Wall clock time and date at job start Tue Mar 31 2020 04:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46907 * 110.99981 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47348 * 294.99852 * 4 3 2 6 6 C 1.53007 * 109.46683 * 174.99749 * 4 3 2 7 7 N 1.46495 * 109.47022 * 55.00281 * 4 3 2 8 8 C 1.34783 * 119.99691 * 204.99229 * 7 4 3 9 9 O 1.21829 * 120.00126 * 0.02562 * 8 7 4 10 10 N 1.33834 * 119.99910 * 179.97438 * 8 7 4 11 11 C 1.32930 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.41211 * 126.37877 * 0.15025 * 11 10 8 13 13 C 1.34956 * 108.24512 * 180.29420 * 12 11 10 14 14 C 1.50690 * 125.52501 * 179.70448 * 13 12 11 15 15 N 1.36448 * 108.94479 * 359.74418 * 13 12 11 16 16 C 1.46502 * 125.85021 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47070 * 85.02402 * 16 15 13 18 18 H 1.08002 * 120.00517 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00108 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00349 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47283 * 89.99874 * 21 19 17 23 23 H 1.48494 * 109.47482 * 210.00194 * 21 19 17 24 24 H 1.48506 * 109.46784 * 330.00351 * 21 19 17 25 25 N 1.37419 * 126.37896 * 179.97438 * 11 10 8 26 26 H 0.97001 * 126.36884 * 359.97438 * 25 11 10 27 27 H 1.09003 * 109.47336 * 60.00270 * 1 2 3 28 28 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47366 * 299.99691 * 1 2 3 30 30 H 1.00905 * 111.00251 * 123.95086 * 2 1 3 31 31 H 1.09005 * 109.46672 * 59.99802 * 3 2 1 32 32 H 1.08999 * 109.46771 * 299.99885 * 3 2 1 33 33 H 1.08993 * 109.47313 * 300.00125 * 6 4 3 34 34 H 1.09007 * 109.46767 * 60.00328 * 6 4 3 35 35 H 1.09001 * 109.46816 * 180.02562 * 6 4 3 36 36 H 0.96999 * 120.00287 * 25.00021 * 7 4 3 37 37 H 1.08005 * 125.87691 * 0.02562 * 12 11 10 38 38 H 1.09002 * 109.47738 * 270.03967 * 14 13 12 39 39 H 1.09003 * 109.47417 * 30.04305 * 14 13 12 40 40 H 1.09010 * 109.47037 * 150.04266 * 14 13 12 41 41 H 1.09000 * 109.47482 * 205.01940 * 16 15 13 42 42 H 1.09000 * 109.47236 * 325.02668 * 16 15 13 43 43 H 0.96999 * 120.00194 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3306 0.0006 5 1 3.8761 0.8870 0.9322 6 6 4.0730 2.7536 -0.1251 7 7 3.9923 0.5255 -1.1305 8 6 5.1988 -0.0730 -1.0786 9 8 5.9004 0.0551 -0.0909 10 7 5.6256 -0.8090 -2.1117 11 6 6.8154 -1.3997 -2.0604 12 6 7.7325 -1.3442 -0.9880 13 6 8.8212 -2.0668 -1.3254 14 6 10.0427 -2.2633 -0.4651 15 7 8.6368 -2.5900 -2.5720 16 6 9.5890 -3.4345 -3.2976 17 6 9.4057 -4.8710 -2.8803 18 1 8.6554 -5.1291 -2.1476 19 6 10.1967 -5.8557 -3.4331 20 7 10.0371 -7.1093 -3.0686 21 14 11.4951 -5.4095 -4.6999 22 1 12.7770 -5.1128 -4.0114 23 1 11.6868 -6.5476 -5.6342 24 1 11.0535 -4.2131 -5.4609 25 7 7.3804 -2.1810 -3.0395 26 1 6.9850 -2.4042 -3.8967 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8306 -0.5261 0.7814 31 1 1.6458 1.8948 0.8900 32 1 1.6459 1.8948 -0.8900 33 1 3.7218 3.1972 -1.0567 34 1 3.7251 3.3526 0.7165 35 1 5.1626 2.7245 -0.1251 36 1 3.4336 0.4233 -1.9168 37 1 7.5893 -0.8112 -0.0596 38 1 10.7642 -1.4729 -0.6724 39 1 9.7565 -2.2274 0.5860 40 1 10.4913 -3.2318 -0.6867 41 1 9.4132 -3.3423 -4.3693 42 1 10.6058 -3.1162 -3.0674 43 1 10.5934 -7.8021 -3.4578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595231646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:04 Heat of formation + Delta-G solvation = 46.638524 kcal Electronic energy + Delta-G solvation = -23515.145675 eV Core-core repulsion = 20018.141563 eV Total energy + Delta-G solvation = -3497.004112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.34134 -40.41588 -37.99642 -36.01158 -35.10816 -34.66389 -33.65034 -32.75570 -31.40196 -28.80518 -28.63238 -27.82365 -24.76779 -24.25398 -23.46700 -21.84547 -21.17836 -20.90723 -19.26116 -18.80462 -17.73646 -17.49890 -16.66649 -16.42818 -16.29538 -15.94909 -15.56247 -15.37392 -15.16396 -14.85246 -14.65328 -14.27214 -14.23758 -13.81261 -13.78876 -13.73781 -13.44603 -13.18402 -13.00150 -12.96719 -12.75945 -12.58883 -12.37341 -12.19945 -11.83690 -11.75387 -11.13312 -11.08873 -10.90064 -10.28209 -9.85372 -9.75028 -9.35753 -8.41288 -8.28310 -6.54570 0.29111 0.59379 1.39136 1.40698 1.49242 1.66847 2.26541 2.40929 2.90455 3.04106 3.21894 3.32633 3.70951 3.89182 4.19359 4.23500 4.31407 4.42281 4.50076 4.51767 4.56848 4.63383 4.70737 4.77276 4.78388 4.83681 4.88160 4.96922 5.05925 5.08597 5.15559 5.17775 5.30631 5.35364 5.84677 5.99546 6.05409 6.12241 6.16922 6.37723 6.47558 6.57168 6.97405 7.11703 7.14650 8.24042 8.75293 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026911 B = 0.002927 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.226536 B = 9565.340853 C =10027.864945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.709 5.709 3 C 0.061 3.939 4 C 0.158 3.842 5 H 0.058 0.942 6 C -0.153 4.153 7 N -0.699 5.699 8 C 0.673 3.327 9 O -0.663 6.663 10 N -0.721 5.721 11 C 0.475 3.525 12 C -0.347 4.347 13 C 0.197 3.803 14 C -0.098 4.098 15 N -0.352 5.352 16 C 0.235 3.765 17 C -0.561 4.561 18 H 0.031 0.969 19 C 0.025 3.975 20 N -0.935 5.935 21 Si 0.947 3.053 22 H -0.253 1.253 23 H -0.287 1.287 24 H -0.235 1.235 25 N -0.469 5.469 26 H 0.452 0.548 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.340 0.660 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.403 0.597 37 H 0.172 0.828 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 16.356 2.588 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.340 5.340 3 C -0.068 4.068 4 C 0.052 3.948 5 H 0.076 0.924 6 C -0.212 4.212 7 N -0.351 5.351 8 C 0.372 3.628 9 O -0.548 6.548 10 N -0.485 5.485 11 C 0.221 3.779 12 C -0.380 4.380 13 C 0.072 3.928 14 C -0.156 4.156 15 N -0.140 5.140 16 C 0.117 3.883 17 C -0.599 4.599 18 H 0.049 0.951 19 C -0.175 4.175 20 N -0.573 5.573 21 Si 0.768 3.232 22 H -0.177 1.177 23 H -0.213 1.213 24 H -0.158 1.158 25 N -0.194 5.194 26 H 0.301 0.699 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.238 0.762 37 H 0.189 0.811 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.859 15.984 1.680 17.891 hybrid contribution -0.023 -0.567 0.278 0.632 sum -7.882 15.417 1.958 17.426 Atomic orbital electron populations 1.22201 0.86521 1.02252 1.00876 1.60315 1.08770 1.14214 1.50678 1.22247 0.91945 0.90096 1.02531 1.20844 0.93633 0.91170 0.89148 0.92381 1.22087 1.00419 0.95587 1.03134 1.44545 1.17010 1.52799 1.20775 1.16932 0.82844 0.79619 0.83408 1.90680 1.57280 1.69032 1.37802 1.68119 1.15730 1.30383 1.34276 1.18916 0.89344 0.84540 0.85088 1.22105 0.95867 1.15589 1.04409 1.21810 0.98127 0.89503 0.83348 1.20833 0.91776 1.04716 0.98282 1.47282 1.06232 1.45359 1.15093 1.20190 0.87309 0.87340 0.93488 1.21358 1.21113 0.91204 1.26270 0.95069 1.25802 0.99281 0.94110 0.98343 1.70037 1.41036 1.01784 1.44431 0.85743 0.79388 0.79344 0.78714 1.17748 1.21276 1.15835 1.44298 1.08940 1.47557 1.18578 0.69929 0.91274 0.91404 0.95115 0.84287 0.92096 0.89470 0.91487 0.89705 0.94690 0.76185 0.81078 0.86577 0.87739 0.90016 0.91712 0.89395 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.70 127.69 1.37 1.83 16 2 N -0.71 -14.28 6.58 -537.14 -3.53 -17.82 16 3 C 0.06 1.10 5.24 86.30 0.45 1.55 16 4 C 0.16 3.93 2.81 45.00 0.13 4.06 16 5 H 0.06 1.72 7.57 -2.39 -0.02 1.70 16 6 C -0.15 -3.35 9.48 71.98 0.68 -2.67 16 7 N -0.70 -21.95 4.81 -458.34 -2.20 -24.16 16 8 C 0.67 27.47 8.44 179.35 1.51 28.98 16 9 O -0.66 -29.96 12.92 -4.76 -0.06 -30.02 16 10 N -0.72 -30.05 10.59 -322.55 -3.42 -33.47 16 11 C 0.47 19.54 8.07 133.95 1.08 20.63 16 12 C -0.35 -13.88 9.41 22.25 0.21 -13.67 16 13 C 0.20 7.00 6.92 41.08 0.28 7.28 16 14 C -0.10 -2.62 9.92 71.23 0.71 -1.91 16 15 N -0.35 -13.19 3.63 -337.55 -1.23 -14.42 16 16 C 0.24 8.89 4.78 85.63 0.41 9.30 16 17 C -0.56 -27.72 9.94 25.60 0.25 -27.47 16 18 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 19 C 0.03 1.27 5.47 84.65 0.46 1.73 16 20 N -0.94 -52.74 13.96 21.45 0.30 -52.45 16 21 Si 0.95 35.79 27.47 68.60 1.88 37.67 16 22 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 23 H -0.29 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.24 -7.73 6.54 99.48 0.65 -7.08 16 25 N -0.47 -17.39 7.38 -54.79 -0.40 -17.80 16 26 H 0.45 14.58 8.96 -213.28 -1.91 12.67 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.34 7.25 8.82 -89.69 -0.79 6.46 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.40 11.87 8.70 -92.71 -0.81 11.06 16 37 H 0.17 7.28 5.77 -2.91 -0.02 7.26 16 38 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.08 2.38 7.80 -2.38 -0.02 2.36 16 41 H 0.06 2.27 7.20 -2.39 -0.02 2.25 16 42 H 0.09 2.88 7.30 -2.39 -0.02 2.86 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -70.16 359.20 -3.63 -73.79 By element: Atomic # 1 Polarization: 51.54 SS G_CDS: -2.52 Total: 49.02 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 7.55 Total: 29.64 kcal Atomic # 7 Polarization: -149.62 SS G_CDS: -10.48 Total: -160.10 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 1.88 Total: 37.67 kcal Total: -70.16 -3.63 -73.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595231646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.432 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds