Wall clock time and date at job start Tue Mar 31 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 119.99897 * 2 1 4 4 H 1.07996 * 119.99849 * 163.12615 * 3 2 1 5 5 C 1.38808 * 119.99887 * 343.40184 * 3 2 1 6 6 N 1.31620 * 120.00321 * 344.61948 * 5 3 2 7 7 Si 1.86802 * 119.99940 * 164.62380 * 5 3 2 8 8 H 1.48499 * 109.47182 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47318 * 119.99850 * 7 5 3 10 10 H 1.48506 * 109.47066 * 239.99784 * 7 5 3 11 11 C 1.46499 * 119.99985 * 180.02562 * 2 1 3 12 12 N 1.46508 * 109.46954 * 269.99784 * 11 2 1 13 13 C 1.47262 * 125.57699 * 90.00213 * 12 11 2 14 14 C 1.53519 * 103.53059 * 179.97438 * 13 12 11 15 15 C 1.52590 * 110.51333 * 240.59063 * 14 13 12 16 16 N 1.47117 * 108.95703 * 237.70817 * 15 14 13 17 17 C 1.46928 * 111.00018 * 298.39785 * 16 15 14 18 18 C 1.53116 * 109.59372 * 62.26561 * 17 16 15 19 19 C 1.52907 * 110.33590 * 119.09771 * 14 13 12 20 20 C 1.53536 * 108.52276 * 62.59688 * 19 14 13 21 21 C 1.46961 * 110.92286 * 62.16684 * 16 15 14 22 22 O 1.45096 * 104.60542 * 359.97438 * 14 13 12 23 23 C 1.33975 * 109.21214 * 359.77821 * 22 14 13 24 24 O 1.21512 * 123.09465 * 180.26349 * 23 22 14 25 25 H 1.09000 * 109.46847 * 84.93195 * 1 2 3 26 26 H 1.09000 * 109.47085 * 204.93594 * 1 2 3 27 27 H 1.09003 * 109.47042 * 324.93637 * 1 2 3 28 28 H 0.97000 * 120.00302 * 180.02562 * 6 5 3 29 29 H 1.08992 * 109.47307 * 29.99895 * 11 2 1 30 30 H 1.09004 * 109.47007 * 150.00252 * 11 2 1 31 31 H 1.09001 * 110.60888 * 298.47897 * 13 12 11 32 32 H 1.08997 * 110.61108 * 61.45613 * 13 12 11 33 33 H 1.08998 * 109.55707 * 357.54990 * 15 14 13 34 34 H 1.09000 * 109.56164 * 117.86558 * 15 14 13 35 35 H 1.08997 * 109.44895 * 302.23225 * 17 16 15 36 36 H 1.08999 * 109.45324 * 182.30426 * 17 16 15 37 37 H 1.08991 * 109.58896 * 239.67753 * 18 17 16 38 38 H 1.09005 * 109.58176 * 119.26091 * 18 17 16 39 39 H 1.08995 * 110.24773 * 301.74934 * 19 14 13 40 40 H 1.08995 * 109.57305 * 178.17304 * 20 19 14 41 41 H 1.09003 * 109.57630 * 298.56405 * 20 19 14 42 42 H 1.09002 * 109.45460 * 57.99143 * 21 16 15 43 43 H 1.09006 * 109.45236 * 177.95014 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1948 1.2061 0.2715 5 6 1.4990 2.3630 -0.3434 6 7 0.3333 2.3169 -0.9529 7 14 2.2777 4.0125 0.0594 8 1 3.5786 3.7925 0.7409 9 1 2.4985 4.7753 -1.1954 10 1 1.3747 4.7810 0.9535 11 6 2.1975 -1.2687 -0.0006 12 7 2.4417 -1.6922 1.3805 13 6 1.5472 -2.5388 2.1880 14 6 2.2838 -2.6625 3.5293 15 6 2.6074 -4.1233 3.8288 16 7 2.0001 -4.4929 5.1167 17 6 2.5502 -3.6809 6.2107 18 6 2.2182 -2.2054 5.9720 19 6 1.4324 -2.0813 4.6586 20 6 0.1399 -2.9029 4.7674 21 6 0.5364 -4.3738 5.0602 22 8 3.4989 -1.8895 3.3521 23 6 3.5192 -1.3777 2.1141 24 8 4.4289 -0.6893 1.6957 25 1 -0.3633 0.0908 -1.0237 26 1 -0.3633 -0.9319 0.4333 27 1 -0.3633 0.8412 0.5904 28 1 -0.1212 3.1395 -1.1932 29 1 1.6085 -2.0281 -0.5147 30 1 3.1499 -1.1381 -0.5143 31 1 0.5804 -2.0544 2.3245 32 1 1.4250 -3.5182 1.7255 33 1 2.2022 -4.7561 3.0393 34 1 3.6882 -4.2536 3.8843 35 1 3.6321 -3.8080 6.2484 36 1 2.1141 -4.0027 7.1564 37 1 3.1411 -1.6300 5.9013 38 1 1.6129 -1.8290 6.7968 39 1 1.1992 -1.0361 4.4556 40 1 -0.4661 -2.5229 5.5898 41 1 -0.4193 -2.8293 3.8347 42 1 0.1509 -5.0092 4.2629 43 1 0.1096 -4.6875 6.0129 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496463515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:28 Heat of formation + Delta-G solvation = -23.507625 kcal Electronic energy + Delta-G solvation = -25893.970108 eV Core-core repulsion = 22361.631479 eV Total energy + Delta-G solvation = -3532.338628 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94590 -39.62890 -36.45061 -35.95335 -33.96754 -32.43313 -31.46539 -30.88235 -30.49755 -26.85847 -25.83460 -25.01932 -23.47366 -23.22054 -22.28354 -21.87165 -20.13355 -17.95335 -17.11546 -17.08123 -16.87684 -16.24543 -15.90436 -15.57794 -14.97661 -14.70143 -14.15063 -13.82318 -13.49757 -13.30716 -13.23388 -13.13937 -13.00382 -12.58539 -12.44817 -12.23358 -12.05041 -11.94681 -11.73189 -11.41601 -11.09638 -11.01592 -10.86225 -10.74522 -10.53025 -10.44685 -10.21293 -10.02747 -9.99585 -9.77868 -8.68728 -8.53239 -8.29563 -7.11187 -5.83700 -3.25151 3.05536 3.38088 3.42660 3.45277 3.53738 3.71031 3.77842 4.25091 4.30854 4.47436 4.54263 4.73421 4.78170 4.88794 4.95993 5.02380 5.18345 5.19647 5.36481 5.39888 5.43127 5.52754 5.56023 5.59956 5.67312 5.71371 5.77451 5.85744 5.91883 5.99676 6.07558 6.24037 6.48705 6.52408 6.75533 6.80781 7.08281 7.33061 7.56725 7.86236 8.02707 8.25129 8.76605 9.13621 9.72612 10.14755 11.21755 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.004781 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.719050 B = 5854.786876 C = 5985.355248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.580 5.580 3 C -0.259 4.259 4 H 0.082 0.918 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.372 3.628 12 N -0.628 5.628 13 C 0.076 3.924 14 C 0.070 3.930 15 C 0.055 3.945 16 N -0.522 5.522 17 C 0.051 3.949 18 C -0.147 4.147 19 C -0.089 4.089 20 C -0.149 4.149 21 C 0.048 3.952 22 O -0.332 6.332 23 C 0.637 3.363 24 O -0.525 6.525 25 H 0.036 0.964 26 H -0.004 1.004 27 H 0.050 0.950 28 H 0.253 0.747 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -15.776 12.186 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.301 5.301 3 C -0.388 4.388 4 H 0.100 0.900 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.199 1.199 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.165 3.835 12 N -0.383 5.383 13 C -0.050 4.050 14 C 0.030 3.970 15 C -0.074 4.074 16 N -0.242 5.242 17 C -0.077 4.077 18 C -0.186 4.186 19 C -0.108 4.108 20 C -0.188 4.188 21 C -0.080 4.080 22 O -0.242 6.242 23 C 0.389 3.611 24 O -0.410 6.410 25 H 0.054 0.946 26 H 0.015 0.985 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.894 -15.721 12.100 19.929 hybrid contribution -0.162 2.029 0.070 2.037 sum -2.056 -13.692 12.170 18.434 Atomic orbital electron populations 1.20957 0.82247 0.95668 0.99935 1.44734 1.02569 1.01749 1.81052 1.19523 0.95562 0.84092 1.39642 0.89971 1.24931 0.97211 0.98455 0.98734 1.70125 1.16582 1.26512 1.42016 0.86167 0.78940 0.83662 0.77842 1.19930 1.21524 1.21571 1.20768 0.97114 0.87257 0.78381 1.51064 1.19164 1.51465 1.16613 1.22873 0.95940 0.96660 0.89500 1.23356 0.83863 0.93531 0.96226 1.22613 1.01916 0.90654 0.92220 1.62727 1.05157 1.52753 1.03598 1.22226 1.00684 0.90549 0.94227 1.22204 1.01197 0.98534 0.96619 1.21372 0.94512 1.00801 0.94115 1.22697 0.96477 0.96501 1.03106 1.22635 0.87693 0.94978 1.02735 1.87223 1.40777 1.64016 1.32220 1.18918 0.83861 0.79112 0.79168 1.90999 1.38666 1.39924 1.71387 0.94564 0.98545 0.93119 0.93677 0.91348 0.89916 0.89842 0.90076 0.88811 0.88808 0.90375 0.90461 0.90607 0.91286 0.89302 0.90738 0.90540 0.90331 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 8.97 59.85 0.54 4.20 16 2 N -0.58 -14.38 3.17 -184.86 -0.59 -14.97 16 3 C -0.26 -7.34 9.71 -15.06 -0.15 -7.49 16 4 H 0.08 2.47 7.67 -52.49 -0.40 2.07 16 5 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 6 N -0.91 -26.17 10.48 55.49 0.58 -25.59 16 7 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 8 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 11 C 0.37 7.61 6.53 -63.74 -0.42 7.20 16 12 N -0.63 -11.81 3.21 -182.70 -0.59 -12.39 16 13 C 0.08 1.05 6.41 -3.36 -0.02 1.03 16 14 C 0.07 0.94 0.80 -90.61 -0.07 0.87 16 15 C 0.05 0.59 5.66 -3.92 -0.02 0.57 16 16 N -0.52 -5.03 5.24 -233.15 -1.22 -6.26 16 17 C 0.05 0.48 6.07 -3.75 -0.02 0.46 16 18 C -0.15 -1.59 5.65 -26.38 -0.15 -1.74 16 19 C -0.09 -1.07 2.56 -90.10 -0.23 -1.30 16 20 C -0.15 -1.36 5.68 -25.33 -0.14 -1.50 16 21 C 0.05 0.39 6.12 -2.67 -0.02 0.37 16 22 O -0.33 -6.01 9.93 -38.35 -0.38 -6.39 16 23 C 0.64 13.58 8.85 53.75 0.48 14.06 16 24 O -0.53 -13.49 17.35 -19.10 -0.33 -13.82 16 25 H 0.04 0.91 7.51 -51.93 -0.39 0.52 16 26 H 0.00 -0.08 8.01 -51.93 -0.42 -0.49 16 27 H 0.05 1.31 6.95 -51.93 -0.36 0.95 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.08 1.80 7.82 -51.93 -0.41 1.40 16 31 H 0.08 1.18 6.55 -51.93 -0.34 0.84 16 32 H 0.08 0.90 7.10 -51.93 -0.37 0.53 16 33 H 0.09 0.87 7.05 -51.93 -0.37 0.50 16 34 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.96 7.83 -51.93 -0.41 0.55 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.70 6.66 -51.93 -0.35 0.35 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -33.06 332.86 -9.58 -42.65 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.73 Total: -2.79 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: -0.32 Total: 16.77 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -1.81 Total: -59.21 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.71 Total: -20.21 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.06 -9.58 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496463515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.139 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds