Wall clock time and date at job start Tue Mar 31 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50709 * 119.99686 * 2 1 4 4 N 1.46496 * 109.47001 * 124.99546 * 3 2 1 5 5 C 1.46499 * 120.00057 * 269.99923 * 4 3 2 6 6 C 1.50706 * 109.47351 * 270.00180 * 5 4 3 7 7 H 1.08001 * 119.99517 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00159 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99715 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99676 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47506 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47008 * 120.00198 * 10 8 6 13 13 H 1.48499 * 109.47082 * 239.99871 * 10 8 6 14 14 C 1.34781 * 120.00182 * 89.99809 * 4 3 2 15 15 O 1.21276 * 119.99880 * 179.97438 * 14 4 3 16 16 C 1.50696 * 119.99554 * 0.02562 * 14 4 3 17 17 N 1.46903 * 109.47042 * 186.09612 * 16 14 4 18 18 C 1.47196 * 111.00213 * 66.20280 * 17 16 14 19 19 C 1.52984 * 108.72614 * 54.36946 * 18 17 16 20 20 N 1.46013 * 110.03986 * 50.29393 * 19 18 17 21 21 C 1.46504 * 118.53453 * 161.56221 * 20 19 18 22 22 C 1.33713 * 122.93094 * 341.83374 * 20 19 18 23 23 O 1.21280 * 118.62868 * 181.68774 * 22 20 19 24 24 C 1.46901 * 111.00015 * 189.09768 * 17 16 14 25 25 H 1.08001 * 119.99834 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00519 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46768 * 4.99803 * 3 2 1 29 29 H 1.09002 * 109.46683 * 244.99762 * 3 2 1 30 30 H 1.09004 * 109.47438 * 30.00149 * 5 4 3 31 31 H 1.08997 * 109.47045 * 150.00187 * 5 4 3 32 32 H 0.97001 * 119.99348 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47855 * 66.09163 * 16 14 4 34 34 H 1.09007 * 109.46953 * 306.09071 * 16 14 4 35 35 H 1.08999 * 109.59315 * 294.60261 * 18 17 16 36 36 H 1.08999 * 109.59637 * 174.14015 * 18 17 16 37 37 H 1.09000 * 109.38092 * 290.12190 * 19 18 17 38 38 H 1.09000 * 109.28349 * 170.40467 * 19 18 17 39 39 H 1.08991 * 109.47536 * 89.99531 * 21 20 19 40 40 H 1.09007 * 109.46849 * 210.00112 * 21 20 19 41 41 H 1.09009 * 109.47046 * 329.99467 * 21 20 19 42 42 H 1.08997 * 109.38930 * 47.08830 * 24 17 16 43 43 H 1.09004 * 109.38481 * 166.87893 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5586 1.8651 2.4248 6 6 2.8439 3.3439 2.4804 7 1 3.3037 3.8371 1.6368 8 6 2.5179 4.0670 3.6082 9 7 1.9585 3.4662 4.6356 10 14 2.8722 5.8997 3.6772 11 1 3.5011 6.3308 2.4028 12 1 1.6019 6.6423 3.8777 13 1 3.7948 6.1834 4.8057 14 6 4.2496 0.8664 0.9826 15 8 5.0197 0.8890 1.9192 16 6 4.6972 0.3185 -0.3480 17 7 6.0434 -0.2541 -0.2140 18 6 6.0285 -1.4376 0.6612 19 6 4.9920 -2.4289 0.1290 20 7 5.2020 -2.6545 -1.2982 21 6 4.6092 -3.8447 -1.9133 22 6 5.9156 -1.8261 -2.0678 23 8 6.0143 -2.0725 -3.2512 24 6 6.6005 -0.6025 -1.5278 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6213 1.4027 -0.9314 30 1 1.4884 1.6968 2.5459 31 1 3.0987 1.3606 3.2260 32 1 1.7288 3.9750 5.4288 33 1 4.7158 1.1221 -1.0842 34 1 4.0034 -0.4566 -0.6737 35 1 5.7619 -1.1391 1.6750 36 1 7.0136 -1.9040 0.6620 37 1 3.9915 -2.0265 0.2881 38 1 5.0907 -3.3741 0.6628 39 1 3.6092 -3.6067 -2.2756 40 1 5.2303 -4.1699 -2.7480 41 1 4.5472 -4.6433 -1.1738 42 1 6.4512 0.2292 -2.2163 43 1 7.6674 -0.8017 -1.4271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359390676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:30 Heat of formation + Delta-G solvation = -18.796844 kcal Electronic energy + Delta-G solvation = -25001.745833 eV Core-core repulsion = 21469.611480 eV Total energy + Delta-G solvation = -3532.134353 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03860 -39.14162 -37.19052 -35.71345 -35.09725 -33.22685 -32.11545 -30.13333 -29.60608 -27.76251 -26.69727 -25.43570 -24.77785 -23.26279 -22.04749 -20.04801 -19.13166 -18.11797 -17.18071 -16.94679 -16.51058 -16.33720 -16.11501 -15.84865 -15.20180 -14.76806 -14.60195 -14.27998 -14.04648 -13.64803 -13.36227 -13.18896 -12.98653 -12.68181 -12.44506 -12.32055 -12.21259 -11.80323 -11.75353 -11.60843 -11.33677 -11.17120 -11.05488 -10.88671 -10.63472 -10.54095 -10.19928 -9.64039 -9.26476 -9.02102 -8.96859 -8.45187 -8.30484 -7.72520 -6.06132 -4.10607 2.36710 2.39428 2.69891 3.29245 3.32085 3.37628 3.41995 3.52864 4.11636 4.25605 4.44196 4.70034 4.74443 4.82866 5.02147 5.05486 5.10909 5.16638 5.26579 5.28655 5.30638 5.38048 5.42175 5.46392 5.56144 5.61517 5.63736 5.90984 5.94607 6.09691 6.12324 6.62466 6.70648 6.73671 6.84156 7.06414 7.15356 7.40465 7.51150 7.90298 7.90664 8.21174 8.35052 8.88222 9.05128 9.54812 11.01997 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.004324 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.222944 B = 6474.063228 C = 7094.877979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.249 3.751 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.520 6.520 16 C 0.023 3.977 17 N -0.504 5.504 18 C 0.034 3.966 19 C 0.072 3.928 20 N -0.609 5.609 21 C 0.079 3.921 22 C 0.484 3.516 23 O -0.553 6.553 24 C 0.042 3.958 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 -12.756 -11.378 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.189 4.189 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.130 3.870 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.294 3.706 15 O -0.396 6.396 16 C -0.107 4.107 17 N -0.226 5.226 18 C -0.094 4.094 19 C -0.052 4.052 20 N -0.343 5.343 21 C -0.064 4.064 22 C 0.271 3.729 23 O -0.431 6.431 24 C -0.089 4.089 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.933 -12.428 -11.056 16.891 hybrid contribution -0.621 0.300 -0.226 0.725 sum 2.312 -12.128 -11.282 16.725 Atomic orbital electron populations 1.23825 0.95811 1.01843 1.00212 1.23379 0.96410 0.98808 1.00257 1.20580 0.93251 0.95361 0.89656 1.48240 1.10290 1.60441 1.13609 1.19271 0.95323 0.93818 0.78579 1.21472 1.40368 0.93313 1.01296 0.92371 1.24921 0.95031 0.98750 0.95331 1.69941 1.42154 1.36075 1.05203 0.86455 0.77887 0.84974 0.78181 1.19770 1.21031 1.20867 1.20004 0.82311 0.79166 0.89116 1.90656 1.52018 1.55472 1.41451 1.22321 0.89930 1.00205 0.98289 1.62181 1.21905 1.28641 1.09915 1.22767 0.98793 0.88000 0.99858 1.22284 1.01335 1.01555 0.80053 1.47476 1.52185 1.24914 1.09745 1.21692 0.98624 0.86826 0.99217 1.21449 0.78865 0.85921 0.86703 1.90700 1.61803 1.74481 1.16077 1.22547 1.00847 0.94421 0.91096 0.88801 0.88140 0.88257 0.89255 0.91058 0.95017 0.93864 0.92795 0.88033 0.91979 0.86190 0.89645 0.91171 0.89822 0.92677 0.90414 0.91251 0.86861 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.02 0.42 -1.79 16 2 C -0.17 -2.27 9.58 -36.02 -0.34 -2.61 16 3 C 0.14 2.10 5.57 -5.19 -0.03 2.07 16 4 N -0.59 -11.79 2.44 -176.43 -0.43 -12.22 16 5 C 0.25 6.25 5.16 -5.19 -0.03 6.22 16 6 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 10 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.51 9.76 7.32 -10.99 -0.08 9.68 16 15 O -0.52 -12.06 14.21 5.56 0.08 -11.99 16 16 C 0.02 0.33 3.33 -4.98 -0.02 0.32 16 17 N -0.50 -6.74 4.73 -237.54 -1.12 -7.86 16 18 C 0.03 0.41 5.62 -3.67 -0.02 0.39 16 19 C 0.07 0.73 5.67 -4.31 -0.02 0.71 16 20 N -0.61 -6.69 3.06 -182.47 -0.56 -7.25 16 21 C 0.08 0.73 10.30 59.85 0.62 1.34 16 22 C 0.48 6.17 7.04 -11.67 -0.08 6.09 16 23 O -0.55 -8.75 16.33 5.56 0.09 -8.66 16 24 C 0.04 0.48 5.87 -5.19 -0.03 0.45 16 25 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 27 H 0.10 1.24 7.75 -52.49 -0.41 0.84 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.07 0.93 6.61 -51.93 -0.34 0.59 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.10 1.34 7.48 -51.93 -0.39 0.95 16 34 H 0.06 0.80 4.89 -51.93 -0.25 0.55 16 35 H 0.12 1.74 6.25 -51.93 -0.32 1.42 16 36 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.07 0.77 6.74 -51.93 -0.35 0.42 16 38 H 0.08 0.68 7.98 -51.93 -0.41 0.26 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.79 7.26 -51.93 -0.38 0.42 16 41 H 0.07 0.48 7.92 -51.92 -0.41 0.06 16 42 H 0.11 1.20 7.88 -51.93 -0.41 0.80 16 43 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -33.81 349.87 -7.53 -41.34 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.53 Total: 0.52 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.04 Total: 9.65 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -1.38 Total: -52.70 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.81 -7.53 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359390676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.539 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds