Wall clock time and date at job start Tue Mar 31 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 120.00046 * 2 1 4 4 O 1.21582 * 120.00110 * 185.38311 * 3 2 1 5 5 N 1.34771 * 120.00020 * 5.37612 * 3 2 1 6 6 C 1.46506 * 120.00238 * 184.90473 * 5 3 2 7 7 C 1.53001 * 109.47203 * 184.74237 * 6 5 3 8 8 C 1.50694 * 115.55208 * 296.27768 * 7 6 5 9 9 H 1.08007 * 120.00240 * 95.15882 * 8 7 6 10 10 C 1.37874 * 120.00363 * 275.15847 * 8 7 6 11 11 N 1.31523 * 119.99739 * 6.20147 * 10 8 7 12 12 Si 1.86796 * 120.00645 * 186.19830 * 10 8 7 13 13 H 1.48502 * 109.47393 * 270.00330 * 12 10 8 14 14 H 1.48505 * 109.46955 * 30.00231 * 12 10 8 15 15 H 1.48503 * 109.47245 * 149.99740 * 12 10 8 16 16 C 1.53001 * 117.49556 * 81.94800 * 7 6 5 17 17 C 1.52998 * 117.49622 * 150.60590 * 7 6 5 18 18 C 1.46500 * 120.00291 * 179.97438 * 2 1 3 19 19 H 1.08994 * 110.43858 * 182.54240 * 18 2 1 20 20 C 1.54626 * 110.48626 * 59.99951 * 18 2 1 21 21 C 1.54472 * 101.76851 * 216.52920 * 20 18 2 22 22 N 1.46765 * 105.47692 * 25.41205 * 21 20 18 23 23 C 1.46494 * 124.35221 * 162.98523 * 22 21 20 24 24 C 1.34420 * 111.29751 * 342.98942 * 22 21 20 25 25 O 1.21280 * 124.94079 * 180.43683 * 24 22 21 26 26 H 1.09007 * 109.46931 * 92.02957 * 1 2 3 27 27 H 1.08997 * 109.47217 * 212.03118 * 1 2 3 28 28 H 1.08999 * 109.47098 * 332.03129 * 1 2 3 29 29 H 0.97002 * 119.99921 * 4.90907 * 5 3 2 30 30 H 1.09003 * 109.46541 * 64.74872 * 6 5 3 31 31 H 1.08999 * 109.46927 * 304.75088 * 6 5 3 32 32 H 0.97002 * 119.99565 * 355.21354 * 11 10 8 33 33 H 1.08999 * 117.49488 * 215.00079 * 16 7 6 34 34 H 1.08997 * 117.50008 * 0.02562 * 16 7 6 35 35 H 1.09003 * 117.50000 * 359.97438 * 17 7 6 36 36 H 1.09002 * 117.49785 * 144.97496 * 17 7 6 37 37 H 1.09000 * 110.97034 * 334.64622 * 20 18 2 38 38 H 1.09000 * 110.97167 * 98.36910 * 20 18 2 39 39 H 1.09002 * 110.24924 * 144.41915 * 21 20 18 40 40 H 1.09004 * 110.24446 * 266.32717 * 21 20 18 41 41 H 1.08994 * 109.47241 * 90.00232 * 23 22 21 42 42 H 1.09000 * 109.47102 * 210.00827 * 23 22 21 43 43 H 1.09002 * 109.47415 * 330.00005 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1696 -0.0988 5 7 1.4695 2.3318 0.1094 6 6 2.1892 3.6034 0.0016 7 6 1.2259 4.7596 0.2776 8 6 0.0947 4.9122 -0.7062 9 1 -0.8675 4.4690 -0.4959 10 6 0.2880 5.6177 -1.8750 11 7 1.4886 6.0528 -2.1895 12 14 -1.1552 5.9554 -3.0118 13 1 -1.2821 4.8481 -3.9931 14 1 -2.4028 6.0536 -2.2122 15 1 -0.9283 7.2331 -3.7338 16 6 0.9423 5.1089 1.7400 17 6 1.8104 6.0361 0.8857 18 6 2.1975 -1.2687 0.0006 19 1 3.2714 -1.0881 0.0458 20 6 1.8409 -2.1001 -1.2535 21 6 1.8466 -3.5383 -0.6900 22 7 1.5601 -3.3988 0.7426 23 6 1.1192 -4.4955 1.6081 24 6 1.7543 -2.1355 1.1586 25 8 1.5977 -1.7471 2.2968 26 1 -0.3633 -0.0364 -1.0271 27 1 -0.3633 -0.8712 0.5450 28 1 -0.3633 0.9076 0.4820 29 1 0.5112 2.3281 0.2595 30 1 2.5996 3.7044 -1.0032 31 1 3.0004 3.6245 0.7293 32 1 2.2242 5.9384 -1.5676 33 1 -0.0626 5.4491 1.9903 34 1 1.4422 4.5153 2.5053 35 1 2.8811 6.0520 1.0895 36 1 1.3770 6.9864 0.5738 37 1 0.8539 -1.8329 -1.6309 38 1 2.5980 -1.9812 -2.0286 39 1 1.0732 -4.1357 -1.1729 40 1 2.8241 -3.9974 -0.8376 41 1 1.9893 -4.9897 2.0402 42 1 0.4927 -4.0986 2.4068 43 1 0.5473 -5.2142 1.0211 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355855973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:12 Heat of formation + Delta-G solvation = -48.093790 kcal Electronic energy + Delta-G solvation = -24562.497097 eV Core-core repulsion = 21029.092333 eV Total energy + Delta-G solvation = -3533.404764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05590 -40.74311 -38.87480 -37.61349 -36.52153 -35.19235 -33.92461 -32.73364 -28.86613 -28.28779 -27.84127 -27.01708 -26.29819 -23.21229 -22.91111 -21.59321 -21.36058 -20.29877 -19.60163 -18.45520 -18.00424 -17.43844 -17.25473 -16.72507 -16.30285 -15.98609 -15.59757 -15.26064 -15.13735 -14.85058 -14.67607 -14.54541 -14.37965 -14.14743 -13.79947 -13.54198 -13.46477 -13.36844 -13.10789 -12.84239 -12.78939 -12.61757 -12.24894 -12.10466 -11.91025 -11.57004 -11.33943 -11.25490 -10.57037 -10.44067 -10.35042 -10.13760 -9.79027 -9.53108 -8.50775 -6.26736 1.10375 1.58141 1.66052 1.68658 1.82509 1.93458 2.13390 2.61079 2.85310 3.25374 3.26253 3.34820 3.53819 3.86514 3.96544 4.02694 4.06631 4.34536 4.37537 4.38772 4.42688 4.50330 4.55142 4.62543 4.67722 4.70667 4.76884 4.81458 4.86244 4.97836 5.03935 5.05119 5.26787 5.34345 5.41930 5.51376 5.55962 5.79377 5.94233 6.14930 6.27164 6.70637 6.90173 7.01787 7.46083 7.57098 8.88951 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.003848 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.909702 B = 7274.774465 C = 7776.453768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.614 5.614 3 C 0.700 3.300 4 O -0.638 6.638 5 N -0.713 5.713 6 C 0.193 3.807 7 C -0.017 4.017 8 C -0.575 4.575 9 H 0.054 0.946 10 C -0.019 4.019 11 N -0.931 5.931 12 Si 1.113 2.887 13 H -0.277 1.277 14 H -0.270 1.270 15 H -0.291 1.291 16 C -0.168 4.168 17 C -0.174 4.174 18 C 0.120 3.880 19 H 0.112 0.888 20 C -0.134 4.134 21 C 0.107 3.893 22 N -0.616 5.616 23 C 0.091 3.909 24 C 0.500 3.500 25 O -0.570 6.570 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.406 0.594 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -22.321 1.200 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.350 5.350 3 C 0.402 3.598 4 O -0.521 6.521 5 N -0.367 5.367 6 C 0.068 3.932 7 C -0.018 4.018 8 C -0.613 4.613 9 H 0.072 0.928 10 C -0.219 4.219 11 N -0.567 5.567 12 Si 0.937 3.063 13 H -0.203 1.203 14 H -0.194 1.194 15 H -0.217 1.217 16 C -0.205 4.205 17 C -0.212 4.212 18 C 0.012 3.988 19 H 0.130 0.870 20 C -0.172 4.172 21 C -0.015 4.015 22 N -0.349 5.349 23 C -0.049 4.049 24 C 0.286 3.714 25 O -0.448 6.448 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.244 0.756 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.217 -21.517 0.306 21.928 hybrid contribution 0.489 -0.137 1.820 1.890 sum -3.728 -21.653 2.127 22.074 Atomic orbital electron populations 1.21850 0.77641 1.03283 1.03295 1.46655 1.07324 1.03038 1.78000 1.16062 0.84864 0.81277 0.77622 1.90811 1.13786 1.86895 1.60568 1.45015 1.12173 1.03698 1.75837 1.20518 0.92795 0.81996 0.97898 1.19343 0.97183 0.92273 0.93008 1.21452 0.96639 1.37364 1.05803 0.92788 1.27045 1.02538 0.93134 0.99183 1.70808 1.01227 1.46936 1.37751 0.82965 0.72363 0.76657 0.74350 1.20323 1.19445 1.21686 1.22888 1.00093 1.03588 0.93922 1.22695 0.97535 0.95168 1.05817 1.21692 0.98927 0.82581 0.95638 0.87017 1.23056 1.05385 0.93069 0.95717 1.22400 1.04412 0.96823 0.77819 1.48263 1.65794 1.08657 1.12223 1.21763 1.00370 0.88273 0.94525 1.21302 0.76689 0.84458 0.88972 1.90696 1.53654 1.77807 1.22684 0.89873 0.90462 0.91383 0.75619 0.95590 0.94684 0.92466 0.89364 0.89697 0.90241 0.91138 0.88238 0.87257 0.86372 0.88651 0.91860 0.92373 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 9.40 127.77 1.20 3.20 16 2 N -0.61 -19.43 2.85 -840.67 -2.40 -21.82 16 3 C 0.70 29.07 8.27 179.06 1.48 30.55 16 4 O -0.64 -30.98 15.71 -3.98 -0.06 -31.04 16 5 N -0.71 -30.00 5.35 -478.53 -2.56 -32.56 16 6 C 0.19 9.24 5.45 86.38 0.47 9.71 16 7 C -0.02 -0.82 0.98 -52.93 -0.05 -0.87 16 8 C -0.58 -29.80 8.52 25.60 0.22 -29.58 16 9 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 10 C -0.02 -1.00 5.39 84.65 0.46 -0.55 16 11 N -0.93 -54.66 13.57 21.45 0.29 -54.37 16 12 Si 1.11 47.90 29.91 68.60 2.05 49.96 16 13 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 14 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 C -0.17 -7.00 9.96 30.62 0.30 -6.70 16 17 C -0.17 -7.95 8.67 30.62 0.27 -7.68 16 18 C 0.12 3.19 3.33 44.99 0.15 3.34 16 19 H 0.11 3.50 7.00 -2.39 -0.02 3.49 16 20 C -0.13 -2.01 6.77 31.65 0.21 -1.79 16 21 C 0.11 1.01 7.35 86.83 0.64 1.64 16 22 N -0.62 -10.42 3.33 -842.92 -2.81 -13.23 16 23 C 0.09 1.09 10.96 127.77 1.40 2.49 16 24 C 0.50 13.58 6.42 87.90 0.56 14.14 16 25 O -0.57 -20.99 17.59 -3.03 -0.05 -21.04 16 26 H 0.08 1.67 7.87 -2.38 -0.02 1.65 16 27 H 0.08 1.70 7.11 -2.39 -0.02 1.68 16 28 H 0.07 1.77 6.02 -2.39 -0.01 1.76 16 29 H 0.41 15.69 5.89 -92.71 -0.55 15.14 16 30 H 0.03 1.41 7.92 -2.39 -0.02 1.39 16 31 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.26 15.74 6.24 -92.71 -0.58 15.16 16 33 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.10 1.34 7.05 -2.39 -0.02 1.32 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.10 0.61 8.14 -2.38 -0.02 0.60 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 43 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -77.22 353.28 2.43 -74.79 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.66 Total: 31.41 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 7.31 Total: 17.91 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -7.47 Total: -121.98 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.12 Total: -52.08 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.05 Total: 49.96 kcal Total: -77.22 2.43 -74.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355855973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.691 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds