Wall clock time and date at job start Tue Mar 31 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47901 * 111.00280 * 2 1 4 4 C 1.53992 * 107.05912 * 145.84655 * 3 2 1 5 5 C 1.54591 * 105.22815 * 358.72139 * 4 3 2 6 6 C 1.48536 * 111.00124 * 117.39956 * 2 1 3 7 7 H 1.09002 * 110.66363 * 318.87581 * 6 2 1 8 8 C 1.50697 * 110.67083 * 81.84552 * 6 2 1 9 9 O 1.21286 * 119.99929 * 18.54018 * 8 6 2 10 10 N 1.34776 * 119.99972 * 198.54868 * 8 6 2 11 11 C 1.46970 * 120.59351 * 359.71754 * 10 8 6 12 12 C 1.53814 * 108.39836 * 124.75584 * 11 10 8 13 13 N 1.46965 * 108.57506 * 49.63715 * 12 11 10 14 14 C 1.34779 * 120.59035 * 124.62611 * 13 12 11 15 15 O 1.21690 * 119.99684 * 174.84618 * 14 13 12 16 16 C 1.46373 * 120.00243 * 354.83830 * 14 13 12 17 17 H 1.08001 * 119.99893 * 5.21875 * 16 14 13 18 18 C 1.40052 * 120.00000 * 185.21496 * 16 14 13 19 19 N 1.30665 * 120.00181 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99677 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46977 * 120.00364 * 20 18 16 23 23 H 1.48500 * 109.46969 * 239.99950 * 20 18 16 24 24 C 1.46965 * 118.81442 * 304.64505 * 13 12 11 25 25 C 1.46967 * 120.59388 * 179.97438 * 10 8 6 26 26 H 1.08995 * 109.47086 * 59.87761 * 1 2 3 27 27 H 1.09005 * 109.47172 * 179.87175 * 1 2 3 28 28 H 1.08996 * 109.46916 * 299.87153 * 1 2 3 29 29 H 1.09000 * 109.91580 * 26.48764 * 3 2 1 30 30 H 1.09004 * 109.91752 * 265.19834 * 3 2 1 31 31 H 1.08993 * 110.30602 * 117.69582 * 4 3 2 32 32 H 1.09005 * 110.30163 * 239.75850 * 4 3 2 33 33 H 1.09008 * 110.71781 * 96.45138 * 5 4 3 34 34 H 1.08989 * 110.72837 * 219.73317 * 5 4 3 35 35 H 1.08997 * 109.60600 * 244.54158 * 11 10 8 36 36 H 1.09003 * 109.60604 * 5.05142 * 11 10 8 37 37 H 1.08990 * 109.74224 * 289.85126 * 12 11 10 38 38 H 1.08999 * 109.67509 * 169.38156 * 12 11 10 39 39 H 0.96999 * 120.00044 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.61180 * 295.48142 * 24 13 12 41 41 H 1.09004 * 109.61076 * 174.97650 * 24 13 12 42 42 H 1.08998 * 109.60477 * 354.95083 * 25 10 8 43 43 H 1.09004 * 109.60538 * 115.28778 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2983 1.3658 0.8265 5 6 3.4505 -0.0921 1.3176 6 6 2.0013 -0.6381 1.2311 7 1 1.4219 -0.3346 2.1031 8 6 2.0053 -2.1388 1.0934 9 8 1.9350 -2.6471 -0.0056 10 7 2.0867 -2.9161 2.1914 11 6 2.1784 -2.3140 3.5290 12 6 1.0402 -2.8798 4.3952 13 7 1.0451 -4.3446 4.2759 14 6 1.1274 -5.1219 5.3739 15 8 1.0362 -6.3311 5.2716 16 6 1.3266 -4.5117 6.6894 17 1 1.3233 -3.4366 6.7920 18 6 1.5213 -5.3220 7.8150 19 7 1.5257 -6.6227 7.6908 20 14 1.7748 -4.5431 9.4939 21 1 1.7262 -3.0645 9.3660 22 1 0.7025 -4.9953 10.4163 23 1 3.0967 -4.9506 10.0341 24 6 0.9590 -4.9467 2.9380 25 6 2.0910 -4.3809 2.0723 26 1 -0.3633 0.5157 -0.8888 27 1 -0.3634 -1.0277 -0.0023 28 1 -0.3633 0.5118 0.8911 29 1 1.2759 2.0561 0.4571 30 1 2.2123 1.6967 -1.0212 31 1 4.1469 1.6454 0.2023 32 1 3.2143 2.0442 1.6756 33 1 4.1138 -0.6535 0.6594 34 1 3.8132 -0.1172 2.3450 35 1 3.1406 -2.5623 3.9767 36 1 2.0770 -1.2315 3.4505 37 1 0.0841 -2.4878 4.0487 38 1 1.1960 -2.5971 5.4363 39 1 1.6602 -7.1839 8.4704 40 1 -0.0030 -4.7018 2.4878 41 1 1.0641 -6.0288 3.0163 42 1 1.9319 -4.6637 1.0317 43 1 3.0483 -4.7730 2.4157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373472341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:38 Heat of formation + Delta-G solvation = -70.403898 kcal Electronic energy + Delta-G solvation = -24870.108722 eV Core-core repulsion = 21335.736519 eV Total energy + Delta-G solvation = -3534.372203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.57959 -40.01032 -38.87997 -37.44476 -34.84352 -34.45049 -33.15857 -32.66415 -30.40294 -29.04152 -27.71702 -26.59515 -24.88004 -24.08056 -22.73665 -21.82436 -21.15872 -19.85333 -18.89642 -18.02847 -17.51534 -17.26467 -16.73155 -16.24258 -16.17503 -15.91590 -15.85290 -15.50872 -15.20299 -14.67647 -14.55693 -14.34169 -14.25081 -13.62972 -13.53671 -13.31652 -13.13081 -12.99982 -12.86069 -12.75916 -12.52242 -12.39418 -12.32486 -12.27182 -12.04059 -11.95761 -11.90870 -11.53281 -10.94013 -10.74790 -10.07636 -9.77689 -9.37381 -9.00884 -8.28086 -6.82948 1.43031 1.44044 1.56333 1.61369 1.81397 2.25607 2.47461 2.78617 3.02276 3.43054 3.58774 3.63305 3.81332 3.93912 3.95081 4.03272 4.17131 4.22096 4.33366 4.42242 4.43689 4.47667 4.50882 4.58736 4.67042 4.74652 4.78565 4.83721 4.90391 4.96229 5.01925 5.05353 5.13309 5.29832 5.35856 5.43585 5.71085 5.80262 6.02557 6.12510 6.30825 6.43516 6.89458 7.17150 7.40096 8.46049 8.68155 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.003901 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.131471 B = 7176.786010 C = 7860.455894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.528 5.528 3 C 0.035 3.965 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.047 3.953 7 H 0.098 0.902 8 C 0.521 3.479 9 O -0.569 6.569 10 N -0.607 5.607 11 C 0.097 3.903 12 C 0.103 3.897 13 N -0.644 5.644 14 C 0.540 3.460 15 O -0.633 6.633 16 C -0.563 4.563 17 H 0.103 0.897 18 C 0.028 3.972 19 N -0.825 5.825 20 Si 0.996 3.004 21 H -0.237 1.237 22 H -0.275 1.275 23 H -0.272 1.272 24 C 0.113 3.887 25 C 0.113 3.887 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.273 0.727 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 21.178 -7.979 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.253 5.253 3 C -0.092 4.092 4 C -0.160 4.160 5 C -0.148 4.148 6 C -0.064 4.064 7 H 0.115 0.885 8 C 0.310 3.690 9 O -0.448 6.448 10 N -0.340 5.340 11 C -0.026 4.026 12 C -0.021 4.021 13 N -0.381 5.381 14 C 0.347 3.653 15 O -0.520 6.520 16 C -0.599 4.599 17 H 0.121 0.879 18 C -0.187 4.187 19 N -0.454 5.454 20 Si 0.815 3.185 21 H -0.159 1.159 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.012 4.012 25 C -0.011 4.011 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.779 19.822 -9.044 21.964 hybrid contribution -0.467 -0.403 1.139 1.295 sum 2.311 19.418 -7.905 21.093 Atomic orbital electron populations 1.22493 0.86959 1.01368 1.02015 1.64332 1.09034 1.16268 1.35656 1.22980 0.96691 0.87900 1.01641 1.22410 0.97618 0.95458 1.00509 1.22510 0.92297 0.96700 1.03291 1.22862 0.99787 0.89628 0.94119 0.88494 1.20934 0.75017 0.89939 0.83130 1.90645 1.50879 1.76015 1.27222 1.48170 1.72479 1.06109 1.07286 1.22491 0.99661 0.99512 0.80921 1.22141 0.97872 0.79933 1.02153 1.48036 1.78686 1.06676 1.04730 1.18782 0.75992 0.85572 0.84989 1.90556 1.57653 1.17062 1.86749 1.21525 1.52470 0.95238 0.90681 0.87931 1.27021 0.91563 0.94729 1.05386 1.70204 1.36404 1.06623 1.32203 0.84995 0.78122 0.80207 0.75161 1.15946 1.20027 1.19694 1.21459 0.97288 0.98523 0.83952 1.21742 0.98455 0.80333 1.00594 0.89955 0.93697 0.93611 0.91831 0.89931 0.89816 0.88716 0.92159 0.87906 0.90503 0.85521 0.92088 0.87485 0.91723 0.92956 0.91620 0.89058 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.29 127.69 1.19 1.58 16 2 N -0.53 -11.47 4.86 -888.24 -4.31 -15.78 16 3 C 0.03 0.50 6.70 86.45 0.58 1.08 16 4 C -0.12 -1.40 6.92 31.47 0.22 -1.18 16 5 C -0.11 -1.77 6.43 31.86 0.20 -1.57 16 6 C 0.05 0.99 1.69 44.57 0.08 1.07 16 7 H 0.10 1.62 6.36 -2.39 -0.02 1.60 16 8 C 0.52 15.44 6.74 87.66 0.59 16.03 16 9 O -0.57 -21.66 16.01 -3.05 -0.05 -21.71 16 10 N -0.61 -17.93 2.94 -817.20 -2.40 -20.34 16 11 C 0.10 2.40 6.51 86.56 0.56 2.96 16 12 C 0.10 3.26 6.52 86.57 0.56 3.83 16 13 N -0.64 -28.23 2.95 -822.31 -2.42 -30.65 16 14 C 0.54 30.32 7.61 86.36 0.66 30.97 16 15 O -0.63 -42.00 14.47 -4.32 -0.06 -42.06 16 16 C -0.56 -29.76 8.88 24.83 0.22 -29.53 16 17 H 0.10 4.63 5.63 -2.91 -0.02 4.61 16 18 C 0.03 1.49 5.50 85.31 0.47 1.96 16 19 N -0.82 -49.38 11.84 21.84 0.26 -49.13 16 20 Si 1.00 38.50 29.56 68.60 2.03 40.52 16 21 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 C 0.11 4.56 6.58 86.40 0.57 5.13 16 25 C 0.11 3.91 6.59 86.40 0.57 4.48 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.11 8.01 -2.38 -0.02 1.09 16 28 H 0.05 0.72 8.00 -2.39 -0.02 0.70 16 29 H 0.06 0.71 7.73 -2.39 -0.02 0.69 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 1.24 8.05 -2.38 -0.02 1.22 16 34 H 0.10 1.22 7.96 -2.39 -0.02 1.20 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.13 2.02 5.28 -2.39 -0.01 2.01 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 3.39 5.29 -2.39 -0.01 3.38 16 39 H 0.27 14.84 8.29 -92.71 -0.77 14.07 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 3.05 7.02 -2.38 -0.02 3.03 16 42 H 0.09 3.18 6.99 -2.39 -0.02 3.16 16 43 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -80.89 339.68 0.51 -80.37 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 1.01 Total: 21.97 kcal Atomic # 6 Polarization: 30.33 SS G_CDS: 6.47 Total: 36.80 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -8.88 Total: -115.90 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -0.11 Total: -63.77 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.52 kcal Total: -80.89 0.51 -80.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373472341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.968 kcal (2) G-P(sol) polarization free energy of solvation -80.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds