Wall clock time and date at job start Tue Mar 31 2020 04:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.50693 * 109.47494 * 239.99737 * 2 1 3 5 5 H 1.08008 * 120.00047 * 239.99825 * 4 2 1 6 6 C 1.37876 * 120.00169 * 59.99781 * 4 2 1 7 7 N 1.31516 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47513 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46930 * 120.00129 * 8 6 4 11 11 H 1.48503 * 109.47084 * 239.99611 * 8 6 4 12 12 C 1.53004 * 109.46976 * 119.99409 * 2 1 3 13 13 N 1.46507 * 109.47003 * 300.00509 * 12 2 1 14 14 C 1.34780 * 119.99433 * 180.02562 * 13 12 2 15 15 O 1.21579 * 120.00364 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99446 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99872 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47050 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.46942 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47084 * 179.97438 * 19 18 17 21 21 C 1.34429 * 126.81895 * 124.99739 * 20 19 18 22 22 N 1.30837 * 108.07952 * 180.02562 * 21 20 19 23 23 C 1.33246 * 109.82318 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94935 * 0.27015 * 23 22 21 25 25 H 1.08999 * 109.47348 * 300.00181 * 1 2 3 26 26 H 1.09003 * 109.46867 * 60.00657 * 1 2 3 27 27 H 1.09006 * 109.46695 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47134 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46846 * 299.99356 * 3 2 1 30 30 H 1.08998 * 109.47239 * 59.99234 * 3 2 1 31 31 H 0.97003 * 119.99920 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47121 * 180.02562 * 12 2 1 33 33 H 1.08994 * 109.46735 * 60.00370 * 12 2 1 34 34 H 0.96990 * 119.99977 * 359.97438 * 13 12 2 35 35 H 0.97005 * 120.00338 * 0.02562 * 16 14 13 36 36 H 1.09007 * 109.46587 * 60.00945 * 17 16 14 37 37 H 1.08996 * 109.47100 * 300.00336 * 17 16 14 38 38 H 1.09002 * 109.47043 * 60.00178 * 18 17 16 39 39 H 1.08996 * 109.47276 * 300.00023 * 18 17 16 40 40 H 1.09002 * 109.47279 * 60.00111 * 19 18 17 41 41 H 1.08995 * 109.47424 * 300.00289 * 19 18 17 42 42 H 1.08000 * 125.96340 * 359.97438 * 21 20 19 43 43 H 1.08002 * 125.52127 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 3.1468 -2.2872 -3.6035 10 1 1.1663 -1.5870 -4.8159 11 1 3.1468 -0.1876 -4.8164 12 6 2.0400 -0.7211 1.2494 13 7 1.5515 -0.0304 2.4455 14 6 1.8775 -0.4906 3.6696 15 8 2.5766 -1.4790 3.7813 16 7 1.4286 0.1451 4.7700 17 6 1.7825 -0.3553 6.1007 18 6 1.1491 0.5403 7.1673 19 6 1.5193 0.0180 8.5570 20 7 0.9133 0.8758 9.5784 21 6 0.1090 0.4874 10.5830 22 7 -0.2199 1.5489 11.2735 23 6 0.3532 2.6285 10.7429 24 7 1.0530 2.2681 9.6994 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 0.7088 1.1610 -3.4845 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2494 34 1 0.9942 0.7583 2.3564 35 1 0.8706 0.9336 4.6809 36 1 2.8664 -0.3468 6.2155 37 1 1.4128 -1.3741 6.2158 38 1 0.0653 0.5315 7.0523 39 1 1.5185 1.5592 7.0523 40 1 2.6032 0.0271 8.6718 41 1 1.1503 -1.0011 8.6723 42 1 -0.2108 -0.5243 10.7844 43 1 0.2516 3.6384 11.1121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601613783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:45 Heat of formation + Delta-G solvation = 29.865418 kcal Electronic energy + Delta-G solvation = -22917.529109 eV Core-core repulsion = 19419.797660 eV Total energy + Delta-G solvation = -3497.731448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.94203 -41.02571 -38.35668 -37.12300 -35.13076 -34.90767 -32.81565 -32.14896 -31.56168 -27.67381 -27.55389 -27.23398 -26.01754 -23.53497 -22.86134 -22.22866 -21.85735 -20.57903 -19.44961 -18.31776 -17.76091 -17.15429 -17.01656 -16.63558 -16.54462 -15.93403 -15.73630 -15.30442 -15.18914 -14.92196 -14.66364 -14.60642 -14.00870 -13.76891 -13.71745 -13.19537 -13.09841 -12.80696 -12.72799 -12.66916 -12.55861 -12.24763 -12.13361 -11.97840 -11.47403 -11.39387 -11.14778 -10.97212 -10.77541 -10.68947 -10.60485 -10.40715 -10.28615 -9.64543 -8.01834 -6.17151 0.72826 1.40245 1.41717 1.46035 1.55340 1.86524 2.04648 2.21906 2.46744 3.21862 3.36016 3.57302 3.58560 3.84702 3.96438 4.13079 4.22627 4.41881 4.43703 4.52309 4.55631 4.67528 4.72728 4.99127 5.01074 5.07002 5.09123 5.13188 5.21282 5.32750 5.39596 5.49064 5.53270 5.64369 5.68128 5.68424 5.95631 6.07622 6.16143 6.23111 6.44641 6.87566 7.15616 7.16236 7.50525 7.64645 8.97250 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.043954 B = 0.002146 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.878297 B =13043.286810 C =13370.744642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.525 4.525 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.168 3.832 13 N -0.727 5.727 14 C 0.696 3.304 15 O -0.641 6.641 16 N -0.737 5.737 17 C 0.144 3.856 18 C -0.126 4.126 19 C 0.130 3.870 20 N -0.382 5.382 21 C 0.260 3.740 22 N -0.583 5.583 23 C 0.189 3.811 24 N -0.353 5.353 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.405 0.595 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.143 0.857 42 H 0.260 0.740 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 1.306 23.880 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.564 4.564 5 H 0.063 0.937 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.043 3.957 13 N -0.383 5.383 14 C 0.396 3.604 15 O -0.523 6.523 16 N -0.394 5.394 17 C 0.019 3.981 18 C -0.164 4.164 19 C 0.009 3.991 20 N -0.172 5.172 21 C -0.036 4.036 22 N -0.311 5.311 23 C -0.114 4.114 24 N -0.181 5.181 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.241 0.759 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.161 0.839 42 H 0.276 0.724 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.438 0.963 23.608 23.753 hybrid contribution -0.057 0.136 -1.325 1.333 sum -2.495 1.099 22.283 22.449 Atomic orbital electron populations 1.21659 0.97080 0.98674 1.00317 1.18374 0.93300 0.93024 0.90332 1.21661 0.97900 0.97900 1.00310 1.21297 1.31505 1.12092 0.91494 0.93659 1.25470 0.95223 0.95653 1.01023 1.69919 1.37080 1.23360 1.23497 0.85697 0.78097 0.78731 0.80213 1.19938 1.20762 1.20830 1.21114 0.96676 0.94695 0.83208 1.45217 1.55822 1.33200 1.04021 1.16174 0.80213 0.82696 0.81318 1.90857 1.44977 1.29720 1.86726 1.44942 1.56742 1.33271 1.04430 1.21070 0.99912 0.97796 0.79274 1.21836 1.02043 1.00092 0.92470 1.21946 1.00043 0.93282 0.83842 1.50696 1.37205 1.05265 1.24051 1.26943 0.89718 1.01712 0.85201 1.70568 1.29250 0.98796 1.32484 1.26513 0.93203 1.00698 0.90952 1.77999 1.26383 0.91172 1.22548 0.94472 0.91982 0.96265 0.96355 0.91974 0.94494 0.93080 0.94670 0.94522 0.75874 0.75542 0.92014 0.91003 0.90198 0.90934 0.88364 0.83932 0.72400 0.74869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -27.66 8.01 25.60 0.21 -27.46 16 5 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.36 5.15 84.65 0.44 1.80 16 7 N -0.90 -47.80 9.35 21.45 0.20 -47.60 16 8 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.11 4.50 86.38 0.39 7.50 16 13 N -0.73 -24.67 4.96 -478.52 -2.38 -27.05 16 14 C 0.70 23.04 8.57 179.05 1.53 24.57 16 15 O -0.64 -26.71 16.34 -3.96 -0.06 -26.77 16 16 N -0.74 -16.22 5.56 -478.53 -2.66 -18.88 16 17 C 0.14 2.37 5.67 86.38 0.49 2.86 16 18 C -0.13 -1.37 5.54 30.59 0.17 -1.20 16 19 C 0.13 0.97 6.55 86.38 0.57 1.54 16 20 N -0.38 -4.92 3.69 -352.06 -1.30 -6.22 16 21 C 0.26 2.85 12.63 180.36 2.28 5.13 16 22 N -0.58 -9.95 11.19 -203.99 -2.28 -12.23 16 23 C 0.19 3.15 13.03 180.76 2.36 5.50 16 24 N -0.35 -6.57 12.56 -61.24 -0.77 -7.34 16 25 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 26 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 27 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 31 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.40 11.81 6.18 -92.72 -0.57 11.24 16 35 H 0.41 6.86 8.49 -92.70 -0.79 6.08 16 36 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.14 0.07 8.09 -2.39 -0.02 0.05 16 42 H 0.26 0.14 8.06 -2.91 -0.02 0.12 16 43 H 0.24 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -72.46 354.89 2.00 -70.46 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.33 Total: 17.93 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 9.56 Total: 13.15 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -9.19 Total: -119.32 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.46 2.00 -70.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.325 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds