Wall clock time and date at job start Tue Mar 31 2020 03:07:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42902 * 109.46960 * 2 1
4 4 N 1.46299 * 113.99785 * 179.97438 * 3 2 1
5 5 C 1.46855 * 111.00331 * 244.21452 * 4 3 2
6 6 C 1.53036 * 109.52474 * 174.16479 * 5 4 3
7 7 C 1.53113 * 109.28021 * 59.17664 * 6 5 4
8 8 C 1.53003 * 109.51994 * 182.44281 * 7 6 5
9 9 C 1.50699 * 109.46899 * 294.68032 * 8 7 6
10 10 O 1.21293 * 120.00051 * 0.02562 * 9 8 7
11 11 N 1.34776 * 120.00055 * 180.02562 * 9 8 7
12 12 C 1.37096 * 120.00130 * 180.02562 * 11 9 8
13 13 H 1.07989 * 120.00275 * 17.71873 * 12 11 9
14 14 C 1.38953 * 119.99943 * 197.72197 * 12 11 9
15 15 N 1.31417 * 120.00022 * 21.41636 * 14 12 11
16 16 Si 1.86802 * 120.00023 * 201.41488 * 14 12 11
17 17 H 1.48495 * 109.47008 * 0.02562 * 16 14 12
18 18 H 1.48498 * 109.46987 * 120.00193 * 16 14 12
19 19 H 1.48493 * 109.47045 * 239.99872 * 16 14 12
20 20 C 1.46502 * 119.99888 * 0.02562 * 11 9 8
21 21 C 1.47206 * 109.47064 * 84.22871 * 20 11 9
22 22 N 9.44734 * 163.02307 * 33.91581 * 3 1 2
23 23 C 1.53119 * 109.16213 * 302.34759 * 7 6 5
24 24 C 1.46851 * 111.00206 * 120.00663 * 4 3 2
25 25 H 1.08998 * 109.46969 * 59.99937 * 1 2 3
26 26 H 1.08999 * 109.46787 * 179.97438 * 1 2 3
27 27 H 1.09002 * 109.46992 * 299.99856 * 1 2 3
28 28 H 1.09000 * 109.47506 * 120.00600 * 2 1 3
29 29 H 1.09005 * 109.46895 * 240.00659 * 2 1 3
30 30 H 1.08999 * 109.45603 * 294.18109 * 5 4 3
31 31 H 1.08998 * 109.46189 * 54.14387 * 5 4 3
32 32 H 1.09002 * 109.50003 * 299.23410 * 6 5 4
33 33 H 1.08997 * 109.53081 * 179.14338 * 6 5 4
34 34 H 1.09001 * 109.57408 * 62.28509 * 7 6 5
35 35 H 1.08992 * 109.47621 * 54.68176 * 8 7 6
36 36 H 1.08999 * 109.46779 * 174.68863 * 8 7 6
37 37 H 0.96996 * 120.00041 * 179.97438 * 15 14 12
38 38 H 1.08998 * 109.47470 * 204.22827 * 20 11 9
39 39 H 1.09000 * 109.47242 * 324.23024 * 20 11 9
40 40 H 1.09008 * 109.50194 * 297.71367 * 23 7 6
41 41 H 1.09001 * 109.53468 * 177.61566 * 23 7 6
42 42 H 1.09007 * 109.45638 * 305.85429 * 24 4 3
43 43 H 1.08996 * 109.46417 * 65.82935 * 24 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 7 3.4647 1.4628 0.0006
5 6 3.9418 2.0991 1.2352
6 6 5.4716 2.0717 1.2665
7 6 6.0157 2.8154 0.0437
8 6 7.5438 2.7392 0.0371
9 6 8.0892 3.4884 1.2255
10 8 7.3304 4.0297 2.0016
11 7 9.4202 3.5571 1.4259
12 6 9.9164 4.2382 2.5073
13 1 9.2710 4.4713 3.3411
14 6 11.2497 4.6287 2.5303
15 7 11.9220 4.7378 1.4064
16 14 12.0866 4.9987 4.1589
17 1 11.1194 4.8019 5.2683
18 1 13.2414 4.0831 4.3412
19 1 12.5645 6.4046 4.1616
20 6 10.3368 2.9038 0.4881
21 6 10.5888 3.7972 -0.6544
22 7 10.7837 4.4842 -1.5392
23 6 5.4653 2.1629 -1.2275
24 6 3.9358 2.1877 -1.1865
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8934 -0.5139 0.8899
29 1 1.8933 -0.5138 -0.8901
30 1 3.5963 3.1323 1.2681
31 1 3.5512 1.5580 2.0970
32 1 5.8175 1.0382 1.2475
33 1 5.8263 2.5575 2.1755
34 1 5.7032 3.8590 0.0821
35 1 7.8559 1.6963 0.0906
36 1 7.9259 3.1862 -0.8807
37 1 12.8526 5.0107 1.4225
38 1 11.2779 2.6850 0.9927
39 1 9.8912 1.9751 0.1318
40 1 5.8111 1.1308 -1.2857
41 1 5.8150 2.7137 -2.1007
42 1 3.5407 1.7108 -2.0836
43 1 3.5905 3.2205 -1.1421
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597034242.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:42
Heat of formation + Delta-G solvation = -26.227947 kcal
Electronic energy + Delta-G solvation = -24123.541003 eV
Core-core repulsion = 20591.084413 eV
Total energy + Delta-G solvation = -3532.456590 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 3.45 seconds
Orbital eigenvalues (eV)
-40.91057 -39.48545 -37.69713 -37.16868 -36.09846 -34.05693 -33.55809 -31.83148
-31.35513 -29.26984 -28.57294 -26.29895 -24.08646 -23.68192 -23.12423 -20.86103
-20.43822 -19.68204 -18.33965 -18.10901 -17.82228 -16.62563 -16.55185 -16.14185
-16.02480 -15.67635 -15.41896 -15.20788 -14.67993 -14.60312 -14.56955 -14.34311
-13.83634 -13.74441 -13.43080 -13.18302 -13.14513 -13.05198 -12.95326 -12.79104
-12.60406 -12.35256 -12.30267 -12.17928 -12.12571 -12.02295 -11.60267 -11.45805
-11.28602 -11.06354 -10.75212 -10.23502 -9.85109 -9.74783 -8.37694 -5.92077
1.39231 1.49065 1.54059 1.60917 1.87265 2.11681 2.28951 2.37940
3.03274 3.16465 3.63963 3.64377 3.80393 3.87679 4.03274 4.19128
4.25018 4.26375 4.38872 4.43731 4.44713 4.51241 4.62336 4.64602
4.70029 4.77526 4.86677 4.90749 4.95075 4.99937 5.03608 5.08356
5.09823 5.23429 5.28535 5.38127 5.51910 5.52202 5.81047 6.09690
6.11955 6.45240 7.04342 7.18264 7.42536 8.00760 8.66272
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.027670 B = 0.003297 C = 0.003024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.695827 B = 8490.563711 C = 9256.398570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.062 3.938
3 O -0.290 6.290
4 N -0.360 5.360
5 C 0.050 3.950
6 C -0.102 4.102
7 C -0.070 4.070
8 C -0.120 4.120
9 C 0.451 3.549
10 O -0.610 6.610
11 N -0.460 5.460
12 C -0.336 4.336
13 H 0.081 0.919
14 C 0.004 3.996
15 N -0.895 5.895
16 Si 0.983 3.017
17 H -0.272 1.272
18 H -0.263 1.263
19 H -0.292 1.292
20 C 0.222 3.778
21 C 0.259 3.741
22 N -0.511 5.511
23 C -0.099 4.099
24 C 0.044 3.956
25 H 0.059 0.941
26 H 0.096 0.904
27 H 0.055 0.945
28 H 0.050 0.950
29 H 0.056 0.944
30 H 0.023 0.977
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.071 0.929
34 H 0.044 0.956
35 H 0.123 0.877
36 H 0.086 0.914
37 H 0.273 0.727
38 H 0.121 0.879
39 H 0.142 0.858
40 H 0.094 0.906
41 H 0.089 0.911
42 H 0.096 0.904
43 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.630 -13.961 -4.174 19.284
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.015 4.015
3 O -0.295 6.295
4 N -0.128 5.128
5 C -0.078 4.078
6 C -0.140 4.140
7 C -0.089 4.089
8 C -0.160 4.160
9 C 0.242 3.758
10 O -0.495 6.495
11 N -0.181 5.181
12 C -0.464 4.464
13 H 0.099 0.901
14 C -0.198 4.198
15 N -0.534 5.534
16 Si 0.808 3.192
17 H -0.196 1.196
18 H -0.188 1.188
19 H -0.219 1.219
20 C 0.095 3.905
21 C -0.059 4.059
22 N -0.192 5.192
23 C -0.136 4.136
24 C -0.084 4.084
25 H 0.078 0.922
26 H 0.114 0.886
27 H 0.074 0.926
28 H 0.068 0.932
29 H 0.074 0.926
30 H 0.042 0.958
31 H 0.101 0.899
32 H 0.102 0.898
33 H 0.089 0.911
34 H 0.063 0.937
35 H 0.141 0.859
36 H 0.104 0.896
37 H 0.083 0.917
38 H 0.139 0.861
39 H 0.159 0.841
40 H 0.113 0.887
41 H 0.107 0.893
42 H 0.114 0.886
43 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges -12.480 -12.942 -5.153 18.703
hybrid contribution 0.422 1.528 1.296 2.047
sum -12.058 -11.415 -3.858 17.046
Atomic orbital electron populations
1.21785 0.92317 1.03696 1.02501 1.22470 0.94898 0.83268 1.00844
1.90662 1.13386 1.28422 1.97006 1.67576 0.91372 1.50438 1.03452
1.22335 0.96129 0.97039 0.92329 1.21648 0.91827 1.01327 0.99171
1.20898 0.93221 0.99055 0.95737 1.21664 0.96178 1.02510 0.95667
1.21146 0.82015 0.84173 0.88495 1.90487 1.57549 1.51543 1.49917
1.43866 1.04304 1.47093 1.22815 1.19611 0.94746 1.35555 0.96464
0.90134 1.25834 0.97276 0.95812 1.00896 1.69944 1.11286 1.45702
1.26440 0.85032 0.78285 0.77339 0.78579 1.19637 1.18811 1.21858
1.19079 0.97711 0.90687 0.82989 1.29882 0.90632 0.93220 0.92158
1.80945 1.11350 1.10260 1.16660 1.21650 0.91933 1.02994 0.97071
1.22434 0.96237 0.96612 0.93141 0.92224 0.88578 0.92583 0.93192
0.92589 0.95828 0.89895 0.89828 0.91095 0.93732 0.85946 0.89615
0.91738 0.86096 0.84077 0.88709 0.89276 0.88573 0.95309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.04 10.28 71.98 0.74 -1.30 16
2 C 0.06 1.18 7.16 71.98 0.52 1.69 16
3 O -0.29 -7.53 10.60 -50.16 -0.53 -8.06 16
4 N -0.36 -9.14 5.00 -514.00 -2.57 -11.71 16
5 C 0.05 1.38 5.99 86.32 0.52 1.90 16
6 C -0.10 -2.91 5.09 30.64 0.16 -2.76 16
7 C -0.07 -1.99 1.90 -10.72 -0.02 -2.01 16
8 C -0.12 -3.56 3.78 29.85 0.11 -3.44 16
9 C 0.45 19.03 7.30 87.66 0.64 19.67 16
10 O -0.61 -30.58 13.64 -3.07 -0.04 -30.62 16
11 N -0.46 -20.43 2.60 -645.41 -1.68 -22.10 16
12 C -0.34 -17.12 9.32 84.04 0.78 -16.34 16
13 H 0.08 4.47 7.39 -2.92 -0.02 4.45 16
14 C 0.00 0.17 4.87 84.93 0.41 0.58 16
15 N -0.89 -44.20 9.48 21.66 0.21 -44.00 16
16 Si 0.98 39.86 29.60 68.60 2.03 41.89 16
17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16
19 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16
20 C 0.22 8.01 4.91 84.58 0.42 8.43 16
21 C 0.26 10.77 12.95 89.43 1.16 11.93 16
22 N -0.51 -23.42 18.54 20.02 0.37 -23.05 16
23 C -0.10 -2.08 5.38 30.64 0.16 -1.91 16
24 C 0.04 1.00 5.99 86.32 0.52 1.52 16
25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16
30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
33 H 0.07 2.53 6.04 -2.39 -0.01 2.51 16
34 H 0.04 1.54 7.95 -2.39 -0.02 1.52 16
35 H 0.12 2.68 7.42 -2.39 -0.02 2.66 16
36 H 0.09 2.48 7.51 -2.39 -0.02 2.47 16
37 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16
38 H 0.12 4.56 6.46 -2.39 -0.02 4.55 16
39 H 0.14 3.42 6.68 -2.39 -0.02 3.40 16
40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16
41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16
42 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16
43 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16
Total: -1.00 -66.75 351.16 4.90 -61.85
By element:
Atomic # 1 Polarization: 16.85 SS G_CDS: 1.00 Total: 17.84 kcal
Atomic # 6 Polarization: 11.85 SS G_CDS: 6.11 Total: 17.96 kcal
Atomic # 7 Polarization: -97.20 SS G_CDS: -3.67 Total: -100.87 kcal
Atomic # 8 Polarization: -38.10 SS G_CDS: -0.57 Total: -38.68 kcal
Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal
Total: -66.75 4.90 -61.85 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597034242.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.625 kcal
(2) G-P(sol) polarization free energy of solvation -66.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.853 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.45 seconds