Wall clock time and date at job start Tue Mar 31 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50709 * 119.99686 * 2 1 4 4 N 1.46496 * 109.47001 * 124.99546 * 3 2 1 5 5 C 1.46499 * 120.00057 * 269.99923 * 4 3 2 6 6 C 1.50706 * 109.47351 * 270.00180 * 5 4 3 7 7 H 1.08001 * 119.99517 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00159 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99715 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99676 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47506 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47008 * 120.00198 * 10 8 6 13 13 H 1.48499 * 109.47082 * 239.99871 * 10 8 6 14 14 C 1.34781 * 120.00182 * 89.99809 * 4 3 2 15 15 O 1.21276 * 119.99880 * 179.97438 * 14 4 3 16 16 C 1.50696 * 119.99554 * 0.02562 * 14 4 3 17 17 N 1.46903 * 109.47042 * 186.09612 * 16 14 4 18 18 C 1.47196 * 111.00213 * 66.20280 * 17 16 14 19 19 C 1.52984 * 108.72614 * 54.36946 * 18 17 16 20 20 N 1.46013 * 110.03986 * 50.29393 * 19 18 17 21 21 C 1.46504 * 118.53453 * 161.56221 * 20 19 18 22 22 C 1.33713 * 122.93094 * 341.83374 * 20 19 18 23 23 O 1.21280 * 118.62868 * 181.68774 * 22 20 19 24 24 C 1.46901 * 111.00015 * 189.09768 * 17 16 14 25 25 H 1.08001 * 119.99834 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00519 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46768 * 4.99803 * 3 2 1 29 29 H 1.09002 * 109.46683 * 244.99762 * 3 2 1 30 30 H 1.09004 * 109.47438 * 30.00149 * 5 4 3 31 31 H 1.08997 * 109.47045 * 150.00187 * 5 4 3 32 32 H 0.97001 * 119.99348 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47855 * 66.09163 * 16 14 4 34 34 H 1.09007 * 109.46953 * 306.09071 * 16 14 4 35 35 H 1.08999 * 109.59315 * 294.60261 * 18 17 16 36 36 H 1.08999 * 109.59637 * 174.14015 * 18 17 16 37 37 H 1.09000 * 109.38092 * 290.12190 * 19 18 17 38 38 H 1.09000 * 109.28349 * 170.40467 * 19 18 17 39 39 H 1.08991 * 109.47536 * 89.99531 * 21 20 19 40 40 H 1.09007 * 109.46849 * 210.00112 * 21 20 19 41 41 H 1.09009 * 109.47046 * 329.99467 * 21 20 19 42 42 H 1.08997 * 109.38930 * 47.08830 * 24 17 16 43 43 H 1.09004 * 109.38481 * 166.87893 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5586 1.8651 2.4248 6 6 2.8439 3.3439 2.4804 7 1 3.3037 3.8371 1.6368 8 6 2.5179 4.0670 3.6082 9 7 1.9585 3.4662 4.6356 10 14 2.8722 5.8997 3.6772 11 1 3.5011 6.3308 2.4028 12 1 1.6019 6.6423 3.8777 13 1 3.7948 6.1834 4.8057 14 6 4.2496 0.8664 0.9826 15 8 5.0197 0.8890 1.9192 16 6 4.6972 0.3185 -0.3480 17 7 6.0434 -0.2541 -0.2140 18 6 6.0285 -1.4376 0.6612 19 6 4.9920 -2.4289 0.1290 20 7 5.2020 -2.6545 -1.2982 21 6 4.6092 -3.8447 -1.9133 22 6 5.9156 -1.8261 -2.0678 23 8 6.0143 -2.0725 -3.2512 24 6 6.6005 -0.6025 -1.5278 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6213 1.4027 -0.9314 30 1 1.4884 1.6968 2.5459 31 1 3.0987 1.3606 3.2260 32 1 1.7288 3.9750 5.4288 33 1 4.7158 1.1221 -1.0842 34 1 4.0034 -0.4566 -0.6737 35 1 5.7619 -1.1391 1.6750 36 1 7.0136 -1.9040 0.6620 37 1 3.9915 -2.0265 0.2881 38 1 5.0907 -3.3741 0.6628 39 1 3.6092 -3.6067 -2.2756 40 1 5.2303 -4.1699 -2.7480 41 1 4.5472 -4.6433 -1.1738 42 1 6.4512 0.2292 -2.2163 43 1 7.6674 -0.8017 -1.4271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359390676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:29 Heat of formation + Delta-G solvation = -43.058779 kcal Electronic energy + Delta-G solvation = -25002.797910 eV Core-core repulsion = 21469.611480 eV Total energy + Delta-G solvation = -3533.186430 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.05261 -40.56012 -38.31537 -37.13007 -36.06853 -35.08593 -33.65699 -31.08839 -30.91778 -29.22540 -27.81751 -26.84925 -25.73148 -24.84940 -23.36236 -21.19020 -20.32087 -19.32150 -18.64079 -18.24629 -17.91775 -17.39992 -17.26563 -17.17650 -16.50889 -16.26112 -15.74190 -15.68336 -15.41981 -14.68196 -14.43863 -14.34451 -14.20267 -14.05829 -13.72490 -13.42818 -13.28764 -13.19385 -12.97652 -12.94252 -12.76144 -12.61418 -12.53715 -12.24195 -12.19054 -12.12122 -11.62086 -11.58470 -10.62267 -10.53480 -10.33854 -9.88353 -9.46475 -9.30100 -8.19884 -6.33641 1.30604 1.38317 1.40772 1.43673 1.52182 1.81396 1.86682 2.25981 2.42543 2.92096 3.10429 3.36423 3.62195 3.79434 3.89067 4.00390 4.08319 4.15504 4.25186 4.30312 4.33895 4.43863 4.50260 4.57571 4.63565 4.70696 4.83509 4.87062 4.95009 5.03656 5.04982 5.25424 5.27038 5.54084 5.65567 5.68489 5.77495 5.79163 5.96165 6.09932 6.25316 6.73370 6.80913 6.97073 7.32035 7.52110 8.87184 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.004324 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.222944 B = 6474.063228 C = 7094.877979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.599 5.599 5 C 0.268 3.732 6 C -0.540 4.540 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.271 1.271 13 H -0.282 1.282 14 C 0.504 3.496 15 O -0.568 6.568 16 C 0.040 3.960 17 N -0.521 5.521 18 C 0.034 3.966 19 C 0.079 3.921 20 N -0.606 5.606 21 C 0.076 3.924 22 C 0.482 3.518 23 O -0.588 6.588 24 C 0.048 3.952 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.020 0.980 31 H 0.001 0.999 32 H 0.266 0.734 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -13.209 -12.830 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.202 4.202 3 C 0.010 3.990 4 N -0.330 5.330 5 C 0.146 3.854 6 C -0.579 4.579 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.196 1.196 13 H -0.208 1.208 14 C 0.292 3.708 15 O -0.447 6.447 16 C -0.090 4.090 17 N -0.244 5.244 18 C -0.094 4.094 19 C -0.045 4.045 20 N -0.338 5.338 21 C -0.066 4.066 22 C 0.270 3.730 23 O -0.468 6.468 24 C -0.082 4.082 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.038 0.962 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.140 0.860 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.759 -12.904 -12.534 18.200 hybrid contribution -0.608 0.387 0.258 0.766 sum 2.151 -12.517 -12.276 17.663 Atomic orbital electron populations 1.24051 0.95555 1.02900 0.98061 1.23279 0.96762 0.98075 1.02128 1.20788 0.92833 0.96383 0.88956 1.48191 1.11608 1.60212 1.13009 1.18663 0.93784 0.92540 0.80366 1.21750 1.40248 0.94608 1.01280 0.92921 1.25783 0.94735 1.03404 0.94941 1.70050 1.42980 1.37898 1.05794 0.85427 0.78107 0.79489 0.78141 1.19189 1.19645 1.20841 1.20849 0.81361 0.78121 0.90463 1.90632 1.53247 1.57289 1.43535 1.22157 0.90959 1.01027 0.94896 1.62137 1.21346 1.29713 1.11189 1.22689 1.00342 0.88083 0.98241 1.22236 1.00166 1.02320 0.79762 1.47539 1.51437 1.25003 1.09849 1.21823 0.98286 0.86804 0.99645 1.21628 0.78843 0.86261 0.86276 1.90692 1.63272 1.75399 1.17457 1.22584 1.01455 0.94265 0.89933 0.86533 0.88331 0.87061 0.90417 0.88307 0.96226 0.98103 0.92501 0.86503 0.90174 0.89107 0.87906 0.91779 0.87137 0.92300 0.91573 0.88547 0.85987 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.18 -4.61 9.58 25.65 0.25 -4.36 16 3 C 0.13 3.99 5.57 85.64 0.48 4.47 16 4 N -0.60 -24.08 2.44 -830.49 -2.03 -26.10 16 5 C 0.27 13.96 5.16 85.64 0.44 14.40 16 6 C -0.54 -30.51 9.39 25.60 0.24 -30.27 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 10 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 C 0.50 19.49 7.32 87.65 0.64 20.14 16 15 O -0.57 -27.26 14.21 -3.02 -0.04 -27.30 16 16 C 0.04 1.09 3.33 85.56 0.28 1.37 16 17 N -0.52 -13.21 4.73 -905.45 -4.28 -17.49 16 18 C 0.03 0.78 5.62 86.24 0.48 1.27 16 19 C 0.08 1.43 5.67 86.47 0.49 1.92 16 20 N -0.61 -11.80 3.06 -850.18 -2.60 -14.41 16 21 C 0.08 1.21 10.30 127.77 1.32 2.53 16 22 C 0.48 11.31 7.04 87.68 0.62 11.93 16 23 O -0.59 -17.73 16.33 -3.03 -0.05 -17.78 16 24 C 0.05 0.99 5.87 85.42 0.50 1.49 16 25 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 26 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 27 H 0.11 2.53 7.75 -2.91 -0.02 2.51 16 28 H 0.08 2.50 7.72 -2.39 -0.02 2.48 16 29 H 0.10 2.39 6.61 -2.39 -0.02 2.37 16 30 H 0.02 1.06 8.07 -2.38 -0.02 1.04 16 31 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.12 2.82 7.48 -2.39 -0.02 2.80 16 34 H 0.08 1.89 4.89 -2.38 -0.01 1.88 16 35 H 0.09 2.68 6.25 -2.39 -0.01 2.66 16 36 H 0.10 1.94 8.08 -2.39 -0.02 1.93 16 37 H 0.06 1.27 6.74 -2.39 -0.02 1.26 16 38 H 0.11 1.45 7.98 -2.39 -0.02 1.43 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 1.23 7.26 -2.38 -0.02 1.22 16 41 H 0.10 0.99 7.92 -2.38 -0.02 0.97 16 42 H 0.12 2.31 7.88 -2.39 -0.02 2.29 16 43 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -75.23 349.87 1.48 -73.75 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.99 Total: 14.63 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 7.17 Total: 23.10 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -8.63 Total: -112.92 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -0.09 Total: -45.08 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -75.23 1.48 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359390676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.691 kcal (2) G-P(sol) polarization free energy of solvation -75.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds