Wall clock time and date at job start Tue Mar 31 2020 03:07:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42902 * 109.46960 * 2 1
4 4 N 1.46299 * 113.99785 * 179.97438 * 3 2 1
5 5 C 1.46855 * 111.00331 * 244.21452 * 4 3 2
6 6 C 1.53036 * 109.52474 * 174.16479 * 5 4 3
7 7 C 1.53113 * 109.28021 * 59.17664 * 6 5 4
8 8 C 1.53003 * 109.51994 * 182.44281 * 7 6 5
9 9 C 1.50699 * 109.46899 * 294.68032 * 8 7 6
10 10 O 1.21293 * 120.00051 * 0.02562 * 9 8 7
11 11 N 1.34776 * 120.00055 * 180.02562 * 9 8 7
12 12 C 1.37096 * 120.00130 * 180.02562 * 11 9 8
13 13 H 1.07989 * 120.00275 * 17.71873 * 12 11 9
14 14 C 1.38953 * 119.99943 * 197.72197 * 12 11 9
15 15 N 1.31417 * 120.00022 * 21.41636 * 14 12 11
16 16 Si 1.86802 * 120.00023 * 201.41488 * 14 12 11
17 17 H 1.48495 * 109.47008 * 0.02562 * 16 14 12
18 18 H 1.48498 * 109.46987 * 120.00193 * 16 14 12
19 19 H 1.48493 * 109.47045 * 239.99872 * 16 14 12
20 20 C 1.46502 * 119.99888 * 0.02562 * 11 9 8
21 21 C 1.47206 * 109.47064 * 84.22871 * 20 11 9
22 22 N 9.44734 * 163.02307 * 33.91581 * 3 1 2
23 23 C 1.53119 * 109.16213 * 302.34759 * 7 6 5
24 24 C 1.46851 * 111.00206 * 120.00663 * 4 3 2
25 25 H 1.08998 * 109.46969 * 59.99937 * 1 2 3
26 26 H 1.08999 * 109.46787 * 179.97438 * 1 2 3
27 27 H 1.09002 * 109.46992 * 299.99856 * 1 2 3
28 28 H 1.09000 * 109.47506 * 120.00600 * 2 1 3
29 29 H 1.09005 * 109.46895 * 240.00659 * 2 1 3
30 30 H 1.08999 * 109.45603 * 294.18109 * 5 4 3
31 31 H 1.08998 * 109.46189 * 54.14387 * 5 4 3
32 32 H 1.09002 * 109.50003 * 299.23410 * 6 5 4
33 33 H 1.08997 * 109.53081 * 179.14338 * 6 5 4
34 34 H 1.09001 * 109.57408 * 62.28509 * 7 6 5
35 35 H 1.08992 * 109.47621 * 54.68176 * 8 7 6
36 36 H 1.08999 * 109.46779 * 174.68863 * 8 7 6
37 37 H 0.96996 * 120.00041 * 179.97438 * 15 14 12
38 38 H 1.08998 * 109.47470 * 204.22827 * 20 11 9
39 39 H 1.09000 * 109.47242 * 324.23024 * 20 11 9
40 40 H 1.09008 * 109.50194 * 297.71367 * 23 7 6
41 41 H 1.09001 * 109.53468 * 177.61566 * 23 7 6
42 42 H 1.09007 * 109.45638 * 305.85429 * 24 4 3
43 43 H 1.08996 * 109.46417 * 65.82935 * 24 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 7 3.4647 1.4628 0.0006
5 6 3.9418 2.0991 1.2352
6 6 5.4716 2.0717 1.2665
7 6 6.0157 2.8154 0.0437
8 6 7.5438 2.7392 0.0371
9 6 8.0892 3.4884 1.2255
10 8 7.3304 4.0297 2.0016
11 7 9.4202 3.5571 1.4259
12 6 9.9164 4.2382 2.5073
13 1 9.2710 4.4713 3.3411
14 6 11.2497 4.6287 2.5303
15 7 11.9220 4.7378 1.4064
16 14 12.0866 4.9987 4.1589
17 1 11.1194 4.8019 5.2683
18 1 13.2414 4.0831 4.3412
19 1 12.5645 6.4046 4.1616
20 6 10.3368 2.9038 0.4881
21 6 10.5888 3.7972 -0.6544
22 7 10.7837 4.4842 -1.5392
23 6 5.4653 2.1629 -1.2275
24 6 3.9358 2.1877 -1.1865
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8934 -0.5139 0.8899
29 1 1.8933 -0.5138 -0.8901
30 1 3.5963 3.1323 1.2681
31 1 3.5512 1.5580 2.0970
32 1 5.8175 1.0382 1.2475
33 1 5.8263 2.5575 2.1755
34 1 5.7032 3.8590 0.0821
35 1 7.8559 1.6963 0.0906
36 1 7.9259 3.1862 -0.8807
37 1 12.8526 5.0107 1.4225
38 1 11.2779 2.6850 0.9927
39 1 9.8912 1.9751 0.1318
40 1 5.8111 1.1308 -1.2857
41 1 5.8150 2.7137 -2.1007
42 1 3.5407 1.7108 -2.0836
43 1 3.5905 3.2205 -1.1421
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597034242.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:46
Heat of formation + Delta-G solvation = -8.400800 kcal
Electronic energy + Delta-G solvation = -24122.767960 eV
Core-core repulsion = 20591.084413 eV
Total energy + Delta-G solvation = -3531.683547 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-39.43117 -38.22134 -36.44573 -35.68381 -34.34921 -32.83607 -31.84969 -30.76636
-30.44258 -27.72229 -27.17878 -24.63385 -23.01399 -22.76490 -22.02391 -19.62357
-18.95841 -17.90848 -17.33890 -16.47276 -16.21159 -15.69090 -15.14183 -14.83392
-14.54309 -14.43240 -14.20014 -13.83817 -13.53403 -13.39714 -13.09722 -12.98454
-12.47877 -12.32450 -12.22491 -12.15997 -11.80071 -11.67050 -11.63409 -11.39952
-11.25273 -11.16869 -11.05339 -10.63658 -10.54132 -10.39821 -10.33860 -10.20637
-10.15514 -9.81789 -9.25779 -8.68672 -8.52558 -8.03889 -6.51765 -4.00656
2.51287 3.07601 3.21534 3.27434 3.54659 3.78631 3.96276 4.10709
4.65034 4.66423 4.87005 4.95451 4.97124 5.05801 5.09441 5.12275
5.22418 5.27801 5.39113 5.42266 5.46534 5.63215 5.70278 5.71763
5.77521 5.83206 5.85137 5.91628 5.99287 6.01647 6.04882 6.15302
6.23975 6.33477 6.49636 6.56263 6.67735 6.90449 7.07484 7.46152
7.90522 8.27541 8.72292 9.00239 9.19645 9.74218 10.54494
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.027670 B = 0.003297 C = 0.003024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.695827 B = 8490.563711 C = 9256.398570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.069 3.931
3 O -0.271 6.271
4 N -0.362 5.362
5 C 0.045 3.955
6 C -0.110 4.110
7 C -0.072 4.072
8 C -0.131 4.131
9 C 0.457 3.543
10 O -0.571 6.571
11 N -0.445 5.445
12 C -0.312 4.312
13 H 0.109 0.891
14 C 0.031 3.969
15 N -0.878 5.878
16 Si 0.925 3.075
17 H -0.267 1.267
18 H -0.279 1.279
19 H -0.283 1.283
20 C 0.222 3.778
21 C 0.246 3.754
22 N -0.474 5.474
23 C -0.110 4.110
24 C 0.045 3.955
25 H 0.059 0.941
26 H 0.072 0.928
27 H 0.060 0.940
28 H 0.049 0.951
29 H 0.048 0.952
30 H 0.044 0.956
31 H 0.077 0.923
32 H 0.065 0.935
33 H 0.103 0.897
34 H 0.076 0.924
35 H 0.083 0.917
36 H 0.078 0.922
37 H 0.272 0.728
38 H 0.126 0.874
39 H 0.084 0.916
40 H 0.073 0.927
41 H 0.075 0.925
42 H 0.078 0.922
43 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.462 -11.643 -3.197 17.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.009 4.009
3 O -0.275 6.275
4 N -0.130 5.130
5 C -0.083 4.083
6 C -0.147 4.147
7 C -0.091 4.091
8 C -0.172 4.172
9 C 0.246 3.754
10 O -0.454 6.454
11 N -0.166 5.166
12 C -0.439 4.439
13 H 0.126 0.874
14 C -0.173 4.173
15 N -0.517 5.517
16 Si 0.752 3.248
17 H -0.191 1.191
18 H -0.205 1.205
19 H -0.210 1.210
20 C 0.094 3.906
21 C -0.072 4.072
22 N -0.154 5.154
23 C -0.148 4.148
24 C -0.083 4.083
25 H 0.079 0.921
26 H 0.090 0.910
27 H 0.079 0.921
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.062 0.938
31 H 0.096 0.904
32 H 0.083 0.917
33 H 0.121 0.879
34 H 0.095 0.905
35 H 0.101 0.899
36 H 0.097 0.903
37 H 0.083 0.917
38 H 0.144 0.856
39 H 0.102 0.898
40 H 0.092 0.908
41 H 0.093 0.907
42 H 0.096 0.904
43 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -12.317 -10.604 -4.158 16.776
hybrid contribution 0.461 0.792 0.969 1.334
sum -11.856 -9.812 -3.189 15.717
Atomic orbital electron populations
1.21774 0.94008 1.02224 1.02804 1.22235 0.93576 0.84611 1.00472
1.90666 1.13635 1.26288 1.96916 1.67563 0.90973 1.50841 1.03673
1.22445 0.96458 0.98030 0.91356 1.21802 0.91469 1.00839 1.00633
1.20937 0.93755 1.00430 0.93973 1.21659 0.95865 1.01190 0.98442
1.20157 0.82580 0.84850 0.87823 1.90499 1.56588 1.50093 1.48209
1.43683 1.03342 1.46823 1.22722 1.19746 0.94439 1.34031 0.95730
0.87382 1.25272 0.97332 0.96242 0.98421 1.69866 1.11229 1.45288
1.25330 0.85876 0.79083 0.77946 0.81918 1.19121 1.20482 1.20962
1.18734 0.97874 0.89610 0.84406 1.29380 0.91727 0.93739 0.92357
1.80941 1.10088 1.09236 1.15181 1.21712 0.92540 1.02024 0.98505
1.22353 0.95831 0.97265 0.92824 0.92144 0.90953 0.92071 0.93269
0.93332 0.93798 0.90417 0.91669 0.87860 0.90549 0.89892 0.90313
0.91719 0.85585 0.89802 0.90792 0.90667 0.90379 0.93858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16
2 C 0.07 0.71 7.16 37.16 0.27 0.98 16
3 O -0.27 -3.68 10.60 -13.92 -0.15 -3.82 16
4 N -0.36 -4.86 5.00 -113.81 -0.57 -5.43 16
5 C 0.04 0.63 5.99 -3.83 -0.02 0.60 16
6 C -0.11 -1.60 5.09 -26.65 -0.14 -1.74 16
7 C -0.07 -1.07 1.90 -90.50 -0.17 -1.24 16
8 C -0.13 -2.09 3.78 -27.88 -0.11 -2.20 16
9 C 0.46 9.71 7.30 -10.99 -0.08 9.63 16
10 O -0.57 -13.88 13.64 5.55 0.08 -13.80 16
11 N -0.45 -9.99 2.60 -117.93 -0.31 -10.29 16
12 C -0.31 -7.85 9.32 -14.93 -0.14 -7.98 16
13 H 0.11 2.88 7.39 -52.49 -0.39 2.49 16
14 C 0.03 0.75 4.87 -17.46 -0.08 0.66 16
15 N -0.88 -21.88 9.48 55.50 0.53 -21.35 16
16 Si 0.93 19.38 29.60 -169.99 -5.03 14.35 16
17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16
18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
20 C 0.22 4.22 4.91 -6.83 -0.03 4.19 16
21 C 0.25 5.30 12.95 -20.72 -0.27 5.03 16
22 N -0.47 -11.07 18.54 42.19 0.78 -10.29 16
23 C -0.11 -1.31 5.38 -26.66 -0.14 -1.46 16
24 C 0.05 0.56 5.99 -3.84 -0.02 0.54 16
25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16
31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
33 H 0.10 1.79 6.04 -51.93 -0.31 1.48 16
34 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16
35 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16
36 H 0.08 1.25 7.51 -51.93 -0.39 0.86 16
37 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16
38 H 0.13 2.48 6.46 -51.93 -0.34 2.15 16
39 H 0.08 1.20 6.68 -51.93 -0.35 0.85 16
40 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16
41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 351.16 15.07 5.29 5.29
Total: -1.00 -29.97 351.16 -6.72 -36.69
By element:
Atomic # 1 Polarization: 9.24 SS G_CDS: -6.78 Total: 2.46 kcal
Atomic # 6 Polarization: 6.76 SS G_CDS: -0.56 Total: 6.20 kcal
Atomic # 7 Polarization: -47.80 SS G_CDS: 0.43 Total: -47.37 kcal
Atomic # 8 Polarization: -17.56 SS G_CDS: -0.07 Total: -17.63 kcal
Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -29.97 -6.72 -36.69 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597034242.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.288 kcal
(2) G-P(sol) polarization free energy of solvation -29.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.401 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds