Wall clock time and date at job start Tue Mar 31 2020 03:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 119.99897 * 2 1 4 4 H 1.07996 * 119.99849 * 163.12615 * 3 2 1 5 5 C 1.38808 * 119.99887 * 343.40184 * 3 2 1 6 6 N 1.31620 * 120.00321 * 344.61948 * 5 3 2 7 7 Si 1.86802 * 119.99940 * 164.62380 * 5 3 2 8 8 H 1.48499 * 109.47182 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47318 * 119.99850 * 7 5 3 10 10 H 1.48506 * 109.47066 * 239.99784 * 7 5 3 11 11 C 1.46499 * 119.99985 * 180.02562 * 2 1 3 12 12 N 1.46508 * 109.46954 * 269.99784 * 11 2 1 13 13 C 1.47262 * 125.57699 * 90.00213 * 12 11 2 14 14 C 1.53519 * 103.53059 * 179.97438 * 13 12 11 15 15 C 1.52590 * 110.51333 * 240.59063 * 14 13 12 16 16 N 1.47117 * 108.95703 * 237.70817 * 15 14 13 17 17 C 1.46928 * 111.00018 * 298.39785 * 16 15 14 18 18 C 1.53116 * 109.59372 * 62.26561 * 17 16 15 19 19 C 1.52907 * 110.33590 * 119.09771 * 14 13 12 20 20 C 1.53536 * 108.52276 * 62.59688 * 19 14 13 21 21 C 1.46961 * 110.92286 * 62.16684 * 16 15 14 22 22 O 1.45096 * 104.60542 * 359.97438 * 14 13 12 23 23 C 1.33975 * 109.21214 * 359.77821 * 22 14 13 24 24 O 1.21512 * 123.09465 * 180.26349 * 23 22 14 25 25 H 1.09000 * 109.46847 * 84.93195 * 1 2 3 26 26 H 1.09000 * 109.47085 * 204.93594 * 1 2 3 27 27 H 1.09003 * 109.47042 * 324.93637 * 1 2 3 28 28 H 0.97000 * 120.00302 * 180.02562 * 6 5 3 29 29 H 1.08992 * 109.47307 * 29.99895 * 11 2 1 30 30 H 1.09004 * 109.47007 * 150.00252 * 11 2 1 31 31 H 1.09001 * 110.60888 * 298.47897 * 13 12 11 32 32 H 1.08997 * 110.61108 * 61.45613 * 13 12 11 33 33 H 1.08998 * 109.55707 * 357.54990 * 15 14 13 34 34 H 1.09000 * 109.56164 * 117.86558 * 15 14 13 35 35 H 1.08997 * 109.44895 * 302.23225 * 17 16 15 36 36 H 1.08999 * 109.45324 * 182.30426 * 17 16 15 37 37 H 1.08991 * 109.58896 * 239.67753 * 18 17 16 38 38 H 1.09005 * 109.58176 * 119.26091 * 18 17 16 39 39 H 1.08995 * 110.24773 * 301.74934 * 19 14 13 40 40 H 1.08995 * 109.57305 * 178.17304 * 20 19 14 41 41 H 1.09003 * 109.57630 * 298.56405 * 20 19 14 42 42 H 1.09002 * 109.45460 * 57.99143 * 21 16 15 43 43 H 1.09006 * 109.45236 * 177.95014 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1948 1.2061 0.2715 5 6 1.4990 2.3630 -0.3434 6 7 0.3333 2.3169 -0.9529 7 14 2.2777 4.0125 0.0594 8 1 3.5786 3.7925 0.7409 9 1 2.4985 4.7753 -1.1954 10 1 1.3747 4.7810 0.9535 11 6 2.1975 -1.2687 -0.0006 12 7 2.4417 -1.6922 1.3805 13 6 1.5472 -2.5388 2.1880 14 6 2.2838 -2.6625 3.5293 15 6 2.6074 -4.1233 3.8288 16 7 2.0001 -4.4929 5.1167 17 6 2.5502 -3.6809 6.2107 18 6 2.2182 -2.2054 5.9720 19 6 1.4324 -2.0813 4.6586 20 6 0.1399 -2.9029 4.7674 21 6 0.5364 -4.3738 5.0602 22 8 3.4989 -1.8895 3.3521 23 6 3.5192 -1.3777 2.1141 24 8 4.4289 -0.6893 1.6957 25 1 -0.3633 0.0908 -1.0237 26 1 -0.3633 -0.9319 0.4333 27 1 -0.3633 0.8412 0.5904 28 1 -0.1212 3.1395 -1.1932 29 1 1.6085 -2.0281 -0.5147 30 1 3.1499 -1.1381 -0.5143 31 1 0.5804 -2.0544 2.3245 32 1 1.4250 -3.5182 1.7255 33 1 2.2022 -4.7561 3.0393 34 1 3.6882 -4.2536 3.8843 35 1 3.6321 -3.8080 6.2484 36 1 2.1141 -4.0027 7.1564 37 1 3.1411 -1.6300 5.9013 38 1 1.6129 -1.8290 6.7968 39 1 1.1992 -1.0361 4.4556 40 1 -0.4661 -2.5229 5.5898 41 1 -0.4193 -2.8293 3.8347 42 1 0.1509 -5.0092 4.2629 43 1 0.1096 -4.6875 6.0129 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496463515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:26 Heat of formation + Delta-G solvation = -46.822302 kcal Electronic energy + Delta-G solvation = -25894.981108 eV Core-core repulsion = 22361.631479 eV Total energy + Delta-G solvation = -3533.349628 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.15276 -40.81239 -38.07876 -37.75551 -35.65038 -33.36594 -33.03712 -32.09580 -31.52091 -28.42888 -27.82070 -26.38475 -24.32394 -24.04944 -23.71145 -23.35591 -21.69279 -19.05413 -18.94205 -18.25089 -18.09827 -17.75771 -17.10435 -16.85306 -16.56323 -16.17182 -15.68931 -15.52371 -15.07432 -14.67872 -14.54746 -14.05434 -13.89992 -13.80692 -13.74162 -13.34522 -13.29203 -13.08052 -12.97662 -12.87921 -12.71159 -12.64798 -12.41100 -12.14669 -12.04800 -12.01633 -11.88352 -11.65229 -11.26607 -11.12265 -10.78694 -9.95526 -9.29105 -9.12814 -7.97624 -5.41054 1.32743 1.37012 1.49485 1.58600 1.82323 2.41527 2.51360 2.93179 3.17510 3.22216 3.32532 3.54324 3.63442 3.82024 3.88261 4.01265 4.12516 4.14864 4.28274 4.35375 4.38467 4.43781 4.52966 4.66099 4.76429 4.77997 4.83755 4.88999 4.99683 5.04258 5.06996 5.13942 5.15488 5.25281 5.27952 5.54487 5.61988 5.71171 5.98418 6.08484 6.18541 6.51192 7.03083 7.11967 7.70729 8.06824 9.04970 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.004781 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.719050 B = 5854.786876 C = 5985.355248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.600 5.600 3 C -0.265 4.265 4 H 0.054 0.946 5 C -0.038 4.038 6 N -0.925 5.925 7 Si 0.955 3.045 8 H -0.287 1.287 9 H -0.281 1.281 10 H -0.283 1.283 11 C 0.378 3.622 12 N -0.625 5.625 13 C 0.076 3.924 14 C 0.064 3.936 15 C 0.060 3.940 16 N -0.519 5.519 17 C 0.054 3.946 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.140 4.140 21 C 0.049 3.951 22 O -0.342 6.342 23 C 0.632 3.368 24 O -0.583 6.583 25 H 0.016 0.984 26 H 0.041 0.959 27 H 0.017 0.983 28 H 0.252 0.748 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -18.539 13.350 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.071 0.929 5 C -0.233 4.233 6 N -0.571 5.571 7 Si 0.784 3.216 8 H -0.213 1.213 9 H -0.207 1.207 10 H -0.210 1.210 11 C 0.171 3.829 12 N -0.378 5.378 13 C -0.047 4.047 14 C 0.025 3.975 15 C -0.069 4.069 16 N -0.239 5.239 17 C -0.074 4.074 18 C -0.184 4.184 19 C -0.113 4.113 20 C -0.179 4.179 21 C -0.079 4.079 22 O -0.252 6.252 23 C 0.386 3.614 24 O -0.472 6.472 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.758 -18.553 13.306 23.138 hybrid contribution 0.424 2.769 -0.173 2.806 sum -3.334 -15.784 13.133 20.802 Atomic orbital electron populations 1.20698 0.81393 0.96540 0.98449 1.44839 1.03156 1.01977 1.82344 1.19404 0.94716 0.86139 1.39270 0.92851 1.25465 0.97962 1.00697 0.99221 1.70218 1.17213 1.26836 1.42835 0.85400 0.77612 0.80915 0.77698 1.21254 1.20719 1.20962 1.20857 0.96503 0.86949 0.78596 1.50488 1.19369 1.51493 1.16441 1.23237 0.94763 0.97655 0.89090 1.23890 0.82223 0.94832 0.96534 1.22653 1.01756 0.88682 0.93771 1.62774 1.06259 1.52135 1.02751 1.22254 1.00649 0.89227 0.95313 1.22192 0.99952 0.99605 0.96628 1.21416 0.96196 0.99520 0.94162 1.22697 0.94572 0.96772 1.03907 1.22774 0.86392 0.94144 1.04549 1.87211 1.43289 1.64397 1.30296 1.19059 0.83724 0.78662 0.80003 1.90944 1.40823 1.42457 1.72926 0.96545 0.94017 0.96395 0.93821 0.86777 0.92225 0.89429 0.85684 0.86206 0.89857 0.91072 0.88147 0.93525 0.89811 0.92651 0.89641 0.90072 0.88525 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.99 8.97 127.77 1.15 9.13 16 2 N -0.60 -29.82 3.17 -738.76 -2.34 -32.16 16 3 C -0.27 -15.47 9.71 84.03 0.82 -14.65 16 4 H 0.05 3.38 7.67 -2.91 -0.02 3.36 16 5 C -0.04 -2.17 5.08 84.86 0.43 -1.74 16 6 N -0.92 -54.02 10.48 21.65 0.23 -53.79 16 7 Si 0.96 48.04 29.58 68.60 2.03 50.06 16 8 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 9 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 C 0.38 15.11 6.53 170.96 1.12 16.22 16 12 N -0.63 -22.90 3.21 -963.45 -3.09 -25.99 16 13 C 0.08 1.87 6.41 86.41 0.55 2.43 16 14 C 0.06 1.60 0.80 -10.79 -0.01 1.59 16 15 C 0.06 1.11 5.66 86.13 0.49 1.59 16 16 N -0.52 -8.03 5.24 -891.56 -4.67 -12.70 16 17 C 0.05 0.88 6.07 86.34 0.52 1.40 16 18 C -0.14 -2.96 5.65 30.82 0.17 -2.79 16 19 C -0.09 -2.11 2.56 -10.46 -0.03 -2.14 16 20 C -0.14 -2.05 5.68 31.50 0.18 -1.87 16 21 C 0.05 0.56 6.12 87.02 0.53 1.09 16 22 O -0.34 -12.54 9.93 -49.22 -0.49 -13.03 16 23 C 0.63 27.55 8.85 129.90 1.15 28.70 16 24 O -0.58 -31.47 17.35 19.63 0.34 -31.13 16 25 H 0.02 0.81 7.51 -2.39 -0.02 0.79 16 26 H 0.04 1.50 8.01 -2.39 -0.02 1.49 16 27 H 0.02 0.91 6.95 -2.39 -0.02 0.89 16 28 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 29 H 0.11 3.54 8.07 -2.39 -0.02 3.52 16 30 H 0.06 2.65 7.82 -2.38 -0.02 2.63 16 31 H 0.09 2.17 6.55 -2.39 -0.02 2.15 16 32 H 0.13 2.08 7.10 -2.39 -0.02 2.06 16 33 H 0.12 1.61 7.05 -2.39 -0.02 1.59 16 34 H 0.08 1.76 7.95 -2.39 -0.02 1.74 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.21 7.83 -2.39 -0.02 1.19 16 38 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.13 6.66 -2.39 -0.02 1.12 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -76.00 332.86 0.07 -75.93 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.00 Total: 3.84 kcal Atomic # 6 Polarization: 31.89 SS G_CDS: 7.07 Total: 38.97 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -9.88 Total: -124.65 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.15 Total: -44.16 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -76.00 0.07 -75.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496463515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.111 kcal (2) G-P(sol) polarization free energy of solvation -76.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds