Wall clock time and date at job start Tue Mar 31 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46761 * 124.34599 * 2 1 4 4 C 1.54487 * 105.46997 * 162.96012 * 3 2 1 5 5 C 1.54625 * 101.79968 * 25.39943 * 4 3 2 6 6 H 1.08994 * 110.48798 * 216.53980 * 5 4 3 7 7 C 1.50700 * 110.48470 * 93.89346 * 5 4 3 8 8 O 1.21279 * 120.00281 * 263.57936 * 7 5 4 9 9 N 1.34779 * 119.99582 * 83.58720 * 7 5 4 10 10 C 1.47073 * 120.88406 * 4.28650 * 9 7 5 11 11 C 1.53693 * 108.27885 * 128.75433 * 10 9 7 12 12 N 1.46900 * 109.25838 * 54.08277 * 11 10 9 13 13 C 1.46896 * 111.00507 * 172.60516 * 12 11 10 14 14 C 1.50701 * 109.47248 * 294.30786 * 13 12 11 15 15 H 1.07999 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00169 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00295 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47109 * 59.99357 * 18 16 14 20 20 H 1.48499 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47057 * 299.99840 * 18 16 14 22 22 C 1.46894 * 111.26757 * 296.75963 * 12 11 10 23 23 C 1.47089 * 120.87913 * 184.56364 * 9 7 5 24 24 C 1.34418 * 124.35264 * 179.97438 * 2 1 3 25 25 O 1.21285 * 124.93708 * 0.44057 * 24 2 1 26 26 H 1.08995 * 109.46981 * 90.00079 * 1 2 3 27 27 H 1.09004 * 109.46593 * 209.99700 * 1 2 3 28 28 H 1.08993 * 109.47343 * 329.99817 * 1 2 3 29 29 H 1.09007 * 110.24794 * 43.96636 * 3 2 1 30 30 H 1.08999 * 110.32298 * 282.00308 * 3 2 1 31 31 H 1.09009 * 110.96484 * 143.53413 * 4 3 2 32 32 H 1.08999 * 110.97129 * 267.25673 * 4 3 2 33 33 H 1.09005 * 109.63071 * 248.52515 * 10 9 7 34 34 H 1.09001 * 109.62959 * 9.10465 * 10 9 7 35 35 H 1.08994 * 109.65095 * 294.08075 * 11 10 9 36 36 H 1.09000 * 109.44597 * 173.95831 * 11 10 9 37 37 H 1.09004 * 109.46589 * 54.30287 * 13 12 11 38 38 H 1.08991 * 109.47473 * 174.30018 * 13 12 11 39 39 H 0.97000 * 119.99881 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.49151 * 303.13944 * 22 12 11 41 41 H 1.09000 * 109.51626 * 183.07405 * 22 12 11 42 42 H 1.08996 * 109.62666 * 350.89457 * 23 9 7 43 43 H 1.09003 * 109.62336 * 111.27999 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 0.4363 5 6 3.6905 -0.7380 0.0118 6 1 4.2331 -1.3454 0.7361 7 6 4.2855 -0.8979 -1.3636 8 8 3.5615 -0.9506 -2.3351 9 7 5.6222 -0.9825 -1.5138 10 6 6.5128 -1.0151 -0.3438 11 6 7.4601 -2.2163 -0.4924 12 7 8.1434 -2.1368 -1.7904 13 6 9.1853 -3.1665 -1.9009 14 6 10.2741 -2.8892 -0.8965 15 1 10.1997 -2.0335 -0.2419 16 6 11.3656 -3.7275 -0.8141 17 7 11.4564 -4.7694 -1.6116 18 14 12.7156 -3.3835 0.4303 19 1 12.1429 -3.4042 1.8003 20 1 13.7687 -4.4244 0.3187 21 1 13.3080 -2.0485 0.1616 22 6 7.1882 -2.2329 -2.9022 23 6 6.2294 -1.0386 -2.8523 24 6 2.2236 -1.1097 0.0005 25 8 1.7947 -2.2442 -0.0066 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.8982 1.9385 0.7100 30 1 2.3311 1.6442 -0.9998 31 1 4.4755 1.3011 -0.0960 32 1 3.8267 0.8458 1.5147 33 1 7.0912 -0.0923 -0.2980 34 1 5.9203 -1.1247 0.5645 35 1 6.8885 -3.1427 -0.4385 36 1 8.1986 -2.1974 0.3091 37 1 8.7500 -4.1462 -1.7038 38 1 9.6058 -3.1514 -2.9063 39 1 12.2245 -5.3589 -1.5539 40 1 6.6203 -3.1592 -2.8147 41 1 7.7290 -2.2259 -3.8485 42 1 5.4493 -1.1637 -3.6032 43 1 6.7781 -0.1165 -3.0444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:23 Heat of formation + Delta-G solvation = -47.125685 kcal Electronic energy + Delta-G solvation = -24518.345037 eV Core-core repulsion = 20984.982253 eV Total energy + Delta-G solvation = -3533.362784 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21706 -39.37295 -37.45295 -36.55408 -34.52181 -33.26137 -32.37152 -30.84755 -28.64639 -27.90806 -26.99770 -25.49785 -23.42824 -22.99586 -21.91883 -20.84859 -19.75751 -18.80561 -17.57832 -16.89503 -16.46268 -16.34638 -15.74075 -15.25904 -15.05336 -14.78070 -14.46132 -14.08200 -13.95832 -13.73367 -13.70647 -13.52520 -13.14247 -12.86398 -12.76164 -12.52781 -12.30742 -11.94052 -11.83283 -11.71678 -11.32072 -11.10149 -10.99311 -10.78840 -10.64355 -10.57750 -10.03095 -9.92618 -9.71855 -9.32137 -8.95548 -8.57233 -8.47313 -7.36838 -6.08053 -4.10606 2.26172 2.51921 2.73926 3.14862 3.29200 3.34278 3.35944 3.95689 4.10346 4.32562 4.36806 4.53084 4.69680 4.78964 4.95055 5.05439 5.11844 5.21663 5.25972 5.28305 5.33882 5.40834 5.45134 5.47869 5.56366 5.61799 5.70348 5.82394 5.97255 6.23777 6.25911 6.40797 6.43054 6.59826 6.82171 7.18816 7.25973 7.41602 7.70857 7.96847 7.98252 8.08849 8.12065 8.44181 8.96104 9.53952 11.02733 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.003267 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.888838 B = 8568.182784 C = 8848.218406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.620 5.620 3 C 0.104 3.896 4 C -0.119 4.119 5 C -0.152 4.152 6 H 0.130 0.870 7 C 0.534 3.466 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.106 3.894 11 C 0.048 3.952 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.040 3.960 23 C 0.119 3.881 24 C 0.544 3.456 25 O -0.519 6.519 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.099 0.901 37 H -0.008 1.008 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.028 0.972 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.898 14.303 5.223 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.355 5.355 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.176 4.176 6 H 0.148 0.852 7 C 0.321 3.679 8 O -0.417 6.417 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.081 4.081 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.003 4.003 24 C 0.330 3.670 25 O -0.394 6.394 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.117 0.883 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.251 13.955 4.610 22.663 hybrid contribution 0.558 -0.743 0.686 1.155 sum -16.693 13.212 5.296 21.938 Atomic orbital electron populations 1.21535 0.77709 1.02967 1.02110 1.47997 1.06569 1.07111 1.73816 1.22104 0.90147 0.87361 1.02288 1.22607 0.97469 0.92448 1.03202 1.22213 0.96271 1.00563 0.98590 0.85185 1.19664 0.82178 0.76706 0.89373 1.90715 1.59611 1.50547 1.40848 1.48174 1.04961 1.71709 1.08687 1.22213 0.91873 1.00711 0.86845 1.22427 0.96052 0.94611 0.95016 1.62091 1.11766 1.52273 0.99889 1.19725 0.88168 0.87111 0.98110 1.21087 1.04217 1.10742 1.18936 0.91831 1.25001 0.98327 0.95029 0.96215 1.69950 1.30385 1.15028 1.38273 0.86546 0.81348 0.77933 0.81482 1.20246 1.21369 1.20135 1.22404 0.93929 0.95755 0.96847 1.21791 0.95887 0.99375 0.83248 1.20035 0.87622 0.84446 0.74874 1.90732 1.78036 1.21076 1.49553 0.92462 0.90640 0.90988 0.89875 0.90736 0.88428 0.88489 0.90155 0.90173 0.95502 0.88300 0.99061 0.94997 0.92770 0.95397 0.89944 0.89394 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 10.96 59.85 0.66 1.47 16 2 N -0.62 -6.63 3.33 -180.26 -0.60 -7.23 16 3 C 0.10 0.76 7.35 -3.12 -0.02 0.74 16 4 C -0.12 -0.86 6.70 -25.10 -0.17 -1.02 16 5 C -0.15 -1.77 2.45 -91.76 -0.23 -2.00 16 6 H 0.13 1.35 6.34 -51.93 -0.33 1.03 16 7 C 0.53 7.98 6.81 -10.98 -0.07 7.91 16 8 O -0.54 -9.97 15.68 5.56 0.09 -9.88 16 9 N -0.60 -8.71 3.00 -172.18 -0.52 -9.23 16 10 C 0.11 1.39 6.51 -3.37 -0.02 1.37 16 11 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 12 N -0.53 -10.85 4.62 -235.48 -1.09 -11.94 16 13 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 14 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 15 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 23 C 0.12 1.81 6.61 -3.60 -0.02 1.78 16 24 C 0.54 7.77 6.71 -10.83 -0.07 7.70 16 25 O -0.52 -9.60 17.59 5.55 0.10 -9.50 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.64 7.89 -51.92 -0.41 0.23 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.82 5.54 -51.93 -0.29 0.53 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 38 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 42 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -35.20 346.36 -8.20 -43.40 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.71 Total: -3.05 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -0.40 Total: 11.77 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -1.47 Total: -53.85 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.38 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.20 -8.20 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.723 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds