Wall clock time and date at job start Tue Mar 31 2020 04:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34959 * 125.52730 * 2 1 4 4 C 1.41209 * 108.24268 * 180.02562 * 3 2 1 5 5 N 1.32934 * 126.37429 * 180.02562 * 4 3 2 6 6 C 1.33828 * 120.00343 * 0.02562 * 5 4 3 7 7 O 1.21843 * 120.00043 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00132 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99980 * 359.97438 * 8 6 5 10 10 C 1.46503 * 120.00243 * 179.97438 * 8 6 5 11 11 C 1.53007 * 109.46928 * 89.99502 * 10 8 6 12 12 C 1.52999 * 109.46880 * 180.02562 * 11 10 8 13 13 N 1.46897 * 109.47120 * 179.97438 * 12 11 10 14 14 N 1.37420 * 107.24087 * 0.25721 * 4 3 2 15 15 H 0.96996 * 126.36150 * 179.69839 * 14 4 3 16 16 N 1.36446 * 125.52438 * 180.02562 * 2 1 3 17 17 C 1.46501 * 125.85399 * 0.02562 * 16 2 1 18 18 C 1.50702 * 109.46963 * 84.99959 * 17 16 2 19 19 H 1.07996 * 120.00135 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99738 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00315 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99563 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47112 * 60.00653 * 22 20 18 24 24 H 1.48500 * 109.46746 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47187 * 300.00482 * 22 20 18 26 26 H 1.09005 * 109.46868 * 89.97664 * 1 2 3 27 27 H 1.08990 * 109.47373 * 209.97707 * 1 2 3 28 28 H 1.09002 * 109.46971 * 329.98336 * 1 2 3 29 29 H 1.08006 * 125.87752 * 359.97438 * 3 2 1 30 30 H 1.09006 * 109.47159 * 90.00276 * 9 8 6 31 31 H 1.09000 * 109.47379 * 210.00597 * 9 8 6 32 32 H 1.09002 * 109.47405 * 330.00730 * 9 8 6 33 33 H 1.08995 * 109.47197 * 209.99333 * 10 8 6 34 34 H 1.09005 * 109.46816 * 329.99978 * 10 8 6 35 35 H 1.09004 * 109.46788 * 299.99902 * 11 10 8 36 36 H 1.08999 * 109.46993 * 60.00114 * 11 10 8 37 37 H 1.09000 * 109.47086 * 300.00267 * 12 11 10 38 38 H 1.09010 * 109.46809 * 59.99976 * 12 11 10 39 39 H 1.00906 * 110.99777 * 179.97438 * 13 12 11 40 40 H 1.00894 * 111.00235 * 303.96064 * 13 12 11 41 41 H 1.09000 * 109.47482 * 205.00093 * 17 16 2 42 42 H 1.09005 * 109.47302 * 325.00354 * 17 16 2 43 43 H 0.97001 * 120.00146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0984 0.0000 4 6 3.6396 0.6788 -0.0006 5 7 4.7104 1.4665 -0.0003 6 6 4.5627 2.7966 0.0012 7 8 3.4467 3.2857 0.0018 8 7 5.6483 3.5953 0.0009 9 6 6.9901 3.0073 -0.0003 10 6 5.4866 5.0514 0.0020 11 6 5.4312 5.5573 1.4449 12 6 5.2617 7.0778 1.4460 13 7 5.2078 7.5636 2.8313 14 7 3.6385 -0.6954 -0.0068 15 1 4.4192 -1.2710 -0.0128 16 7 2.2999 -1.1105 -0.0005 17 6 1.8321 -2.4988 -0.0016 18 6 1.5548 -2.9343 -1.4175 19 1 1.7118 -2.2459 -2.2347 20 6 1.1017 -4.2119 -1.6696 21 7 0.9110 -5.0503 -0.6745 22 14 0.7588 -4.7518 -3.4247 23 1 2.0042 -4.6481 -4.2268 24 1 0.2845 -6.1590 -3.4258 25 1 -0.2854 -3.8774 -4.0165 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5134 28 1 -0.3633 0.8899 0.5141 29 1 1.9469 2.1220 -0.0004 30 1 7.3223 2.8622 -1.0284 31 1 7.6805 3.6763 0.5135 32 1 6.9661 2.0459 0.5128 33 1 6.3307 5.5110 -0.5120 34 1 4.5616 5.3145 -0.5111 35 1 4.5870 5.0975 1.9589 36 1 6.3561 5.2940 1.9580 37 1 6.1055 7.5379 0.9318 38 1 4.3364 7.3406 0.9329 39 1 5.0965 8.5661 2.8589 40 1 4.4731 7.1034 3.3475 41 1 2.5984 -3.1409 0.4325 42 1 0.9180 -2.5748 0.5874 43 1 0.5919 -5.9489 -0.8519 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583576040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:48 Heat of formation + Delta-G solvation = 66.009164 kcal Electronic energy + Delta-G solvation = -23513.468257 eV Core-core repulsion = 20017.304119 eV Total energy + Delta-G solvation = -3496.164138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.83057 -39.07831 -36.31758 -34.71642 -34.13222 -33.11893 -32.20904 -30.98623 -30.04625 -27.48468 -26.78605 -26.30817 -24.54739 -22.98711 -21.72814 -20.98753 -19.61000 -18.87296 -17.15625 -16.83280 -16.29790 -15.98240 -15.94786 -15.22972 -14.95645 -14.75586 -14.47027 -14.41254 -13.98738 -13.41958 -12.91982 -12.82929 -12.74970 -12.58054 -12.37603 -12.30241 -12.09485 -11.94808 -11.78304 -11.72313 -11.36550 -11.31812 -11.02819 -10.69319 -10.51838 -10.34609 -9.61233 -9.43100 -8.90548 -8.90391 -8.81072 -8.28377 -8.15535 -6.83847 -6.45971 -4.63561 1.80861 2.10871 3.07689 3.13317 3.14533 3.18066 3.49529 4.07051 4.36945 4.46859 4.70303 4.82765 4.93766 5.07771 5.12403 5.30652 5.40042 5.53975 5.58181 5.66215 5.70738 5.80101 5.88554 5.92803 5.96534 6.13874 6.17117 6.20779 6.32727 6.38649 6.56123 6.64512 6.79960 6.90857 7.18861 7.22034 7.34183 7.41315 7.53881 7.70467 7.88790 8.27835 8.45403 8.52596 9.06645 9.65279 10.54294 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030351 B = 0.002848 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.307737 B = 9827.554224 C =10188.725458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.188 3.812 3 C -0.334 4.334 4 C 0.488 3.512 5 N -0.710 5.710 6 C 0.686 3.314 7 O -0.631 6.631 8 N -0.618 5.618 9 C 0.104 3.896 10 C 0.136 3.864 11 C -0.133 4.133 12 C 0.064 3.936 13 N -0.854 5.854 14 N -0.472 5.472 15 H 0.444 0.556 16 N -0.345 5.345 17 C 0.256 3.744 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.887 5.887 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.182 0.818 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.339 0.661 40 H 0.341 0.659 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 13.967 3.341 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 C -0.367 4.367 4 C 0.235 3.765 5 N -0.475 5.475 6 C 0.387 3.613 7 O -0.514 6.514 8 N -0.354 5.354 9 C -0.040 4.040 10 C 0.011 3.989 11 C -0.172 4.172 12 C -0.067 4.067 13 N -0.383 5.383 14 N -0.194 5.194 15 H 0.291 0.709 16 N -0.132 5.132 17 C 0.139 3.861 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.199 0.801 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.638 13.095 3.446 14.668 hybrid contribution -1.127 -0.227 -1.204 1.665 sum 4.512 12.868 2.242 13.819 Atomic orbital electron populations 1.20579 0.86535 1.03753 1.04187 1.21274 0.94381 0.85629 0.92534 1.22171 0.91163 1.00164 1.23191 1.18711 0.91111 0.82029 0.84665 1.68068 1.28416 1.03912 1.47099 1.16570 0.82635 0.84990 0.77112 1.90711 1.24122 1.78570 1.57958 1.46552 1.05706 1.04695 1.78397 1.21433 0.82743 0.99241 1.00605 1.21105 1.02197 0.79774 0.95776 1.21961 1.02901 0.94148 0.98188 1.21718 1.00023 0.95675 0.89320 1.58716 1.55198 1.10155 1.14208 1.44372 0.98837 1.04930 1.71310 0.70935 1.47833 0.92605 1.08034 1.64731 1.19981 0.96378 0.70326 0.99377 1.21352 1.47573 0.98681 0.91713 0.91383 1.24941 0.94313 0.95807 0.98390 1.69885 1.44063 1.06940 1.31499 0.86369 0.79122 0.77804 0.83218 1.19882 1.20817 1.19684 0.89255 0.90177 0.89669 0.80129 0.94151 0.93020 0.90264 0.91441 0.90351 0.91628 0.91449 0.91185 0.95350 0.84937 0.84630 0.93214 0.91569 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 10.09 36.01 0.36 -0.97 16 2 C 0.19 3.43 6.92 -81.70 -0.57 2.86 16 3 C -0.33 -6.62 9.41 -39.62 -0.37 -7.00 16 4 C 0.49 9.89 8.07 -155.29 -1.25 8.64 16 5 N -0.71 -14.50 9.22 -15.79 -0.15 -14.65 16 6 C 0.69 13.98 8.19 -87.77 -0.72 13.26 16 7 O -0.63 -14.04 12.84 5.06 0.06 -13.98 16 8 N -0.62 -10.12 2.87 -187.58 -0.54 -10.66 16 9 C 0.10 1.39 10.41 59.85 0.62 2.02 16 10 C 0.14 1.82 5.41 -4.04 -0.02 1.80 16 11 C -0.13 -1.63 5.80 -26.73 -0.15 -1.78 16 12 C 0.06 0.63 6.79 -3.83 -0.03 0.61 16 13 N -0.85 -7.86 9.62 -10.37 -0.10 -7.96 16 14 N -0.47 -8.82 7.38 31.33 0.23 -8.59 16 15 H 0.44 7.28 8.96 -182.56 -1.64 5.64 16 16 N -0.35 -6.72 3.63 -58.04 -0.21 -6.93 16 17 C 0.26 5.45 5.93 -5.19 -0.03 5.42 16 18 C -0.56 -13.28 9.39 -34.44 -0.32 -13.61 16 19 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -22.54 13.29 55.43 0.74 -21.81 16 22 Si 0.91 19.32 29.54 -169.99 -5.02 14.30 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.14 7.14 -51.93 -0.37 0.77 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.18 3.76 5.77 -52.48 -0.30 3.45 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.08 1.16 7.31 -51.93 -0.38 0.78 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.31 16 34 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 39 H 0.34 2.41 9.08 -39.29 -0.36 2.05 16 40 H 0.34 3.03 8.99 -39.29 -0.35 2.68 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.42 7.18 -51.93 -0.37 1.04 16 43 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -29.88 360.83 -10.05 -39.93 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.92 Total: 12.03 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -2.58 Total: 12.87 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -0.03 Total: -70.59 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.06 Total: -13.98 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.88 -10.05 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583576040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.938 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds