Wall clock time and date at job start Tue Mar 31 2020 04:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00179 * 2 1 4 4 H 1.09002 * 110.62785 * 26.89743 * 3 2 1 5 5 C 1.55140 * 110.86028 * 263.69330 * 3 2 1 6 6 C 1.54898 * 101.65567 * 205.89363 * 5 3 2 7 7 N 1.47844 * 104.79959 * 37.06197 * 6 5 3 8 8 C 1.46894 * 111.00356 * 213.63775 * 7 6 5 9 9 C 1.50699 * 109.47568 * 290.84158 * 8 7 6 10 10 O 1.21285 * 119.99398 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00631 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00456 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47128 * 269.99867 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72498 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.46507 * 119.99478 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47219 * 269.99855 * 21 11 9 23 23 C 1.47200 * 109.47110 * 180.02562 * 22 21 11 24 24 N 8.94803 * 109.78293 * 31.64919 * 2 1 3 25 25 C 1.47445 * 108.56698 * 335.91078 * 7 6 5 26 26 H 1.09005 * 109.47426 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47016 * 299.99800 * 1 2 3 28 28 H 1.08996 * 109.47652 * 59.99435 * 1 2 3 29 29 H 1.09001 * 110.98439 * 323.98346 * 5 3 2 30 30 H 1.08993 * 110.99709 * 87.75522 * 5 3 2 31 31 H 1.09004 * 110.37186 * 278.23528 * 6 5 3 32 32 H 1.09001 * 110.37880 * 155.89372 * 6 5 3 33 33 H 1.09005 * 109.47066 * 170.84595 * 8 7 6 34 34 H 1.08998 * 109.47151 * 50.84433 * 8 7 6 35 35 H 1.09001 * 109.47786 * 150.00139 * 12 11 9 36 36 H 1.08998 * 109.47558 * 30.00002 * 12 11 9 37 37 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.47381 * 30.00157 * 21 11 9 39 39 H 1.09002 * 109.46817 * 150.00395 * 21 11 9 40 40 H 1.09003 * 109.47088 * 300.00462 * 22 21 11 41 41 H 1.08998 * 109.46930 * 60.00022 * 22 21 11 42 42 H 1.08997 * 109.88679 * 120.39294 * 25 7 6 43 43 H 1.08993 * 109.88565 * 241.57994 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3353 2.0263 0.4615 5 6 2.3804 1.7453 -1.4409 6 6 3.5266 2.7529 -1.1758 7 7 4.2763 2.1810 -0.0372 8 6 4.8185 3.2417 0.8223 9 6 5.9140 3.9718 0.0888 10 8 6.2131 3.6413 -1.0391 11 7 6.5604 4.9927 0.6857 12 6 7.6249 5.7028 -0.0275 13 6 8.9473 5.0350 0.2495 14 1 8.9903 4.1687 0.8928 15 6 10.1012 5.5270 -0.3225 16 7 10.0479 6.5788 -1.1102 17 14 11.7402 4.6990 0.0203 18 1 11.5307 3.5446 0.9306 19 1 12.3306 4.2225 -1.2562 20 1 12.6622 5.6719 0.6594 21 6 6.1986 5.3922 2.0480 22 6 5.1007 6.4564 1.9928 23 6 4.7376 6.8582 3.3616 24 7 4.4574 7.1677 4.4181 25 6 3.3741 1.2954 0.7217 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.7334 0.8982 -2.0291 30 1 1.5366 2.2325 -1.9295 31 1 3.1200 3.7289 -0.9105 32 1 4.1704 2.8344 -2.0515 33 1 5.2230 2.8001 1.7331 34 1 4.0242 3.9422 1.0798 35 1 7.6624 6.7378 0.3124 36 1 7.4232 5.6791 -1.0984 37 1 10.8597 6.9248 -1.5130 38 1 5.8353 4.5235 2.5970 39 1 7.0749 5.8000 2.5519 40 1 5.4641 7.3251 1.4438 41 1 4.2245 6.0486 1.4889 42 1 3.7770 0.2828 0.7393 43 1 3.2580 1.6684 1.7392 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347508950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:27 Heat of formation + Delta-G solvation = -62.275348 kcal Electronic energy + Delta-G solvation = -23991.834752 eV Core-core repulsion = 20457.815029 eV Total energy + Delta-G solvation = -3534.019723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.06742 -39.87076 -38.02618 -37.62340 -36.55971 -34.85398 -32.62626 -32.09422 -29.88049 -29.48209 -27.53074 -26.73396 -25.27886 -24.31684 -22.23100 -21.87435 -19.94725 -18.78885 -18.32446 -18.13404 -17.64547 -17.32561 -16.79424 -16.24809 -16.10432 -15.82068 -15.68728 -15.28685 -15.10037 -14.84661 -14.46225 -14.25510 -14.05346 -13.74792 -13.55025 -13.48448 -13.31953 -13.08371 -12.99603 -12.73083 -12.67982 -12.59153 -12.49971 -12.27255 -12.19150 -12.13358 -11.79588 -11.62986 -11.60243 -10.57517 -10.57232 -10.37201 -9.43758 -9.17180 -8.16198 -6.27900 1.39694 1.42834 1.53085 1.70901 1.85214 1.95829 2.24906 2.44756 2.76881 3.06150 3.15014 3.20965 3.65006 3.74959 3.86612 4.05730 4.08029 4.14039 4.29021 4.33253 4.42720 4.48932 4.54592 4.57678 4.60990 4.68446 4.86310 4.90697 4.92254 4.99000 5.07705 5.11142 5.14687 5.18886 5.37357 5.64719 5.89728 5.99739 6.06870 6.16457 6.30802 6.61837 6.80346 6.87120 7.38168 7.61950 8.90449 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.004024 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.940589 B = 6957.369633 C = 8410.490762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.073 3.927 4 H 0.093 0.907 5 C -0.145 4.145 6 C 0.051 3.949 7 N -0.536 5.536 8 C 0.039 3.961 9 C 0.501 3.499 10 O -0.572 6.572 11 N -0.601 5.601 12 C 0.262 3.738 13 C -0.537 4.537 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.113 3.887 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.489 5.489 25 C 0.047 3.953 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.075 0.925 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.141 -6.888 5.395 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C 0.014 3.986 4 H 0.111 0.889 5 C -0.183 4.183 6 C -0.076 4.076 7 N -0.262 5.262 8 C -0.091 4.091 9 C 0.290 3.710 10 O -0.450 6.450 11 N -0.332 5.332 12 C 0.141 3.859 13 C -0.576 4.576 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.012 4.012 22 C -0.078 4.078 23 C -0.071 4.071 24 N -0.167 5.167 25 C -0.081 4.081 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.093 0.907 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.758 -6.937 6.100 21.811 hybrid contribution 0.758 0.417 -0.461 0.980 sum -19.001 -6.520 5.640 20.865 Atomic orbital electron populations 1.22981 0.79456 1.03796 1.00921 1.87903 1.21472 1.27547 1.94976 1.23395 0.94863 0.85136 0.95231 0.88903 1.23160 0.98180 0.99153 0.97791 1.22898 0.93662 0.96602 0.94418 1.63121 1.35175 1.18879 1.09060 1.22359 0.96290 0.94272 0.96207 1.21132 0.83437 0.79893 0.86586 1.90667 1.67335 1.65582 1.21429 1.48091 1.35954 1.33255 1.15935 1.18758 0.83996 0.91560 0.91624 1.21804 0.93242 1.13532 1.29035 0.92977 1.25709 1.02671 0.95660 0.94814 1.70027 1.29525 1.24645 1.32457 0.85528 0.79709 0.78699 0.77845 1.19298 1.21194 1.19836 1.21518 0.98034 0.98496 0.83114 1.19831 1.01563 1.01861 0.84561 1.29141 0.91639 0.91826 0.94506 1.81258 1.11071 1.10794 1.13607 1.22853 0.90082 0.98350 0.96773 0.88726 0.92694 0.93320 0.91462 0.88835 0.92195 0.92288 0.86163 0.88282 0.94798 0.97925 0.92642 0.87557 0.89910 0.86261 0.84632 0.90669 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.51 16 2 O -0.40 -7.64 10.44 -148.98 -1.55 -9.19 16 3 C 0.07 1.25 3.43 31.77 0.11 1.36 16 4 H 0.09 1.15 7.82 -2.39 -0.02 1.13 16 5 C -0.14 -2.86 6.81 31.98 0.22 -2.64 16 6 C 0.05 1.29 5.74 86.77 0.50 1.79 16 7 N -0.54 -14.05 4.86 -890.14 -4.33 -18.38 16 8 C 0.04 0.92 3.61 85.56 0.31 1.23 16 9 C 0.50 17.99 7.47 87.66 0.65 18.65 16 10 O -0.57 -27.28 14.62 -3.04 -0.04 -27.33 16 11 N -0.60 -21.16 2.46 -826.15 -2.03 -23.19 16 12 C 0.26 12.59 5.16 85.64 0.44 13.04 16 13 C -0.54 -29.22 9.39 25.60 0.24 -28.98 16 14 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 17 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C 0.11 2.64 5.17 86.38 0.45 3.09 16 22 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 23 C 0.25 5.02 15.43 89.44 1.38 6.40 16 24 N -0.49 -12.98 18.54 20.01 0.37 -12.60 16 25 C 0.05 0.93 6.64 86.65 0.58 1.50 16 26 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.05 0.48 8.11 -2.38 -0.02 0.46 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.27 7.62 -2.38 -0.02 1.25 16 32 H 0.06 1.93 7.38 -2.39 -0.02 1.92 16 33 H 0.12 2.34 7.29 -2.38 -0.02 2.33 16 34 H 0.10 1.50 6.89 -2.39 -0.02 1.48 16 35 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 37 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.11 1.83 6.44 -2.39 -0.02 1.81 16 39 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 40 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.14 1.50 7.22 -2.39 -0.02 1.48 16 42 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16 43 H 0.09 1.25 7.55 -2.39 -0.02 1.23 16 Total: -1.00 -76.70 361.01 2.46 -74.24 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.00 Total: 6.44 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.74 Total: 17.54 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -5.70 Total: -107.91 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.60 Total: -36.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -76.70 2.46 -74.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347508950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.961 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds