Wall clock time and date at job start Tue Mar 31 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 120.00046 * 2 1 4 4 O 1.21582 * 120.00110 * 185.38311 * 3 2 1 5 5 N 1.34771 * 120.00020 * 5.37612 * 3 2 1 6 6 C 1.46506 * 120.00238 * 184.90473 * 5 3 2 7 7 C 1.53001 * 109.47203 * 184.74237 * 6 5 3 8 8 C 1.50694 * 115.55208 * 296.27768 * 7 6 5 9 9 H 1.08007 * 120.00240 * 95.15882 * 8 7 6 10 10 C 1.37874 * 120.00363 * 275.15847 * 8 7 6 11 11 N 1.31523 * 119.99739 * 6.20147 * 10 8 7 12 12 Si 1.86796 * 120.00645 * 186.19830 * 10 8 7 13 13 H 1.48502 * 109.47393 * 270.00330 * 12 10 8 14 14 H 1.48505 * 109.46955 * 30.00231 * 12 10 8 15 15 H 1.48503 * 109.47245 * 149.99740 * 12 10 8 16 16 C 1.53001 * 117.49556 * 81.94800 * 7 6 5 17 17 C 1.52998 * 117.49622 * 150.60590 * 7 6 5 18 18 C 1.46500 * 120.00291 * 179.97438 * 2 1 3 19 19 H 1.08994 * 110.43858 * 182.54240 * 18 2 1 20 20 C 1.54626 * 110.48626 * 59.99951 * 18 2 1 21 21 C 1.54472 * 101.76851 * 216.52920 * 20 18 2 22 22 N 1.46765 * 105.47692 * 25.41205 * 21 20 18 23 23 C 1.46494 * 124.35221 * 162.98523 * 22 21 20 24 24 C 1.34420 * 111.29751 * 342.98942 * 22 21 20 25 25 O 1.21280 * 124.94079 * 180.43683 * 24 22 21 26 26 H 1.09007 * 109.46931 * 92.02957 * 1 2 3 27 27 H 1.08997 * 109.47217 * 212.03118 * 1 2 3 28 28 H 1.08999 * 109.47098 * 332.03129 * 1 2 3 29 29 H 0.97002 * 119.99921 * 4.90907 * 5 3 2 30 30 H 1.09003 * 109.46541 * 64.74872 * 6 5 3 31 31 H 1.08999 * 109.46927 * 304.75088 * 6 5 3 32 32 H 0.97002 * 119.99565 * 355.21354 * 11 10 8 33 33 H 1.08999 * 117.49488 * 215.00079 * 16 7 6 34 34 H 1.08997 * 117.50008 * 0.02562 * 16 7 6 35 35 H 1.09003 * 117.50000 * 359.97438 * 17 7 6 36 36 H 1.09002 * 117.49785 * 144.97496 * 17 7 6 37 37 H 1.09000 * 110.97034 * 334.64622 * 20 18 2 38 38 H 1.09000 * 110.97167 * 98.36910 * 20 18 2 39 39 H 1.09002 * 110.24924 * 144.41915 * 21 20 18 40 40 H 1.09004 * 110.24446 * 266.32717 * 21 20 18 41 41 H 1.08994 * 109.47241 * 90.00232 * 23 22 21 42 42 H 1.09000 * 109.47102 * 210.00827 * 23 22 21 43 43 H 1.09002 * 109.47415 * 330.00005 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1696 -0.0988 5 7 1.4695 2.3318 0.1094 6 6 2.1892 3.6034 0.0016 7 6 1.2259 4.7596 0.2776 8 6 0.0947 4.9122 -0.7062 9 1 -0.8675 4.4690 -0.4959 10 6 0.2880 5.6177 -1.8750 11 7 1.4886 6.0528 -2.1895 12 14 -1.1552 5.9554 -3.0118 13 1 -1.2821 4.8481 -3.9931 14 1 -2.4028 6.0536 -2.2122 15 1 -0.9283 7.2331 -3.7338 16 6 0.9423 5.1089 1.7400 17 6 1.8104 6.0361 0.8857 18 6 2.1975 -1.2687 0.0006 19 1 3.2714 -1.0881 0.0458 20 6 1.8409 -2.1001 -1.2535 21 6 1.8466 -3.5383 -0.6900 22 7 1.5601 -3.3988 0.7426 23 6 1.1192 -4.4955 1.6081 24 6 1.7543 -2.1355 1.1586 25 8 1.5977 -1.7471 2.2968 26 1 -0.3633 -0.0364 -1.0271 27 1 -0.3633 -0.8712 0.5450 28 1 -0.3633 0.9076 0.4820 29 1 0.5112 2.3281 0.2595 30 1 2.5996 3.7044 -1.0032 31 1 3.0004 3.6245 0.7293 32 1 2.2242 5.9384 -1.5676 33 1 -0.0626 5.4491 1.9903 34 1 1.4422 4.5153 2.5053 35 1 2.8811 6.0520 1.0895 36 1 1.3770 6.9864 0.5738 37 1 0.8539 -1.8329 -1.6309 38 1 2.5980 -1.9812 -2.0286 39 1 1.0732 -4.1357 -1.1729 40 1 2.8241 -3.9974 -0.8376 41 1 1.9893 -4.9897 2.0402 42 1 0.4927 -4.0986 2.4068 43 1 0.5473 -5.2142 1.0211 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355855973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:13 Heat of formation + Delta-G solvation = -24.603853 kcal Electronic energy + Delta-G solvation = -24561.478497 eV Core-core repulsion = 21029.092333 eV Total energy + Delta-G solvation = -3532.386164 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.95824 -39.30942 -37.07765 -36.55969 -35.22404 -33.55719 -31.93982 -31.76204 -27.87634 -27.03412 -26.76572 -25.36499 -24.66950 -22.10373 -21.32459 -20.13222 -19.69501 -19.10398 -18.12095 -16.97719 -16.68632 -16.35695 -16.07232 -15.28594 -15.09041 -14.39551 -14.07322 -13.88326 -13.80686 -13.73986 -13.25032 -13.18972 -12.94897 -12.77942 -12.73828 -12.40092 -12.35479 -12.13525 -12.07753 -11.70208 -11.28603 -10.92037 -10.82764 -10.46228 -10.16675 -10.13375 -9.81679 -9.57341 -9.00737 -8.72038 -8.55785 -8.47829 -8.39488 -8.04898 -6.39051 -4.14977 2.23570 2.68026 3.08778 3.38611 3.42545 3.57649 3.59356 4.13044 4.29596 4.42665 4.48187 4.61006 4.72278 4.94306 5.08999 5.09657 5.15376 5.19430 5.29601 5.34703 5.40840 5.48925 5.64664 5.73953 5.76746 5.87613 6.17931 6.20622 6.26985 6.44506 6.47276 6.57576 6.67001 6.80915 6.87286 7.17541 7.19061 7.22776 7.36728 7.98312 8.18213 8.33523 8.48426 8.82276 9.05593 9.61327 11.00433 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.003848 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.909702 B = 7274.774465 C = 7776.453768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.619 5.619 3 C 0.707 3.293 4 O -0.600 6.600 5 N -0.714 5.714 6 C 0.176 3.824 7 C 0.004 3.996 8 C -0.575 4.575 9 H 0.052 0.948 10 C 0.029 3.971 11 N -0.901 5.901 12 Si 1.069 2.931 13 H -0.289 1.289 14 H -0.289 1.289 15 H -0.284 1.284 16 C -0.194 4.194 17 C -0.171 4.171 18 C 0.133 3.867 19 H 0.136 0.864 20 C -0.144 4.144 21 C 0.105 3.895 22 N -0.627 5.627 23 C 0.097 3.903 24 C 0.506 3.494 25 O -0.515 6.515 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.399 0.601 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.277 0.723 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -19.787 1.895 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.357 5.357 3 C 0.408 3.592 4 O -0.479 6.479 5 N -0.368 5.368 6 C 0.052 3.948 7 C 0.003 3.997 8 C -0.613 4.613 9 H 0.070 0.930 10 C -0.177 4.177 11 N -0.535 5.535 12 Si 0.897 3.103 13 H -0.215 1.215 14 H -0.215 1.215 15 H -0.210 1.210 16 C -0.231 4.231 17 C -0.209 4.209 18 C 0.024 3.976 19 H 0.154 0.846 20 C -0.183 4.183 21 C -0.018 4.018 22 N -0.363 5.363 23 C -0.045 4.045 24 C 0.292 3.708 25 O -0.389 6.389 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.236 0.764 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.294 -18.884 1.014 19.050 hybrid contribution -0.120 -0.809 1.566 1.767 sum -2.414 -19.693 2.580 20.007 Atomic orbital electron populations 1.21671 0.79619 1.02979 1.01688 1.46604 1.06068 1.03595 1.79448 1.15864 0.85180 0.80348 0.77791 1.90849 1.12019 1.86137 1.58905 1.45177 1.11992 1.04161 1.75424 1.20920 0.92841 0.80799 1.00223 1.19335 0.97041 0.91656 0.91622 1.21191 0.96151 1.38356 1.05595 0.92955 1.25759 1.01311 0.93406 0.97265 1.70697 1.00570 1.44782 1.37444 0.83547 0.74313 0.76897 0.75500 1.21537 1.21499 1.21006 1.22896 0.99956 1.05113 0.95148 1.22746 0.96708 0.96140 1.05296 1.21429 1.00318 0.83049 0.92834 0.84619 1.23038 1.04649 0.92844 0.97783 1.22116 1.01861 0.97895 0.79925 1.48125 1.67893 1.09672 1.10638 1.21535 0.99794 0.88676 0.94452 1.21279 0.76739 0.82966 0.89858 1.90731 1.50820 1.76532 1.20797 0.92206 0.91854 0.90664 0.76446 0.92061 0.94160 0.91178 0.90086 0.91341 0.91245 0.89538 0.89191 0.88299 0.90086 0.90693 0.92625 0.90732 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 9.40 59.84 0.56 1.65 16 2 N -0.62 -9.87 2.85 -179.69 -0.51 -10.39 16 3 C 0.71 14.35 8.27 -86.92 -0.72 13.64 16 4 O -0.60 -14.01 15.71 5.29 0.08 -13.92 16 5 N -0.71 -14.80 5.35 -65.22 -0.35 -15.15 16 6 C 0.18 4.10 5.45 -4.04 -0.02 4.07 16 7 C 0.00 0.10 0.98 -155.66 -0.15 -0.05 16 8 C -0.58 -14.96 8.52 -34.44 -0.29 -15.25 16 9 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 10 C 0.03 0.79 5.39 -17.82 -0.10 0.69 16 11 N -0.90 -25.91 13.57 55.43 0.75 -25.16 16 12 Si 1.07 24.04 29.91 -169.99 -5.08 18.96 16 13 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C -0.19 -4.14 9.96 -26.69 -0.27 -4.41 16 17 C -0.17 -3.88 8.67 -26.69 -0.23 -4.11 16 18 C 0.13 1.80 3.33 -67.94 -0.23 1.57 16 19 H 0.14 2.05 7.00 -51.93 -0.36 1.69 16 20 C -0.14 -1.28 6.77 -25.10 -0.17 -1.45 16 21 C 0.11 0.71 7.35 -3.13 -0.02 0.69 16 22 N -0.63 -6.13 3.33 -180.29 -0.60 -6.74 16 23 C 0.10 0.72 10.96 59.84 0.66 1.38 16 24 C 0.51 7.04 6.42 -10.86 -0.07 6.97 16 25 O -0.51 -9.32 17.59 5.56 0.10 -9.22 16 26 H 0.06 0.68 7.87 -51.92 -0.41 0.27 16 27 H 0.06 0.75 7.11 -51.93 -0.37 0.38 16 28 H 0.07 1.01 6.02 -51.93 -0.31 0.70 16 29 H 0.40 7.72 5.89 -40.82 -0.24 7.48 16 30 H 0.06 1.59 7.92 -51.93 -0.41 1.18 16 31 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.28 7.95 6.24 -40.82 -0.25 7.69 16 33 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 37 H 0.09 0.77 7.05 -51.93 -0.37 0.40 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -34.15 353.28 -7.91 -42.06 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.57 Total: 8.83 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.05 Total: 5.40 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.71 Total: -57.43 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.18 Total: -23.14 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.15 -7.91 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355855973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.456 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds