Wall clock time and date at job start Tue Mar 31 2020 04:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46907 * 110.99981 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47348 * 294.99852 * 4 3 2 6 6 C 1.53007 * 109.46683 * 174.99749 * 4 3 2 7 7 N 1.46495 * 109.47022 * 55.00281 * 4 3 2 8 8 C 1.34783 * 119.99691 * 204.99229 * 7 4 3 9 9 O 1.21829 * 120.00126 * 0.02562 * 8 7 4 10 10 N 1.33834 * 119.99910 * 179.97438 * 8 7 4 11 11 C 1.32930 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.41211 * 126.37877 * 0.15025 * 11 10 8 13 13 C 1.34956 * 108.24512 * 180.29420 * 12 11 10 14 14 C 1.50690 * 125.52501 * 179.70448 * 13 12 11 15 15 N 1.36448 * 108.94479 * 359.74418 * 13 12 11 16 16 C 1.46502 * 125.85021 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47070 * 85.02402 * 16 15 13 18 18 H 1.08002 * 120.00517 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00108 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00349 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47283 * 89.99874 * 21 19 17 23 23 H 1.48494 * 109.47482 * 210.00194 * 21 19 17 24 24 H 1.48506 * 109.46784 * 330.00351 * 21 19 17 25 25 N 1.37419 * 126.37896 * 179.97438 * 11 10 8 26 26 H 0.97001 * 126.36884 * 359.97438 * 25 11 10 27 27 H 1.09003 * 109.47336 * 60.00270 * 1 2 3 28 28 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47366 * 299.99691 * 1 2 3 30 30 H 1.00905 * 111.00251 * 123.95086 * 2 1 3 31 31 H 1.09005 * 109.46672 * 59.99802 * 3 2 1 32 32 H 1.08999 * 109.46771 * 299.99885 * 3 2 1 33 33 H 1.08993 * 109.47313 * 300.00125 * 6 4 3 34 34 H 1.09007 * 109.46767 * 60.00328 * 6 4 3 35 35 H 1.09001 * 109.46816 * 180.02562 * 6 4 3 36 36 H 0.96999 * 120.00287 * 25.00021 * 7 4 3 37 37 H 1.08005 * 125.87691 * 0.02562 * 12 11 10 38 38 H 1.09002 * 109.47738 * 270.03967 * 14 13 12 39 39 H 1.09003 * 109.47417 * 30.04305 * 14 13 12 40 40 H 1.09010 * 109.47037 * 150.04266 * 14 13 12 41 41 H 1.09000 * 109.47482 * 205.01940 * 16 15 13 42 42 H 1.09000 * 109.47236 * 325.02668 * 16 15 13 43 43 H 0.96999 * 120.00194 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3306 0.0006 5 1 3.8761 0.8870 0.9322 6 6 4.0730 2.7536 -0.1251 7 7 3.9923 0.5255 -1.1305 8 6 5.1988 -0.0730 -1.0786 9 8 5.9004 0.0551 -0.0909 10 7 5.6256 -0.8090 -2.1117 11 6 6.8154 -1.3997 -2.0604 12 6 7.7325 -1.3442 -0.9880 13 6 8.8212 -2.0668 -1.3254 14 6 10.0427 -2.2633 -0.4651 15 7 8.6368 -2.5900 -2.5720 16 6 9.5890 -3.4345 -3.2976 17 6 9.4057 -4.8710 -2.8803 18 1 8.6554 -5.1291 -2.1476 19 6 10.1967 -5.8557 -3.4331 20 7 10.0371 -7.1093 -3.0686 21 14 11.4951 -5.4095 -4.6999 22 1 12.7770 -5.1128 -4.0114 23 1 11.6868 -6.5476 -5.6342 24 1 11.0535 -4.2131 -5.4609 25 7 7.3804 -2.1810 -3.0395 26 1 6.9850 -2.4042 -3.8967 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8306 -0.5261 0.7814 31 1 1.6458 1.8948 0.8900 32 1 1.6459 1.8948 -0.8900 33 1 3.7218 3.1972 -1.0567 34 1 3.7251 3.3526 0.7165 35 1 5.1626 2.7245 -0.1251 36 1 3.4336 0.4233 -1.9168 37 1 7.5893 -0.8112 -0.0596 38 1 10.7642 -1.4729 -0.6724 39 1 9.7565 -2.2274 0.5860 40 1 10.4913 -3.2318 -0.6867 41 1 9.4132 -3.3423 -4.3693 42 1 10.6058 -3.1162 -3.0674 43 1 10.5934 -7.8021 -3.4578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595231646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:06 Heat of formation + Delta-G solvation = 70.992221 kcal Electronic energy + Delta-G solvation = -23514.089620 eV Core-core repulsion = 20018.141563 eV Total energy + Delta-G solvation = -3495.948056 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83226 -39.02151 -36.93609 -34.55289 -33.83722 -32.99932 -32.17066 -31.19636 -30.11456 -27.47501 -27.05272 -26.93743 -23.61777 -22.93054 -22.03801 -20.66108 -19.74256 -19.46815 -17.40389 -17.30404 -16.46609 -16.17736 -15.26419 -15.08944 -14.86475 -14.75262 -14.26437 -14.14067 -14.01902 -13.63400 -12.98556 -12.89233 -12.85852 -12.72903 -12.54271 -12.31179 -12.28985 -12.22800 -11.93454 -11.84742 -11.48436 -11.39310 -11.00439 -10.78975 -10.62241 -10.00156 -9.58722 -9.44964 -9.01420 -8.81103 -8.60158 -8.43032 -8.24085 -6.74257 -6.48203 -4.56061 1.80593 2.07187 2.98235 3.03413 3.09294 3.19326 3.70282 4.00312 4.08785 4.45394 4.73767 4.80228 4.81438 5.05523 5.08677 5.22652 5.29994 5.40450 5.47717 5.59021 5.60686 5.69030 5.69907 5.77764 5.85609 5.98204 6.07045 6.17245 6.23318 6.28316 6.36021 6.51028 6.77982 6.81045 6.98494 7.15795 7.26669 7.47430 7.68447 7.84459 8.08323 8.44055 8.56821 8.59765 9.04659 9.75621 10.63310 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026911 B = 0.002927 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.226536 B = 9565.340853 C =10027.864945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.689 5.689 3 C 0.051 3.949 4 C 0.162 3.838 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.711 5.711 8 C 0.687 3.313 9 O -0.636 6.636 10 N -0.710 5.710 11 C 0.491 3.509 12 C -0.330 4.330 13 C 0.189 3.811 14 C -0.100 4.100 15 N -0.347 5.347 16 C 0.230 3.770 17 C -0.561 4.561 18 H 0.085 0.915 19 C 0.083 3.917 20 N -0.877 5.877 21 Si 0.872 3.128 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.265 1.265 25 N -0.473 5.473 26 H 0.444 0.556 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.345 0.655 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.183 0.817 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 14.324 3.540 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.320 5.320 3 C -0.079 4.079 4 C 0.055 3.945 5 H 0.099 0.901 6 C -0.220 4.220 7 N -0.364 5.364 8 C 0.386 3.614 9 O -0.519 6.519 10 N -0.474 5.474 11 C 0.238 3.762 12 C -0.362 4.362 13 C 0.065 3.935 14 C -0.158 4.158 15 N -0.134 5.134 16 C 0.112 3.888 17 C -0.599 4.599 18 H 0.103 0.897 19 C -0.123 4.123 20 N -0.513 5.513 21 Si 0.698 3.302 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.190 1.190 25 N -0.196 5.196 26 H 0.291 0.709 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.162 0.838 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.200 0.800 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.348 13.906 2.636 16.433 hybrid contribution 0.253 0.091 -0.112 0.291 sum -8.095 13.997 2.525 16.365 Atomic orbital electron populations 1.22186 0.87966 1.01887 1.00058 1.60291 1.07295 1.13785 1.50602 1.22332 0.94548 0.90026 1.01022 1.20636 0.91446 0.91187 0.91271 0.90133 1.22171 1.02532 0.96069 1.01246 1.44524 1.18468 1.53569 1.19889 1.16603 0.81772 0.79276 0.83747 1.90706 1.56212 1.68001 1.37005 1.68056 1.15479 1.29919 1.33900 1.18686 0.89051 0.84088 0.84421 1.22215 0.95023 1.14371 1.04613 1.21248 0.97466 0.91085 0.83741 1.20654 0.92818 1.04172 0.98192 1.47238 1.06159 1.45380 1.14619 1.20246 0.85819 0.90136 0.92649 1.21258 1.22677 0.88293 1.27631 0.89668 1.24823 0.96741 0.94661 0.96045 1.69863 1.39108 1.00117 1.42180 0.86920 0.82428 0.78994 0.81855 1.19345 1.20326 1.18956 1.44294 1.08985 1.47836 1.18452 0.70914 0.91821 0.91439 0.96355 0.83753 0.94217 0.90628 0.92754 0.92405 0.91607 0.76703 0.79959 0.90024 0.89239 0.89038 0.93520 0.92487 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.06 0.64 0.88 16 2 N -0.69 -7.31 6.58 -121.13 -0.80 -8.11 16 3 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 4 C 0.16 2.05 2.81 -67.93 -0.19 1.86 16 5 H 0.08 1.17 7.57 -51.93 -0.39 0.78 16 6 C -0.16 -1.85 9.48 37.16 0.35 -1.49 16 7 N -0.71 -11.15 4.81 -58.87 -0.28 -11.43 16 8 C 0.69 13.72 8.44 -87.75 -0.74 12.98 16 9 O -0.64 -13.94 12.92 5.07 0.07 -13.88 16 10 N -0.71 -14.55 10.59 -15.79 -0.17 -14.72 16 11 C 0.49 9.99 8.07 -155.29 -1.25 8.73 16 12 C -0.33 -6.52 9.41 -39.62 -0.37 -6.89 16 13 C 0.19 3.44 6.92 -81.71 -0.57 2.87 16 14 C -0.10 -1.43 9.92 36.00 0.36 -1.07 16 15 N -0.35 -6.66 3.63 -58.04 -0.21 -6.87 16 16 C 0.23 4.59 4.78 -5.19 -0.02 4.56 16 17 C -0.56 -13.79 9.94 -34.44 -0.34 -14.13 16 18 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 19 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.88 -24.13 13.96 55.43 0.77 -23.36 16 21 Si 0.87 18.10 27.47 -169.99 -4.67 13.43 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.26 -5.15 6.54 56.52 0.37 -4.78 16 25 N -0.47 -8.81 7.38 31.33 0.23 -8.58 16 26 H 0.44 7.24 8.96 -182.55 -1.64 5.60 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.34 3.73 8.82 -39.29 -0.35 3.38 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 5.95 8.70 -40.82 -0.36 5.59 16 37 H 0.18 3.77 5.77 -52.48 -0.30 3.47 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.41 7.80 -51.92 -0.40 1.00 16 41 H 0.05 0.90 7.20 -51.93 -0.37 0.53 16 42 H 0.06 1.05 7.30 -51.93 -0.38 0.67 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -30.94 359.20 -9.91 -40.84 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -8.01 Total: 16.48 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -2.26 Total: 10.79 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -0.45 Total: -73.07 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.88 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -4.67 Total: 13.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.94 -9.91 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595231646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.837 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds