Wall clock time and date at job start Tue Mar 31 2020 03:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45750 * 117.94412 * 2 1 4 4 C 1.52920 * 110.48544 * 160.92788 * 3 2 1 5 5 C 1.53348 * 108.67884 * 50.74886 * 4 3 2 6 6 H 1.09002 * 109.66821 * 52.23567 * 5 4 3 7 7 C 1.50698 * 109.67624 * 172.73485 * 5 4 3 8 8 O 1.21283 * 119.99918 * 14.42393 * 7 5 4 9 9 N 1.34771 * 119.99926 * 194.42422 * 7 5 4 10 10 C 1.46963 * 120.59621 * 354.23820 * 9 7 5 11 11 C 1.53371 * 108.63490 * 125.04579 * 10 9 7 12 12 N 1.46970 * 108.63473 * 49.43001 * 11 10 9 13 13 C 1.36934 * 120.59722 * 124.74585 * 12 11 10 14 14 H 1.07996 * 119.99884 * 206.38587 * 13 12 11 15 15 C 1.38816 * 119.99775 * 26.39312 * 13 12 11 16 16 N 1.31625 * 119.99502 * 219.36007 * 15 13 12 17 17 Si 1.86797 * 120.00266 * 39.35828 * 15 13 12 18 18 H 1.48495 * 109.47191 * 91.82372 * 17 15 13 19 19 H 1.48498 * 109.47130 * 211.82993 * 17 15 13 20 20 H 1.48508 * 109.46977 * 331.82260 * 17 15 13 21 21 C 1.46962 * 118.80775 * 304.77439 * 12 11 10 22 22 C 1.46970 * 120.59184 * 174.51964 * 9 7 5 23 23 C 1.53069 * 108.42384 * 292.47198 * 5 4 3 24 24 C 1.33350 * 117.94428 * 179.97438 * 2 1 3 25 25 O 1.21288 * 118.25050 * 2.24713 * 24 2 1 26 26 H 1.08998 * 109.47688 * 90.00516 * 1 2 3 27 27 H 1.09008 * 109.47388 * 210.00092 * 1 2 3 28 28 H 1.08998 * 109.47589 * 329.99699 * 1 2 3 29 29 H 1.08998 * 109.30387 * 40.61331 * 3 2 1 30 30 H 1.08999 * 109.29966 * 281.23486 * 3 2 1 31 31 H 1.09002 * 109.60293 * 290.99444 * 4 3 2 32 32 H 1.09004 * 109.60562 * 170.50653 * 4 3 2 33 33 H 1.08994 * 109.61411 * 244.79425 * 10 9 7 34 34 H 1.09008 * 109.60792 * 5.31095 * 10 9 7 35 35 H 1.08996 * 109.61551 * 289.68527 * 11 10 9 36 36 H 1.09003 * 109.61278 * 169.17179 * 11 10 9 37 37 H 0.96998 * 119.99119 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.60949 * 295.47694 * 21 12 11 39 39 H 1.08999 * 109.75389 * 175.05176 * 21 12 11 40 40 H 1.08994 * 109.61214 * 354.69807 * 22 9 7 41 41 H 1.09008 * 109.60656 * 115.03922 * 22 9 7 42 42 H 1.09004 * 109.40112 * 169.02556 * 23 5 4 43 43 H 1.08997 * 109.39760 * 288.76840 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1259 0.4681 5 6 4.2493 -0.0014 -0.3397 6 1 4.1092 0.1816 -1.4051 7 6 5.7217 -0.0625 -0.0247 8 8 6.1599 0.5245 0.9419 9 7 6.5515 -0.7694 -0.8171 10 6 6.0199 -1.5872 -1.9164 11 6 6.7083 -1.1632 -3.2198 12 7 8.1606 -1.1351 -2.9962 13 6 9.0033 -1.8582 -3.7975 14 1 9.9592 -2.1875 -3.4178 15 6 8.6289 -2.1678 -5.0979 16 7 8.9110 -3.3515 -5.5997 17 14 7.7249 -0.9047 -6.1354 18 1 8.7076 -0.1083 -6.9134 19 1 6.8016 -1.5996 -7.0681 20 1 6.9466 -0.0020 -5.2495 21 6 8.6922 -0.3175 -1.8968 22 6 8.0038 -0.7413 -0.5934 23 6 3.5838 -1.3240 0.0486 24 6 2.0899 -1.1780 0.0005 25 8 1.4158 -2.1855 -0.0409 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6270 1.9718 0.6696 30 1 2.1397 1.6997 -1.0090 31 1 3.6101 0.8726 1.5281 32 1 4.1384 2.0564 0.3042 33 1 6.2235 -2.6399 -1.7209 34 1 4.9447 -1.4297 -2.0027 35 1 6.3636 -0.1707 -3.5096 36 1 6.4733 -1.8792 -4.0074 37 1 8.6490 -3.5679 -6.5083 38 1 8.4887 0.7354 -2.0924 39 1 9.7676 -0.4720 -1.8094 40 1 8.2389 -0.0253 0.1941 41 1 8.3482 -1.7333 -0.3007 42 1 3.8942 -2.1035 -0.6472 43 1 3.8880 -1.5996 1.0583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408214219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:07 Heat of formation + Delta-G solvation = -28.892667 kcal Electronic energy + Delta-G solvation = -25047.966377 eV Core-core repulsion = 21515.394236 eV Total energy + Delta-G solvation = -3532.572141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.01692 -39.64791 -37.27808 -36.42730 -34.46336 -33.88960 -31.67054 -30.78472 -29.92417 -27.92257 -27.00737 -24.95406 -23.93479 -23.25626 -22.67155 -20.62603 -18.93297 -18.82194 -17.48160 -16.83268 -16.69562 -16.33962 -15.99586 -15.47039 -15.15267 -14.75785 -14.53188 -14.33945 -14.01491 -13.73017 -13.59356 -13.44758 -12.95131 -12.86718 -12.62314 -12.55717 -12.22945 -12.07016 -11.95427 -11.75172 -11.28082 -11.25155 -11.02868 -10.83429 -10.53854 -10.43878 -10.26885 -10.19060 -9.57634 -9.41838 -9.01273 -8.77855 -8.28187 -7.09301 -6.17372 -3.33300 2.42723 2.67141 2.77474 3.15596 3.31827 3.44235 3.49083 4.20889 4.33779 4.38764 4.46996 4.52760 4.75572 4.85819 4.96614 4.99766 5.07098 5.15796 5.25084 5.28891 5.38938 5.42738 5.54853 5.56086 5.60065 5.69158 5.74547 5.86612 5.90257 6.00980 6.03948 6.09371 6.18679 6.45588 6.52156 6.68298 6.83840 7.16267 7.65451 7.81477 7.92843 8.18405 8.30403 8.82182 9.60827 10.01015 10.96749 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.004499 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.051700 B = 6222.427288 C = 6891.822808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.113 3.887 4 C -0.114 4.114 5 C -0.113 4.113 6 H 0.103 0.897 7 C 0.518 3.482 8 O -0.551 6.551 9 N -0.595 5.595 10 C 0.081 3.919 11 C 0.132 3.868 12 N -0.598 5.598 13 C -0.281 4.281 14 H 0.083 0.917 15 C 0.044 3.956 16 N -0.871 5.871 17 Si 0.830 3.170 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.260 1.260 21 C 0.133 3.867 22 C 0.095 3.905 23 C -0.127 4.127 24 C 0.522 3.478 25 O -0.551 6.551 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.264 0.736 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 9.230 11.006 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C -0.010 4.010 4 C -0.152 4.152 5 C -0.134 4.134 6 H 0.121 0.879 7 C 0.305 3.695 8 O -0.430 6.430 9 N -0.327 5.327 10 C -0.044 4.044 11 C 0.005 3.995 12 N -0.321 5.321 13 C -0.408 4.408 14 H 0.100 0.900 15 C -0.158 4.158 16 N -0.510 5.510 17 Si 0.657 3.343 18 H -0.218 1.218 19 H -0.220 1.220 20 H -0.185 1.185 21 C 0.006 3.994 22 C -0.028 4.028 23 C -0.167 4.167 24 C 0.310 3.690 25 O -0.429 6.429 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.870 8.857 11.332 19.981 hybrid contribution -0.389 0.749 -1.028 1.330 sum -14.260 9.605 10.304 20.044 Atomic orbital electron populations 1.21712 0.79454 1.03177 1.02165 1.47263 1.07543 1.06207 1.73257 1.21510 0.93105 0.84343 1.02024 1.21713 0.93412 0.99273 1.00812 1.21444 0.92894 0.96389 1.02700 0.87887 1.20264 0.87775 0.78876 0.82555 1.90657 1.77765 1.46483 1.28126 1.48040 1.07517 1.46051 1.31067 1.22648 0.97635 0.95559 0.88529 1.21675 0.84653 0.99124 0.94083 1.44266 1.00806 1.52912 1.34115 1.18738 1.02416 1.26961 0.92641 0.89985 1.25200 0.97440 0.96142 0.97035 1.70169 1.46953 1.17508 1.16393 0.87647 0.79712 0.85138 0.81840 1.21834 1.22039 1.18475 1.21342 0.97598 0.93485 0.86981 1.22237 0.78815 1.02172 0.99586 1.21745 0.90897 0.98170 1.05866 1.20000 0.90541 0.82727 0.75711 1.90730 1.66190 1.35763 1.50208 0.92538 0.90284 0.91255 0.90121 0.91289 0.89967 0.88869 0.90510 0.90604 0.95093 0.90290 0.92621 0.95676 0.90661 0.89715 0.91397 0.87038 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.22 59.85 0.61 1.24 16 2 N -0.61 -5.98 3.21 -182.86 -0.59 -6.57 16 3 C 0.11 0.83 6.39 -4.49 -0.03 0.80 16 4 C -0.11 -1.05 4.63 -26.59 -0.12 -1.17 16 5 C -0.11 -1.27 1.71 -91.56 -0.16 -1.42 16 6 H 0.10 1.09 7.16 -51.93 -0.37 0.72 16 7 C 0.52 7.63 6.91 -10.99 -0.08 7.56 16 8 O -0.55 -9.49 15.55 5.55 0.09 -9.41 16 9 N -0.60 -9.44 2.95 -172.48 -0.51 -9.95 16 10 C 0.08 1.28 5.78 -3.60 -0.02 1.26 16 11 C 0.13 2.61 4.59 -3.59 -0.02 2.59 16 12 N -0.60 -13.28 2.71 -172.04 -0.47 -13.75 16 13 C -0.28 -7.38 9.82 -15.06 -0.15 -7.53 16 14 H 0.08 2.30 8.05 -52.49 -0.42 1.88 16 15 C 0.04 1.20 4.74 -17.43 -0.08 1.11 16 16 N -0.87 -25.18 13.97 55.49 0.78 -24.41 16 17 Si 0.83 20.12 26.63 -169.99 -4.53 15.59 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -5.95 5.10 56.52 0.29 -5.66 16 21 C 0.13 2.48 6.67 -3.60 -0.02 2.46 16 22 C 0.10 1.58 6.58 -3.59 -0.02 1.56 16 23 C -0.13 -1.45 5.02 -28.10 -0.14 -1.59 16 24 C 0.52 6.53 7.47 -11.87 -0.09 6.44 16 25 O -0.55 -8.85 16.21 5.55 0.09 -8.76 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.76 7.20 -51.92 -0.37 0.38 16 28 H 0.07 0.37 7.86 -51.93 -0.41 -0.03 16 29 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 0.98 4.51 -51.92 -0.23 0.75 16 35 H 0.03 0.62 6.86 -51.93 -0.36 0.26 16 36 H 0.08 1.70 5.72 -51.93 -0.30 1.40 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 40 H 0.08 1.36 7.03 -51.93 -0.36 0.99 16 41 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 42 H 0.11 1.29 6.22 -51.93 -0.32 0.97 16 43 H 0.11 1.20 8.09 -51.93 -0.42 0.78 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -32.78 330.88 -7.07 -39.85 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.60 Total: -0.89 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: -0.32 Total: 13.31 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.79 Total: -54.68 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.53 Total: 15.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.78 -7.07 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408214219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.953 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds