Wall clock time and date at job start Tue Mar 31 2020 03:58:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.34777 * 119.99862 * 2 1
4 4 O 1.21279 * 120.00063 * 359.97438 * 3 2 1
5 5 C 1.50703 * 119.99795 * 179.97438 * 3 2 1
6 6 H 1.09001 * 109.87292 * 319.56056 * 5 3 2
7 7 C 1.54322 * 110.01260 * 80.65886 * 5 3 2
8 8 C 1.55154 * 102.94294 * 141.68048 * 7 5 3
9 9 C 1.55126 * 101.48924 * 324.33193 * 8 7 5
10 10 N 1.47022 * 109.88023 * 198.54370 * 5 3 2
11 11 C 1.34767 * 125.64940 * 61.45495 * 10 5 3
12 12 O 1.21588 * 120.00256 * 5.10936 * 11 10 5
13 13 N 1.34778 * 120.00144 * 185.11668 * 11 10 5
14 14 C 1.46503 * 120.00081 * 185.02042 * 13 11 10
15 15 C 1.53003 * 109.47052 * 184.92670 * 14 13 11
16 16 C 1.50693 * 115.55355 * 55.50419 * 15 14 13
17 17 H 1.07998 * 120.00184 * 219.77337 * 16 15 14
18 18 C 1.37882 * 119.99731 * 39.77691 * 16 15 14
19 19 N 1.31515 * 120.00068 * 11.87051 * 18 16 15
20 20 Si 1.86801 * 119.99932 * 191.87800 * 18 16 15
21 21 H 1.48494 * 109.47090 * 359.97438 * 20 18 16
22 22 H 1.48502 * 109.47286 * 119.99901 * 20 18 16
23 23 H 1.48500 * 109.46945 * 239.99795 * 20 18 16
24 24 C 1.52998 * 117.51708 * 201.21219 * 15 14 13
25 25 C 1.52993 * 60.00363 * 107.47762 * 24 15 14
26 26 H 1.09003 * 109.47029 * 180.02562 * 1 2 3
27 27 H 1.08997 * 109.47247 * 300.00534 * 1 2 3
28 28 H 1.09001 * 109.46801 * 60.00600 * 1 2 3
29 29 H 0.96999 * 119.99942 * 179.97438 * 2 1 3
30 30 H 1.08997 * 110.71914 * 260.04714 * 7 5 3
31 31 H 1.09003 * 110.72104 * 23.31983 * 7 5 3
32 32 H 1.08997 * 111.00501 * 82.57623 * 8 7 5
33 33 H 1.09000 * 111.00259 * 206.38394 * 8 7 5
34 34 H 1.09003 * 110.49745 * 278.45718 * 9 8 7
35 35 H 1.08994 * 110.34247 * 156.05779 * 9 8 7
36 36 H 0.97005 * 120.00200 * 5.01460 * 13 11 10
37 37 H 1.08998 * 109.47271 * 64.92273 * 14 13 11
38 38 H 1.09001 * 109.47284 * 304.91996 * 14 13 11
39 39 H 0.96998 * 120.00150 * 174.99667 * 19 18 16
40 40 H 1.08998 * 117.49952 * 214.96901 * 24 15 14
41 41 H 1.09003 * 117.49932 * 359.97438 * 24 15 14
42 42 H 1.09000 * 117.50369 * 252.50986 * 25 24 15
43 43 H 1.08999 * 117.52271 * 107.47850 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5325 2.2175 -0.0005
5 6 3.6459 1.1672 0.0006
6 1 4.0162 0.3872 0.6658
7 6 4.1746 0.9315 -1.4300
8 6 5.4083 1.8695 -1.5035
9 6 4.9292 3.0771 -0.6557
10 7 4.1457 2.4781 0.4402
11 6 3.9202 3.0415 1.6435
12 8 3.3314 2.4184 2.5058
13 7 4.3474 4.2955 1.8912
14 6 4.2007 4.8680 3.2318
15 6 4.6471 6.3313 3.2131
16 6 3.9522 7.2101 2.2053
17 1 4.5136 7.9535 1.6589
18 6 2.5995 7.0651 1.9809
19 7 1.8720 6.3349 2.7977
20 14 1.8004 7.9056 0.5165
21 1 2.8286 8.6625 -0.2416
22 1 1.1865 6.8822 -0.3673
23 1 0.7505 8.8406 0.9947
24 6 5.0468 6.9655 4.5469
25 6 6.1191 6.6247 3.5102
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 1.9500 -0.8400 0.0004
30 1 4.4722 -0.1084 -1.5647
31 1 3.4272 1.2188 -2.1696
32 1 6.2845 1.3983 -1.0582
33 1 5.6094 2.1707 -2.5315
34 1 4.3016 3.7381 -1.2534
35 1 5.7841 3.6228 -0.2566
36 1 4.7519 4.8191 1.1819
37 1 4.8177 4.3088 3.9351
38 1 3.1565 4.8106 3.5392
39 1 0.9098 6.2914 2.6827
40 1 4.8070 8.0183 4.6954
41 1 4.9914 6.3403 5.4381
42 1 6.7694 5.7752 3.7192
43 1 6.5849 7.4530 2.9763
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000331830186.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:56
Heat of formation + Delta-G solvation = -28.584691 kcal
Electronic energy + Delta-G solvation = -25191.652761 eV
Core-core repulsion = 21659.093974 eV
Total energy + Delta-G solvation = -3532.558786 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.35764 -38.60740 -37.14297 -36.31961 -34.40360 -33.00639 -32.06069 -31.11834
-29.82804 -26.50604 -25.97740 -25.13996 -23.17170 -21.59313 -21.17222 -20.54609
-19.19256 -19.13720 -17.80407 -17.33018 -16.05081 -15.95618 -15.37519 -14.98775
-14.73279 -14.61775 -14.16705 -14.00081 -13.55799 -13.40536 -13.01479 -12.80442
-12.67915 -12.54819 -12.29906 -12.13293 -11.73798 -11.53626 -11.39396 -11.31109
-10.99445 -10.93142 -10.66935 -10.43028 -10.18662 -9.68541 -9.59065 -9.22649
-9.02744 -9.00117 -8.69278 -8.33348 -8.09911 -7.63396 -5.96383 -4.04029
2.80419 3.07563 3.32082 3.41175 3.44846 3.45566 4.08862 4.40641
4.42459 4.50815 4.76652 4.86579 5.02208 5.15666 5.19742 5.25627
5.42981 5.53016 5.55165 5.58054 5.68295 5.77951 5.82282 5.87475
6.08587 6.10396 6.37439 6.49021 6.52388 6.63683 6.66589 6.76728
6.97964 7.13879 7.35415 7.53995 7.64379 7.73867 7.80504 8.04614
8.43200 8.46733 8.85256 8.97359 9.50036 9.57972 11.04143
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.014688 B = 0.005601 C = 0.005067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1905.816641 B = 4997.572415 C = 5524.212518
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.091 3.909
2 N -0.740 5.740
3 C 0.502 3.498
4 O -0.510 6.510
5 C 0.144 3.856
6 H 0.092 0.908
7 C -0.120 4.120
8 C -0.127 4.127
9 C 0.100 3.900
10 N -0.625 5.625
11 C 0.725 3.275
12 O -0.597 6.597
13 N -0.705 5.705
14 C 0.176 3.824
15 C 0.041 3.959
16 C -0.505 4.505
17 H 0.061 0.939
18 C 0.081 3.919
19 N -0.860 5.860
20 Si 0.886 3.114
21 H -0.273 1.273
22 H -0.281 1.281
23 H -0.285 1.285
24 C -0.192 4.192
25 C -0.212 4.212
26 H 0.071 0.929
27 H 0.059 0.941
28 H 0.055 0.945
29 H 0.398 0.602
30 H 0.088 0.912
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.085 0.915
34 H 0.067 0.933
35 H 0.079 0.921
36 H 0.394 0.606
37 H 0.020 0.980
38 H 0.108 0.892
39 H 0.263 0.737
40 H 0.079 0.921
41 H 0.065 0.935
42 H 0.067 0.933
43 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.068 -14.194 -9.975 18.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.393 5.393
3 C 0.286 3.714
4 O -0.382 6.382
5 C 0.034 3.966
6 H 0.109 0.891
7 C -0.158 4.158
8 C -0.166 4.166
9 C -0.024 4.024
10 N -0.365 5.365
11 C 0.428 3.572
12 O -0.476 6.476
13 N -0.356 5.356
14 C 0.053 3.947
15 C 0.041 3.959
16 C -0.542 4.542
17 H 0.079 0.921
18 C -0.125 4.125
19 N -0.494 5.494
20 Si 0.713 3.287
21 H -0.197 1.197
22 H -0.206 1.206
23 H -0.211 1.211
24 C -0.231 4.231
25 C -0.249 4.249
26 H 0.090 0.910
27 H 0.078 0.922
28 H 0.074 0.926
29 H 0.230 0.770
30 H 0.107 0.893
31 H 0.097 0.903
32 H 0.098 0.902
33 H 0.104 0.896
34 H 0.086 0.914
35 H 0.097 0.903
36 H 0.228 0.772
37 H 0.038 0.962
38 H 0.126 0.874
39 H 0.073 0.927
40 H 0.098 0.902
41 H 0.084 0.916
42 H 0.085 0.915
43 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 3.975 -13.881 -9.187 17.114
hybrid contribution -0.240 0.379 -0.970 1.068
sum 3.735 -13.503 -10.157 17.304
Atomic orbital electron populations
1.21466 0.79944 1.01618 1.02349 1.45742 1.07511 1.08508 1.77585
1.21113 0.90527 0.83828 0.75906 1.90782 1.69748 1.31125 1.46549
1.21156 0.90415 0.87990 0.97018 0.89054 1.22593 0.98294 1.01018
0.93897 1.22785 0.97367 0.95692 1.00710 1.22305 0.95328 0.95934
0.88805 1.47278 1.56213 1.19096 1.13915 1.15401 0.79245 0.82302
0.80301 1.90839 1.47559 1.64063 1.45129 1.44910 1.64209 1.11788
1.14678 1.20881 1.03566 0.90531 0.79749 1.19152 0.90011 0.92376
0.94407 1.20400 0.93149 1.19016 1.21625 0.92125 1.24928 0.97278
0.94512 0.95786 1.69822 1.05911 1.38137 1.35549 0.86637 0.79456
0.79164 0.83406 1.19732 1.20646 1.21084 1.22873 1.05454 1.00755
0.94013 1.22928 0.93763 1.01948 1.06288 0.91008 0.92244 0.92587
0.76957 0.89318 0.90261 0.90204 0.89640 0.91450 0.90276 0.77203
0.96151 0.87433 0.92655 0.90195 0.91618 0.91483 0.90673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.05 10.70 59.85 0.64 1.69 16
2 N -0.74 -9.21 5.71 -67.07 -0.38 -9.59 16
3 C 0.50 8.62 6.39 -10.98 -0.07 8.55 16
4 O -0.51 -11.78 16.16 5.56 0.09 -11.69 16
5 C 0.14 2.08 3.23 -68.10 -0.22 1.86 16
6 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16
7 C -0.12 -1.14 6.47 -24.90 -0.16 -1.30 16
8 C -0.13 -1.17 7.10 -24.47 -0.17 -1.34 16
9 C 0.10 1.37 6.45 -2.41 -0.02 1.36 16
10 N -0.63 -11.27 2.76 -169.86 -0.47 -11.74 16
11 C 0.73 16.81 7.83 -86.93 -0.68 16.13 16
12 O -0.60 -15.98 16.29 5.29 0.09 -15.89 16
13 N -0.70 -16.37 5.30 -65.22 -0.35 -16.71 16
14 C 0.18 4.46 4.96 -4.04 -0.02 4.44 16
15 C 0.04 1.02 1.86 -155.66 -0.29 0.73 16
16 C -0.50 -13.54 8.43 -34.44 -0.29 -13.83 16
17 H 0.06 1.62 7.84 -52.49 -0.41 1.20 16
18 C 0.08 2.24 5.23 -17.82 -0.09 2.15 16
19 N -0.86 -25.26 11.03 55.43 0.61 -24.65 16
20 Si 0.89 21.82 29.56 -169.99 -5.02 16.79 16
21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16
23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
24 C -0.19 -4.42 9.95 -26.74 -0.27 -4.68 16
25 C -0.21 -4.53 9.93 -26.73 -0.27 -4.80 16
26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.40 3.33 8.83 -40.82 -0.36 2.97 16
30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16
31 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16
32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16
33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
35 H 0.08 1.02 7.58 -51.93 -0.39 0.63 16
36 H 0.39 8.59 6.83 -40.82 -0.28 8.31 16
37 H 0.02 0.50 8.10 -51.93 -0.42 0.08 16
38 H 0.11 3.17 6.03 -51.93 -0.31 2.86 16
39 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16
40 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16
41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16
42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
43 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16
LS Contribution 355.70 15.07 5.36 5.36
Total: -1.00 -36.99 355.70 -8.77 -45.76
By element:
Atomic # 1 Polarization: 18.20 SS G_CDS: -6.79 Total: 11.41 kcal
Atomic # 6 Polarization: 12.86 SS G_CDS: -1.90 Total: 10.95 kcal
Atomic # 7 Polarization: -62.11 SS G_CDS: -0.59 Total: -62.70 kcal
Atomic # 8 Polarization: -27.76 SS G_CDS: 0.18 Total: -27.58 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -36.99 -8.77 -45.76 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331830186.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.178 kcal
(2) G-P(sol) polarization free energy of solvation -36.991 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds