95 16 6 N -0.61 -11.62 3.01 -817.87 -2.46 -14.09 16 7 C 0.12 2.59 6.60 86.35 0.57 3.16 16 8 C 0.04 0.92 5.45 86.38 0.47 1.39 16 9 N -0.55 -11.86 4.25 -895.16 -3.80 -15.66 16 10 C 0.07 1.86 4.37 86.30 0.38 2.24 16 11 C 0.02 0.75 2.27 -12.60 -0.03 0.72 16 12 H 0.11 3.52 6.70 -2.39 -0.02 3.50 16 13 C 0.27 10.49 13.65 89.48 1.22 11.71 16 14 N -0.51 -22.07 18.52 19.97 0.37 -21.70 16 15 C 0.04 1.66 4.42 29.84 0.13 1.79 16 16 C -0.54 -27.85 8.60 25.60 0.22 -27.63 16 17 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 18 C 0.01 0.62 5.46 84.66 0.46 1.08 16 19 N -0.92 -52.17 13.29 21.45 0.28 -51.88 16 20 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 C 0.04 0.59 5.59 86.40 0.48 1.07 16 25 C 0.11 1.38 6.50 86.36 0.56 1.94 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.11 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.11 0.88 8.00 -2.39 -0.02 0.86 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.03 7.06 -2.39 -0.02 2.01 16 33 H 0.09 1.99 6.63 -2.39 -0.02 1.98 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 36 H 0.08 2.06 7.77 -2.39 -0.02 2.04 16 37 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 1.33 7.90 -2.39 -0.02 1.31 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.12 0.62 6.02 -2.38 -0.01 0.61 16 Total: -1.00 -74.26 357.49 3.08 -71.18 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.00 Total: 3.28 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.74 Total: 12.15 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -5.61 Total: -103.33 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.07 Total: -28.40 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.26 3.08 -71.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076511681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.745 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds