Wall clock time and date at job start Tue Mar 31 2020 03:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00040 * 2 1 4 4 C 1.46900 * 110.99673 * 123.94780 * 2 1 3 5 5 C 1.50700 * 109.47253 * 170.00275 * 4 2 1 6 6 C 1.32989 * 120.00351 * 128.62100 * 5 4 2 7 7 C 1.47102 * 119.99913 * 13.16021 * 6 5 4 8 8 O 1.21614 * 120.00165 * 6.84459 * 7 6 5 9 9 N 1.34783 * 120.00045 * 186.84600 * 7 6 5 10 10 C 1.46965 * 120.59199 * 186.02538 * 9 7 6 11 11 C 1.53372 * 108.63684 * 235.20411 * 10 9 7 12 12 N 1.46964 * 108.63440 * 310.58439 * 11 10 9 13 13 C 1.34783 * 120.59021 * 235.20292 * 12 11 10 14 14 O 1.21682 * 119.99819 * 355.06839 * 13 12 11 15 15 C 1.46367 * 119.99942 * 175.07068 * 13 12 11 16 16 H 1.07999 * 120.00248 * 27.36219 * 15 13 12 17 17 C 1.40046 * 120.00263 * 207.35866 * 15 13 12 18 18 N 1.30672 * 120.00342 * 177.91281 * 17 15 13 19 19 Si 1.86801 * 119.99838 * 357.90885 * 17 15 13 20 20 H 1.48501 * 109.47450 * 274.65164 * 19 17 15 21 21 H 1.48506 * 109.47076 * 34.65079 * 19 17 15 22 22 H 1.48498 * 109.47366 * 154.64825 * 19 17 15 23 23 C 1.46957 * 118.81539 * 55.47678 * 12 11 10 24 24 C 1.46956 * 120.59243 * 6.00971 * 9 7 6 25 25 H 1.08999 * 109.47390 * 296.05456 * 1 2 3 26 26 H 1.09000 * 109.46926 * 56.05260 * 1 2 3 27 27 H 1.09000 * 109.47288 * 176.04817 * 1 2 3 28 28 H 1.09005 * 109.46719 * 183.95193 * 3 2 1 29 29 H 1.09002 * 109.46889 * 303.94503 * 3 2 1 30 30 H 1.08992 * 109.47659 * 63.94667 * 3 2 1 31 31 H 1.08999 * 109.47537 * 50.00132 * 4 2 1 32 32 H 1.09004 * 109.47573 * 290.00307 * 4 2 1 33 33 H 1.08000 * 119.99826 * 308.61975 * 5 4 2 34 34 H 1.08000 * 120.00506 * 193.16260 * 6 5 4 35 35 H 1.09006 * 109.60525 * 115.46149 * 10 9 7 36 36 H 1.09001 * 109.61239 * 354.95769 * 10 9 7 37 37 H 1.08996 * 109.61025 * 190.83689 * 11 10 9 38 38 H 1.08997 * 109.60628 * 70.32264 * 11 10 9 39 39 H 0.97006 * 120.00238 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.61574 * 64.26289 * 23 12 11 41 41 H 1.09005 * 109.61329 * 184.77840 * 23 12 11 42 42 H 1.08999 * 109.61069 * 244.53878 * 24 9 7 43 43 H 1.09003 * 109.61323 * 5.04820 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.4817 -0.9524 0.9731 6 6 4.3059 -0.6344 1.9672 7 6 3.7707 -0.3796 3.3134 8 8 2.5943 -0.5800 3.5481 9 7 4.5839 0.0761 4.2869 10 6 4.0966 0.2101 5.6669 11 6 4.3292 1.6533 6.1309 12 7 5.7193 2.0246 5.8313 13 6 6.5325 2.4802 6.8047 14 8 6.0941 2.6724 7.9234 15 6 7.9430 2.7439 6.5161 16 1 8.2492 3.0079 5.5147 17 6 8.8957 2.6540 7.5387 18 7 10.1601 2.8493 7.2728 19 14 8.3590 2.2549 9.2828 20 1 7.9539 3.5050 9.9745 21 1 7.2092 1.3158 9.2443 22 1 9.4869 1.6265 10.0164 23 6 6.2048 1.8960 4.4502 24 6 5.9739 0.4474 3.9873 25 1 -0.3634 0.4514 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8525 30 1 1.7043 1.8724 0.9231 31 1 1.5089 -1.7405 1.1759 32 1 1.7974 -0.2246 2.0629 33 1 3.8775 -1.3444 0.0479 34 1 5.3682 -0.5633 1.7861 35 1 4.6423 -0.4752 6.3156 36 1 3.0315 -0.0186 5.7026 37 1 4.1546 1.7251 7.2043 38 1 3.6500 2.3216 5.6017 39 1 10.8200 2.7867 7.9810 40 1 5.6560 2.5811 3.8041 41 1 7.2692 2.1281 4.4135 42 1 6.6533 -0.2209 4.5165 43 1 6.1486 0.3756 2.9138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493595752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:46 Heat of formation + Delta-G solvation = -23.947690 kcal Electronic energy + Delta-G solvation = -24324.774784 eV Core-core repulsion = 20792.417074 eV Total energy + Delta-G solvation = -3532.357711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29350 -38.59132 -37.50184 -36.21847 -33.51640 -33.23142 -32.90285 -31.16356 -28.05559 -27.72801 -27.26909 -26.15290 -23.73858 -23.00444 -21.96191 -21.02664 -19.52987 -18.28759 -17.49403 -16.63835 -16.00869 -15.75543 -15.59433 -15.36376 -15.03573 -14.90564 -14.68000 -14.44619 -14.01920 -13.88349 -13.30260 -13.22205 -12.65014 -12.59178 -12.40894 -12.27529 -12.24611 -11.89421 -11.83680 -11.82492 -11.55896 -11.15154 -11.08228 -11.01426 -10.84053 -10.41952 -9.67166 -9.63833 -9.56092 -9.06936 -8.74965 -8.31308 -8.06656 -7.56376 -6.66985 -4.88346 1.21628 3.03977 3.20020 3.38848 3.42061 3.66169 3.88602 4.08261 4.11302 4.44231 4.56108 4.71825 4.98184 5.07517 5.16499 5.20299 5.24954 5.27225 5.34044 5.36270 5.42829 5.51996 5.57363 5.64995 5.71862 5.73472 5.74691 5.80089 5.97380 6.12665 6.15476 6.19613 6.28334 6.34029 6.62102 6.81226 6.86583 6.95831 7.47351 7.51791 7.78531 8.20351 8.22742 8.62616 9.02126 9.88881 10.34544 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.003354 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.837237 B = 8345.697895 C = 8578.512959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.038 3.962 5 C -0.049 4.049 6 C -0.222 4.222 7 C 0.544 3.456 8 O -0.548 6.548 9 N -0.601 5.601 10 C 0.099 3.901 11 C 0.106 3.894 12 N -0.632 5.632 13 C 0.559 3.441 14 O -0.609 6.609 15 C -0.536 4.536 16 H 0.092 0.908 17 C 0.102 3.898 18 N -0.833 5.833 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.258 1.258 22 H -0.317 1.317 23 C 0.107 3.893 24 C 0.090 3.910 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.282 0.718 40 H 0.051 0.949 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 -7.062 -14.291 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.125 4.125 4 C -0.088 4.088 5 C -0.069 4.069 6 C -0.244 4.244 7 C 0.336 3.664 8 O -0.430 6.430 9 N -0.332 5.332 10 C -0.025 4.025 11 C -0.019 4.019 12 N -0.367 5.367 13 C 0.367 3.633 14 O -0.499 6.499 15 C -0.572 4.572 16 H 0.109 0.891 17 C -0.115 4.115 18 N -0.464 5.464 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.183 1.183 22 H -0.248 1.248 23 C -0.018 4.018 24 C -0.034 4.034 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.896 -7.251 -13.982 19.738 hybrid contribution -0.124 0.259 1.221 1.254 sum -12.020 -6.991 -12.761 18.874 Atomic orbital electron populations 1.22331 0.87186 1.02130 1.00491 1.61918 1.07882 1.13867 1.43771 1.22393 1.00828 0.88826 1.00409 1.22138 0.92111 1.00099 0.94441 1.23625 0.95348 0.90320 0.97638 1.22763 1.01073 1.07323 0.93198 1.18695 0.85406 0.76807 0.85519 1.90574 1.15912 1.54485 1.82030 1.48037 1.12739 1.63491 1.08978 1.22068 1.01003 0.98022 0.81369 1.21612 0.84741 0.93181 1.02364 1.47806 1.10845 1.69431 1.08619 1.18458 0.86886 0.75759 0.82190 1.90310 1.76248 1.60043 1.23286 1.20665 0.88697 1.49288 0.98565 0.89057 1.25654 0.93947 0.90249 1.01612 1.69520 1.01784 1.39227 1.35823 0.85530 0.75858 0.80347 0.79932 1.20270 1.18279 1.24781 1.21966 1.02655 0.93613 0.83523 1.22452 0.81683 0.97957 1.01315 0.95479 0.91498 0.91457 0.91363 0.91581 0.95524 0.89849 0.88042 0.85478 0.84774 0.91141 0.88699 0.88466 0.93082 0.90788 0.93071 0.86850 0.90387 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.57 60.06 0.57 0.81 16 2 N -0.55 -5.72 5.01 -252.72 -1.27 -6.99 16 3 C 0.02 0.23 9.37 60.07 0.56 0.80 16 4 C 0.04 0.43 4.63 -4.98 -0.02 0.41 16 5 C -0.05 -0.49 8.68 -36.13 -0.31 -0.81 16 6 C -0.22 -2.41 9.21 -37.81 -0.35 -2.76 16 7 C 0.54 7.68 7.46 -12.66 -0.09 7.58 16 8 O -0.55 -8.95 12.59 5.27 0.07 -8.89 16 9 N -0.60 -8.72 2.95 -173.60 -0.51 -9.23 16 10 C 0.10 1.54 6.60 -3.60 -0.02 1.52 16 11 C 0.11 1.89 6.58 -3.60 -0.02 1.87 16 12 N -0.63 -12.94 2.94 -173.88 -0.51 -13.45 16 13 C 0.56 14.21 7.13 -12.99 -0.09 14.12 16 14 O -0.61 -17.06 11.98 5.20 0.06 -16.99 16 15 C -0.54 -14.31 9.11 -35.64 -0.32 -14.64 16 16 H 0.09 2.40 6.38 -52.49 -0.34 2.07 16 17 C 0.10 2.81 5.52 -17.37 -0.10 2.72 16 18 N -0.83 -22.86 13.92 55.55 0.77 -22.09 16 19 Si 0.95 24.35 26.14 -169.99 -4.44 19.91 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.90 6.39 56.52 0.36 -6.54 16 22 H -0.32 -7.72 7.11 56.52 0.40 -7.32 16 23 C 0.11 1.76 6.53 -3.37 -0.02 1.74 16 24 C 0.09 1.20 6.49 -3.37 -0.02 1.18 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 27 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.07 0.65 7.28 -51.93 -0.38 0.27 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.10 1.43 4.68 -53.39 -0.25 1.18 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.16 6.09 -52.49 -0.32 0.84 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.44 6.99 -51.93 -0.36 1.07 16 37 H 0.10 1.89 7.02 -51.93 -0.36 1.52 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.28 7.16 8.29 -40.82 -0.34 6.82 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.99 5.48 -51.93 -0.28 1.70 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.91 5.43 -51.93 -0.28 0.63 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -32.02 340.00 -7.35 -39.37 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.40 Total: -1.30 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -0.25 Total: 14.54 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -1.52 Total: -51.75 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.13 Total: -25.88 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.44 Total: 19.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -7.35 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493595752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.424 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds