Wall clock time and date at job start Tue Mar 31 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47845 * 110.99956 * 2 1 4 4 C 1.54903 * 104.79335 * 146.36412 * 3 2 1 5 5 C 1.55393 * 101.74474 * 323.01684 * 4 3 2 6 6 C 1.47440 * 110.99806 * 120.84209 * 2 1 3 7 7 H 1.08996 * 109.89204 * 117.17077 * 6 2 1 8 8 C 1.50701 * 109.88917 * 356.14761 * 6 2 1 9 9 O 1.21279 * 119.99991 * 295.76892 * 8 6 2 10 10 N 1.34776 * 120.00050 * 115.77192 * 8 6 2 11 11 C 1.46968 * 120.59320 * 174.11887 * 10 8 6 12 12 C 1.53369 * 108.63767 * 235.20313 * 11 10 8 13 13 N 1.46962 * 108.63694 * 310.58074 * 12 11 10 14 14 C 1.34778 * 120.59391 * 235.22744 * 13 12 11 15 15 O 1.21689 * 119.99935 * 185.27461 * 14 13 12 16 16 C 1.46367 * 120.00088 * 5.27164 * 14 13 12 17 17 H 1.08010 * 120.00086 * 5.20608 * 16 14 13 18 18 C 1.40046 * 120.00337 * 185.21305 * 16 14 13 19 19 N 1.30669 * 119.99681 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00415 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47162 * 59.99186 * 20 18 16 22 22 H 1.48501 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47154 * 299.99743 * 20 18 16 24 24 C 1.46968 * 118.81304 * 55.21979 * 13 12 11 25 25 C 1.46962 * 120.59376 * 354.10155 * 10 8 6 26 26 H 1.08998 * 109.47599 * 304.51102 * 1 2 3 27 27 H 1.09000 * 109.47478 * 64.50681 * 1 2 3 28 28 H 1.09000 * 109.47260 * 184.50858 * 1 2 3 29 29 H 1.09004 * 110.37126 * 265.18958 * 3 2 1 30 30 H 1.09002 * 110.37299 * 27.41883 * 3 2 1 31 31 H 1.08996 * 110.99484 * 81.02082 * 4 3 2 32 32 H 1.09005 * 110.98968 * 204.83796 * 4 3 2 33 33 H 1.09003 * 110.67918 * 277.18006 * 5 4 3 34 34 H 1.09002 * 110.84923 * 153.86633 * 5 4 3 35 35 H 1.08997 * 109.61293 * 354.95598 * 11 10 8 36 36 H 1.09001 * 109.60777 * 115.45961 * 11 10 8 37 37 H 1.09004 * 109.60670 * 70.32034 * 12 11 10 38 38 H 1.08995 * 109.61177 * 190.83185 * 12 11 10 39 39 H 0.97009 * 120.00079 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.61293 * 185.02700 * 24 13 12 41 41 H 1.09003 * 109.74774 * 64.60652 * 24 13 12 42 42 H 1.09004 * 109.60642 * 244.53699 * 25 10 8 43 43 H 1.08995 * 109.61160 * 5.04822 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9181 0.2789 1.9329 6 6 1.9973 -0.7057 1.1818 7 1 2.5672 -1.5801 0.8676 8 6 0.8610 -1.1291 2.0766 9 8 0.1646 -0.2915 2.6098 10 7 0.6188 -2.4385 2.2844 11 6 -0.4009 -2.8661 3.2526 12 6 0.2512 -3.8180 4.2630 13 7 1.0017 -4.8437 3.5252 14 6 0.7591 -6.1532 3.7326 15 8 1.4509 -6.9937 3.1887 16 6 -0.3362 -6.5642 4.6121 17 1 -1.0023 -5.8226 5.0279 18 6 -0.5207 -7.9191 4.9146 19 7 0.2849 -8.8164 4.4112 20 14 -1.9191 -8.4438 6.0364 21 1 -3.2144 -8.0298 5.4397 22 1 -1.8978 -9.9200 6.1969 23 1 -1.7572 -7.7987 7.3641 24 6 2.0214 -4.4161 2.5570 25 6 1.3693 -3.4643 1.5466 26 1 -0.3634 0.5822 0.8468 27 1 -0.3634 0.4423 -0.9276 28 1 -0.3634 -1.0245 0.0808 29 1 2.2148 1.7038 -1.0183 30 1 1.2880 2.0596 0.4705 31 1 4.1301 0.9281 0.2243 32 1 3.5495 2.2720 1.2640 33 1 2.3782 0.7706 2.7421 34 1 3.8017 -0.2335 2.3133 35 1 -0.7983 -1.9954 3.7740 36 1 -1.2068 -3.3825 2.7310 37 1 0.9311 -3.2590 4.9060 38 1 -0.5204 -4.2937 4.8681 39 1 0.1569 -9.7550 4.6204 40 1 2.4188 -5.2869 2.0356 41 1 2.8293 -3.9007 3.0764 42 1 0.6894 -4.0233 0.9036 43 1 2.1409 -2.9885 0.9414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373472347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:41 Heat of formation + Delta-G solvation = -63.939034 kcal Electronic energy + Delta-G solvation = -24992.917322 eV Core-core repulsion = 21458.825457 eV Total energy + Delta-G solvation = -3534.091866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.99496 -40.13156 -38.72080 -37.46368 -34.85206 -34.57497 -33.10774 -32.56929 -30.68127 -28.96735 -27.76328 -26.66274 -24.91611 -24.12621 -22.60621 -22.20645 -21.21739 -19.61922 -18.98772 -18.13651 -17.62797 -17.32979 -16.87942 -16.32395 -16.15431 -16.09613 -15.93031 -15.67532 -15.13037 -14.87218 -14.60333 -14.40935 -13.96204 -13.65416 -13.50348 -13.34431 -13.16623 -12.97536 -12.90459 -12.71794 -12.52828 -12.47154 -12.25749 -12.12086 -12.06720 -12.01620 -11.98364 -11.67129 -11.04213 -10.92574 -10.16546 -9.80283 -9.36950 -9.02038 -8.30130 -6.85013 1.37505 1.40716 1.43180 1.54505 1.81582 2.23740 2.44985 2.78372 2.96669 3.26148 3.57054 3.61509 3.68327 3.87673 3.91874 4.06812 4.15586 4.20774 4.31252 4.38551 4.43437 4.48905 4.55718 4.58714 4.68652 4.74508 4.80104 4.85899 4.89131 4.91314 5.00232 5.03593 5.06496 5.26109 5.33283 5.41208 5.69595 5.75336 5.85721 6.09361 6.24812 6.38350 6.87415 6.99436 7.35622 8.43984 8.65379 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.033977 B = 0.003596 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.886309 B = 7783.499439 C = 8117.023811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.511 5.511 3 C 0.034 3.966 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.044 3.956 7 H 0.121 0.879 8 C 0.508 3.492 9 O -0.575 6.575 10 N -0.602 5.602 11 C 0.104 3.896 12 C 0.113 3.887 13 N -0.645 5.645 14 C 0.544 3.456 15 O -0.627 6.627 16 C -0.570 4.570 17 H 0.094 0.906 18 C 0.032 3.968 19 N -0.821 5.821 20 Si 0.992 3.008 21 H -0.255 1.255 22 H -0.276 1.276 23 H -0.254 1.254 24 C 0.104 3.896 25 C 0.102 3.898 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.274 0.726 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 18.834 -6.123 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.236 5.236 3 C -0.093 4.093 4 C -0.155 4.155 5 C -0.168 4.168 6 C -0.067 4.067 7 H 0.138 0.862 8 C 0.297 3.703 9 O -0.455 6.455 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.012 4.012 13 N -0.382 5.382 14 C 0.350 3.650 15 O -0.514 6.514 16 C -0.606 4.606 17 H 0.112 0.888 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.812 3.188 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.177 1.177 24 C -0.020 4.020 25 C -0.021 4.021 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.886 18.373 -6.617 19.740 hybrid contribution -0.985 -0.396 1.227 1.622 sum 1.901 17.977 -5.391 18.864 Atomic orbital electron populations 1.22756 0.87805 1.01265 1.02102 1.64150 1.08275 1.16046 1.35158 1.23264 0.96108 0.88038 1.01898 1.22747 0.97324 0.99570 0.95824 1.22832 0.99020 0.96558 0.98380 1.22978 0.93734 1.00372 0.89601 0.86160 1.21403 0.85914 0.81485 0.81483 1.90628 1.51137 1.51334 1.52352 1.48222 1.38398 1.05788 1.41044 1.21965 0.90408 0.98566 0.91065 1.21883 0.96485 0.89013 0.93773 1.48012 1.40516 1.05729 1.43921 1.18605 0.84689 0.80010 0.81674 1.90549 1.53757 1.51578 1.55522 1.21458 1.14108 0.93784 1.31237 0.88844 1.26926 0.98893 0.96192 0.96373 1.70165 1.35455 1.02318 1.37061 0.85148 0.77661 0.77458 0.78572 1.17928 1.20103 1.17747 1.21653 0.91171 0.97805 0.91398 1.22319 0.96784 0.89206 0.93785 0.94470 0.89739 0.93011 0.88083 0.93939 0.88833 0.88961 0.92126 0.88483 0.88309 0.91622 0.92412 0.88307 0.91580 0.90808 0.91691 0.91666 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.30 127.69 1.06 1.27 16 2 N -0.51 -10.81 5.44 -890.93 -4.85 -15.66 16 3 C 0.03 0.57 6.73 86.77 0.58 1.15 16 4 C -0.12 -1.59 7.08 32.07 0.23 -1.36 16 5 C -0.13 -2.37 6.45 31.86 0.21 -2.16 16 6 C 0.04 0.95 3.51 44.51 0.16 1.11 16 7 H 0.12 2.30 5.21 -2.39 -0.01 2.29 16 8 C 0.51 14.26 4.61 87.66 0.40 14.66 16 9 O -0.57 -19.25 13.61 -3.03 -0.04 -19.29 16 10 N -0.60 -17.57 2.95 -818.03 -2.41 -19.98 16 11 C 0.10 3.26 6.58 86.41 0.57 3.83 16 12 C 0.11 4.03 6.51 86.42 0.56 4.60 16 13 N -0.64 -28.17 2.95 -823.11 -2.43 -30.59 16 14 C 0.54 30.56 7.61 86.36 0.66 31.22 16 15 O -0.63 -40.75 14.47 -4.31 -0.06 -40.81 16 16 C -0.57 -31.14 8.85 24.83 0.22 -30.92 16 17 H 0.09 4.53 5.68 -2.91 -0.02 4.51 16 18 C 0.03 1.72 5.50 85.30 0.47 2.19 16 19 N -0.82 -49.26 11.84 21.83 0.26 -49.00 16 20 Si 0.99 39.98 29.56 68.60 2.03 42.01 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 C 0.10 3.73 6.58 86.41 0.57 4.30 16 25 C 0.10 2.86 6.51 86.42 0.56 3.43 16 26 H 0.04 1.02 5.96 -2.39 -0.01 1.01 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.34 7.23 -2.39 -0.02 1.32 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 0.78 7.70 -2.39 -0.02 0.77 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.37 7.40 -2.39 -0.02 1.35 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 2.99 7.03 -2.39 -0.02 2.97 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 3.66 5.30 -2.39 -0.01 3.65 16 39 H 0.27 14.99 8.29 -92.70 -0.77 14.22 16 40 H 0.07 3.02 7.02 -2.39 -0.02 3.00 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.13 2.65 5.07 -2.39 -0.01 2.64 16 Total: -1.00 -75.60 332.13 -0.24 -75.84 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.02 Total: 24.18 kcal Atomic # 6 Polarization: 27.06 SS G_CDS: 6.25 Total: 33.31 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -9.43 Total: -115.24 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.10 Total: -60.10 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -75.60 -0.24 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373472347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.901 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds