Wall clock time and date at job start Tue Mar 31 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.50693 * 109.47494 * 239.99737 * 2 1 3 5 5 H 1.08008 * 120.00047 * 239.99825 * 4 2 1 6 6 C 1.37876 * 120.00169 * 59.99781 * 4 2 1 7 7 N 1.31516 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47513 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46930 * 120.00129 * 8 6 4 11 11 H 1.48503 * 109.47084 * 239.99611 * 8 6 4 12 12 C 1.53004 * 109.46976 * 119.99409 * 2 1 3 13 13 N 1.46507 * 109.47003 * 300.00509 * 12 2 1 14 14 C 1.34780 * 119.99433 * 180.02562 * 13 12 2 15 15 O 1.21579 * 120.00364 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99446 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99872 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47050 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.46942 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47084 * 179.97438 * 19 18 17 21 21 C 1.34429 * 126.81895 * 124.99739 * 20 19 18 22 22 N 1.30837 * 108.07952 * 180.02562 * 21 20 19 23 23 C 1.33246 * 109.82318 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94935 * 0.27015 * 23 22 21 25 25 H 1.08999 * 109.47348 * 300.00181 * 1 2 3 26 26 H 1.09003 * 109.46867 * 60.00657 * 1 2 3 27 27 H 1.09006 * 109.46695 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47134 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46846 * 299.99356 * 3 2 1 30 30 H 1.08998 * 109.47239 * 59.99234 * 3 2 1 31 31 H 0.97003 * 119.99920 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47121 * 180.02562 * 12 2 1 33 33 H 1.08994 * 109.46735 * 60.00370 * 12 2 1 34 34 H 0.96990 * 119.99977 * 359.97438 * 13 12 2 35 35 H 0.97005 * 120.00338 * 0.02562 * 16 14 13 36 36 H 1.09007 * 109.46587 * 60.00945 * 17 16 14 37 37 H 1.08996 * 109.47100 * 300.00336 * 17 16 14 38 38 H 1.09002 * 109.47043 * 60.00178 * 18 17 16 39 39 H 1.08996 * 109.47276 * 300.00023 * 18 17 16 40 40 H 1.09002 * 109.47279 * 60.00111 * 19 18 17 41 41 H 1.08995 * 109.47424 * 300.00289 * 19 18 17 42 42 H 1.08000 * 125.96340 * 359.97438 * 21 20 19 43 43 H 1.08002 * 125.52127 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 3.1468 -2.2872 -3.6035 10 1 1.1663 -1.5870 -4.8159 11 1 3.1468 -0.1876 -4.8164 12 6 2.0400 -0.7211 1.2494 13 7 1.5515 -0.0304 2.4455 14 6 1.8775 -0.4906 3.6696 15 8 2.5766 -1.4790 3.7813 16 7 1.4286 0.1451 4.7700 17 6 1.7825 -0.3553 6.1007 18 6 1.1491 0.5403 7.1673 19 6 1.5193 0.0180 8.5570 20 7 0.9133 0.8758 9.5784 21 6 0.1090 0.4874 10.5830 22 7 -0.2199 1.5489 11.2735 23 6 0.3532 2.6285 10.7429 24 7 1.0530 2.2681 9.6994 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 0.7088 1.1610 -3.4845 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2494 34 1 0.9942 0.7583 2.3564 35 1 0.8706 0.9336 4.6809 36 1 2.8664 -0.3468 6.2155 37 1 1.4128 -1.3741 6.2158 38 1 0.0653 0.5315 7.0523 39 1 1.5185 1.5592 7.0523 40 1 2.6032 0.0271 8.6718 41 1 1.1503 -1.0011 8.6723 42 1 -0.2108 -0.5243 10.7844 43 1 0.2516 3.6384 11.1121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601613783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:53 Heat of formation + Delta-G solvation = 50.792191 kcal Electronic energy + Delta-G solvation = -22916.621656 eV Core-core repulsion = 19419.797660 eV Total energy + Delta-G solvation = -3496.823995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 6.67 seconds Orbital eigenvalues (eV) -42.40086 -39.66376 -36.90178 -36.09630 -34.18597 -33.26714 -31.58718 -31.32342 -30.45117 -26.61062 -25.73086 -25.46680 -24.57440 -22.80166 -22.34481 -21.56362 -20.61074 -18.79860 -18.10365 -17.76491 -16.45954 -15.97573 -15.78918 -15.70705 -15.17107 -14.81137 -14.73232 -14.42395 -13.97005 -13.74124 -13.39200 -13.10158 -12.87639 -12.72532 -12.20045 -12.16118 -12.05590 -11.48180 -11.33142 -11.21190 -10.88207 -10.66421 -10.39362 -10.38346 -10.22251 -10.17623 -10.10054 -9.83023 -9.63918 -9.32060 -9.06658 -8.78911 -8.42799 -8.22122 -6.02876 -4.12670 1.25426 1.88362 2.61096 3.00771 3.26656 3.35365 3.40329 3.59247 3.94998 3.97955 4.33555 4.39066 4.43160 4.60779 4.71429 4.79027 4.86510 5.06530 5.24024 5.31858 5.64790 5.73109 5.85501 6.05330 6.19491 6.35433 6.38467 6.49396 6.55212 6.78360 6.82091 6.89258 7.02329 7.07437 7.26526 7.39153 7.55296 7.69454 7.70378 8.00543 8.11893 8.37058 8.44282 8.87328 8.99710 9.53126 10.98603 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.043954 B = 0.002146 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.878297 B =13043.286810 C =13370.744642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.698 3.302 15 O -0.600 6.600 16 N -0.755 5.755 17 C 0.145 3.855 18 C -0.143 4.143 19 C 0.133 3.867 20 N -0.378 5.378 21 C 0.254 3.746 22 N -0.550 5.550 23 C 0.196 3.804 24 N -0.316 5.316 25 H 0.005 0.995 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.394 0.606 35 H 0.395 0.605 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.219 0.781 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 1.498 22.498 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.398 3.602 15 O -0.479 6.479 16 N -0.412 5.412 17 C 0.019 3.981 18 C -0.182 4.182 19 C 0.010 3.990 20 N -0.169 5.169 21 C -0.043 4.043 22 N -0.277 5.277 23 C -0.107 4.107 24 N -0.144 5.144 25 H 0.024 0.976 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.235 0.765 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.748 1.115 22.194 22.291 hybrid contribution -0.259 0.088 -0.958 0.996 sum -2.008 1.203 21.237 21.365 Atomic orbital electron populations 1.21822 0.97782 0.99147 0.99999 1.18376 0.92804 0.92798 0.90589 1.21820 0.98593 0.98352 1.00004 1.21020 1.31328 1.12063 0.89825 0.92340 1.24892 0.94899 0.94956 0.98891 1.69816 1.36749 1.22823 1.23100 0.86510 0.78623 0.79756 0.82962 1.19739 1.21084 1.21087 1.21597 0.97898 0.95417 0.82379 1.45514 1.55530 1.33008 1.04596 1.16044 0.80522 0.82978 0.80681 1.90882 1.43125 1.27774 1.86114 1.45043 1.57833 1.33568 1.04776 1.20916 0.99943 0.96971 0.80231 1.22044 1.02289 1.01516 0.92365 1.21752 0.99640 0.92179 0.85398 1.50596 1.36970 1.05856 1.23451 1.26123 0.91194 1.00640 0.86359 1.70558 1.28015 0.97931 1.31199 1.26044 0.93693 0.99712 0.91235 1.78070 1.25211 0.89498 1.21623 0.97580 0.89636 0.95453 0.95436 0.89648 0.97559 0.93079 0.92926 0.92926 0.77165 0.77209 0.91410 0.91507 0.90560 0.89575 0.88654 0.87453 0.76461 0.76716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -23.52 9.35 55.43 0.52 -23.00 16 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.15 3.19 4.50 -4.04 -0.02 3.17 16 13 N -0.73 -12.93 4.96 -65.22 -0.32 -13.25 16 14 C 0.70 12.02 8.57 -86.92 -0.74 11.27 16 15 O -0.60 -12.66 16.34 5.30 0.09 -12.58 16 16 N -0.75 -9.10 5.56 -65.22 -0.36 -9.46 16 17 C 0.15 1.35 5.67 -4.04 -0.02 1.32 16 18 C -0.14 -0.95 5.54 -26.73 -0.15 -1.10 16 19 C 0.13 0.68 6.55 -4.04 -0.03 0.65 16 20 N -0.38 -2.84 3.69 -62.63 -0.23 -3.07 16 21 C 0.25 1.71 12.63 -90.65 -1.14 0.56 16 22 N -0.55 -5.09 11.19 -15.83 -0.18 -5.27 16 23 C 0.20 1.72 13.03 -91.81 -1.20 0.52 16 24 N -0.32 -3.11 12.56 29.29 0.37 -2.74 16 25 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 26 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.39 6.23 6.18 -40.82 -0.25 5.97 16 35 H 0.39 3.84 8.49 -40.82 -0.35 3.49 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.24 8.09 -51.93 -0.42 -0.18 16 42 H 0.22 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.22 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -33.23 354.89 -9.49 -42.72 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.55 Total: 5.09 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.15 Total: 0.57 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.21 Total: -56.80 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.23 -9.49 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.515 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.68 seconds