Wall clock time and date at job start Tue Mar 31 2020 03:58:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.34777 * 119.99862 * 2 1
4 4 O 1.21279 * 120.00063 * 359.97438 * 3 2 1
5 5 C 1.50703 * 119.99795 * 179.97438 * 3 2 1
6 6 H 1.09001 * 109.87292 * 319.56056 * 5 3 2
7 7 C 1.54322 * 110.01260 * 80.65886 * 5 3 2
8 8 C 1.55154 * 102.94294 * 141.68048 * 7 5 3
9 9 C 1.55126 * 101.48924 * 324.33193 * 8 7 5
10 10 N 1.47022 * 109.88023 * 198.54370 * 5 3 2
11 11 C 1.34767 * 125.64940 * 61.45495 * 10 5 3
12 12 O 1.21588 * 120.00256 * 5.10936 * 11 10 5
13 13 N 1.34778 * 120.00144 * 185.11668 * 11 10 5
14 14 C 1.46503 * 120.00081 * 185.02042 * 13 11 10
15 15 C 1.53003 * 109.47052 * 184.92670 * 14 13 11
16 16 C 1.50693 * 115.55355 * 55.50419 * 15 14 13
17 17 H 1.07998 * 120.00184 * 219.77337 * 16 15 14
18 18 C 1.37882 * 119.99731 * 39.77691 * 16 15 14
19 19 N 1.31515 * 120.00068 * 11.87051 * 18 16 15
20 20 Si 1.86801 * 119.99932 * 191.87800 * 18 16 15
21 21 H 1.48494 * 109.47090 * 359.97438 * 20 18 16
22 22 H 1.48502 * 109.47286 * 119.99901 * 20 18 16
23 23 H 1.48500 * 109.46945 * 239.99795 * 20 18 16
24 24 C 1.52998 * 117.51708 * 201.21219 * 15 14 13
25 25 C 1.52993 * 60.00363 * 107.47762 * 24 15 14
26 26 H 1.09003 * 109.47029 * 180.02562 * 1 2 3
27 27 H 1.08997 * 109.47247 * 300.00534 * 1 2 3
28 28 H 1.09001 * 109.46801 * 60.00600 * 1 2 3
29 29 H 0.96999 * 119.99942 * 179.97438 * 2 1 3
30 30 H 1.08997 * 110.71914 * 260.04714 * 7 5 3
31 31 H 1.09003 * 110.72104 * 23.31983 * 7 5 3
32 32 H 1.08997 * 111.00501 * 82.57623 * 8 7 5
33 33 H 1.09000 * 111.00259 * 206.38394 * 8 7 5
34 34 H 1.09003 * 110.49745 * 278.45718 * 9 8 7
35 35 H 1.08994 * 110.34247 * 156.05779 * 9 8 7
36 36 H 0.97005 * 120.00200 * 5.01460 * 13 11 10
37 37 H 1.08998 * 109.47271 * 64.92273 * 14 13 11
38 38 H 1.09001 * 109.47284 * 304.91996 * 14 13 11
39 39 H 0.96998 * 120.00150 * 174.99667 * 19 18 16
40 40 H 1.08998 * 117.49952 * 214.96901 * 24 15 14
41 41 H 1.09003 * 117.49932 * 359.97438 * 24 15 14
42 42 H 1.09000 * 117.50369 * 252.50986 * 25 24 15
43 43 H 1.08999 * 117.52271 * 107.47850 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5325 2.2175 -0.0005
5 6 3.6459 1.1672 0.0006
6 1 4.0162 0.3872 0.6658
7 6 4.1746 0.9315 -1.4300
8 6 5.4083 1.8695 -1.5035
9 6 4.9292 3.0771 -0.6557
10 7 4.1457 2.4781 0.4402
11 6 3.9202 3.0415 1.6435
12 8 3.3314 2.4184 2.5058
13 7 4.3474 4.2955 1.8912
14 6 4.2007 4.8680 3.2318
15 6 4.6471 6.3313 3.2131
16 6 3.9522 7.2101 2.2053
17 1 4.5136 7.9535 1.6589
18 6 2.5995 7.0651 1.9809
19 7 1.8720 6.3349 2.7977
20 14 1.8004 7.9056 0.5165
21 1 2.8286 8.6625 -0.2416
22 1 1.1865 6.8822 -0.3673
23 1 0.7505 8.8406 0.9947
24 6 5.0468 6.9655 4.5469
25 6 6.1191 6.6247 3.5102
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 1.9500 -0.8400 0.0004
30 1 4.4722 -0.1084 -1.5647
31 1 3.4272 1.2188 -2.1696
32 1 6.2845 1.3983 -1.0582
33 1 5.6094 2.1707 -2.5315
34 1 4.3016 3.7381 -1.2534
35 1 5.7841 3.6228 -0.2566
36 1 4.7519 4.8191 1.1819
37 1 4.8177 4.3088 3.9351
38 1 3.1565 4.8106 3.5392
39 1 0.9098 6.2914 2.6827
40 1 4.8070 8.0183 4.6954
41 1 4.9914 6.3403 5.4381
42 1 6.7694 5.7752 3.7192
43 1 6.5849 7.4530 2.9763
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331830186.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:55
Heat of formation + Delta-G solvation = -57.028115 kcal
Electronic energy + Delta-G solvation = -25192.886160 eV
Core-core repulsion = 21659.093974 eV
Total energy + Delta-G solvation = -3533.792186 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.71417 -40.19182 -38.69928 -37.95253 -35.66684 -34.84051 -34.16323 -32.37129
-30.92858 -27.90857 -27.53436 -27.09919 -24.47622 -22.95411 -22.57008 -21.81515
-21.16054 -20.61447 -19.40996 -18.56566 -17.95009 -17.33761 -16.77414 -16.60187
-16.31513 -16.17274 -15.80235 -15.60391 -14.95773 -14.72757 -14.52641 -14.21101
-14.10359 -13.81604 -13.63267 -13.49801 -13.30129 -13.10544 -12.97570 -12.74515
-12.63482 -12.32918 -12.15516 -12.03651 -11.78899 -11.48384 -11.13994 -11.06245
-11.02948 -10.61879 -10.18495 -10.16789 -9.88668 -9.36226 -8.08286 -6.19954
1.32085 1.38412 1.46851 1.47779 1.74358 2.19895 2.36683 2.45347
3.00415 3.29163 3.55186 3.58372 3.68679 3.87592 4.10634 4.20242
4.26533 4.39164 4.50938 4.52846 4.54900 4.72038 4.73405 4.78607
4.82637 4.86038 4.92340 4.97345 5.06138 5.10730 5.25128 5.31262
5.39536 5.41288 5.52732 5.59116 5.86995 5.90785 6.13050 6.35909
6.54557 6.81041 7.18588 7.27799 7.43845 7.74341 8.89495
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.014688 B = 0.005601 C = 0.005067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1905.816641 B = 4997.572415 C = 5524.212518
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.719 5.719
3 C 0.492 3.508
4 O -0.584 6.584
5 C 0.132 3.868
6 H 0.108 0.892
7 C -0.106 4.106
8 C -0.110 4.110
9 C 0.085 3.915
10 N -0.627 5.627
11 C 0.716 3.284
12 O -0.644 6.644
13 N -0.704 5.704
14 C 0.190 3.810
15 C 0.007 3.993
16 C -0.501 4.501
17 H 0.064 0.936
18 C 0.035 3.965
19 N -0.893 5.893
20 Si 0.939 3.061
21 H -0.251 1.251
22 H -0.301 1.301
23 H -0.283 1.283
24 C -0.195 4.195
25 C -0.175 4.175
26 H 0.122 0.878
27 H 0.026 0.974
28 H 0.049 0.951
29 H 0.421 0.579
30 H 0.137 0.863
31 H 0.074 0.926
32 H 0.100 0.900
33 H 0.115 0.885
34 H 0.050 0.950
35 H 0.085 0.915
36 H 0.399 0.601
37 H 0.023 0.977
38 H 0.060 0.940
39 H 0.252 0.748
40 H 0.075 0.925
41 H 0.073 0.927
42 H 0.088 0.912
43 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.609 -15.730 -12.127 21.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.373 5.373
3 C 0.277 3.723
4 O -0.463 6.463
5 C 0.024 3.976
6 H 0.126 0.874
7 C -0.144 4.144
8 C -0.147 4.147
9 C -0.037 4.037
10 N -0.365 5.365
11 C 0.418 3.582
12 O -0.527 6.527
13 N -0.355 5.355
14 C 0.065 3.935
15 C 0.006 3.994
16 C -0.538 4.538
17 H 0.082 0.918
18 C -0.167 4.167
19 N -0.530 5.530
20 Si 0.766 3.234
21 H -0.174 1.174
22 H -0.228 1.228
23 H -0.209 1.209
24 C -0.233 4.233
25 C -0.212 4.212
26 H 0.140 0.860
27 H 0.044 0.956
28 H 0.068 0.932
29 H 0.258 0.742
30 H 0.155 0.845
31 H 0.092 0.908
32 H 0.119 0.881
33 H 0.133 0.867
34 H 0.069 0.931
35 H 0.104 0.896
36 H 0.234 0.766
37 H 0.042 0.958
38 H 0.078 0.922
39 H 0.062 0.938
40 H 0.094 0.906
41 H 0.092 0.908
42 H 0.107 0.893
43 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 6.571 -15.469 -11.403 20.310
hybrid contribution -1.027 0.788 -0.288 1.326
sum 5.545 -14.681 -11.692 19.569
Atomic orbital electron populations
1.21593 0.79381 1.04253 1.00444 1.45625 1.08050 1.08391 1.75237
1.21761 0.91923 0.83857 0.74727 1.90751 1.71292 1.33840 1.50404
1.21665 0.88682 0.86652 1.00628 0.87417 1.22701 0.97957 1.03919
0.89839 1.22811 0.97541 0.93007 1.01366 1.22650 0.94738 0.98187
0.88147 1.47350 1.55793 1.20358 1.12990 1.15669 0.78788 0.82092
0.81637 1.90780 1.49483 1.65078 1.47380 1.44760 1.64509 1.12133
1.14139 1.20497 1.00697 0.91376 0.80933 1.19172 0.93029 0.91701
0.95497 1.20664 0.93008 1.18661 1.21459 0.91823 1.25571 0.98123
0.95356 0.97670 1.70017 1.05292 1.40252 1.37394 0.85791 0.79008
0.77887 0.80743 1.17435 1.22814 1.20917 1.22876 1.06151 1.00453
0.93844 1.22927 0.91940 1.02595 1.03758 0.85970 0.95554 0.93213
0.74191 0.84536 0.90768 0.88101 0.86702 0.93114 0.89628 0.76565
0.95837 0.92179 0.93816 0.90617 0.90830 0.89318 0.89353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.99 10.70 127.77 1.37 3.36 16
2 N -0.72 -17.17 5.71 -484.51 -2.77 -19.94 16
3 C 0.49 17.02 6.39 87.66 0.56 17.57 16
4 O -0.58 -28.48 16.16 -3.03 -0.05 -28.53 16
5 C 0.13 3.64 3.23 44.60 0.14 3.79 16
6 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16
7 C -0.11 -1.61 6.47 31.78 0.21 -1.40 16
8 C -0.11 -1.55 7.10 32.06 0.23 -1.33 16
9 C 0.08 2.23 6.45 86.93 0.56 2.79 16
10 N -0.63 -22.58 2.76 -809.60 -2.23 -24.82 16
11 C 0.72 34.29 7.83 179.06 1.40 35.70 16
12 O -0.64 -36.16 16.29 -3.99 -0.07 -36.23 16
13 N -0.70 -33.61 5.30 -478.53 -2.53 -36.15 16
14 C 0.19 9.89 4.96 86.38 0.43 10.32 16
15 C 0.01 0.34 1.86 -52.93 -0.10 0.24 16
16 C -0.50 -26.92 8.43 25.60 0.22 -26.70 16
17 H 0.06 3.32 7.84 -2.91 -0.02 3.30 16
18 C 0.03 1.97 5.23 84.66 0.44 2.41 16
19 N -0.89 -55.03 11.03 21.45 0.24 -54.79 16
20 Si 0.94 45.94 29.56 68.60 2.03 47.97 16
21 H -0.25 -11.27 7.11 99.48 0.71 -10.57 16
22 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16
23 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16
24 C -0.19 -8.78 9.95 30.59 0.30 -8.48 16
25 C -0.18 -7.09 9.93 30.59 0.30 -6.78 16
26 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16
27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
29 H 0.42 5.91 8.83 -92.71 -0.82 5.09 16
30 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.07 1.25 7.85 -2.39 -0.02 1.23 16
32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16
34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
35 H 0.09 2.09 7.58 -2.39 -0.02 2.07 16
36 H 0.40 17.70 6.83 -92.70 -0.63 17.06 16
37 H 0.02 1.18 8.10 -2.39 -0.02 1.16 16
38 H 0.06 3.75 6.03 -2.39 -0.01 3.74 16
39 H 0.25 15.52 8.32 -92.71 -0.77 14.75 16
40 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16
41 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16
42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16
43 H 0.09 3.36 8.14 -2.39 -0.02 3.35 16
Total: -1.00 -87.75 355.70 0.25 -87.49
By element:
Atomic # 1 Polarization: 33.94 SS G_CDS: -0.43 Total: 33.51 kcal
Atomic # 6 Polarization: 25.42 SS G_CDS: 6.06 Total: 31.48 kcal
Atomic # 7 Polarization: -128.40 SS G_CDS: -7.30 Total: -135.69 kcal
Atomic # 8 Polarization: -64.64 SS G_CDS: -0.11 Total: -64.76 kcal
Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal
Total: -87.75 0.25 -87.49 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331830186.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.467 kcal
(2) G-P(sol) polarization free energy of solvation -87.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.495 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds