Wall clock time and date at job start Tue Mar 31 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46761 * 124.34599 * 2 1 4 4 C 1.54487 * 105.46997 * 162.96012 * 3 2 1 5 5 C 1.54625 * 101.79968 * 25.39943 * 4 3 2 6 6 H 1.08994 * 110.48798 * 216.53980 * 5 4 3 7 7 C 1.50700 * 110.48470 * 93.89346 * 5 4 3 8 8 O 1.21279 * 120.00281 * 263.57936 * 7 5 4 9 9 N 1.34779 * 119.99582 * 83.58720 * 7 5 4 10 10 C 1.47073 * 120.88406 * 4.28650 * 9 7 5 11 11 C 1.53693 * 108.27885 * 128.75433 * 10 9 7 12 12 N 1.46900 * 109.25838 * 54.08277 * 11 10 9 13 13 C 1.46896 * 111.00507 * 172.60516 * 12 11 10 14 14 C 1.50701 * 109.47248 * 294.30786 * 13 12 11 15 15 H 1.07999 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00169 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00295 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47109 * 59.99357 * 18 16 14 20 20 H 1.48499 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47057 * 299.99840 * 18 16 14 22 22 C 1.46894 * 111.26757 * 296.75963 * 12 11 10 23 23 C 1.47089 * 120.87913 * 184.56364 * 9 7 5 24 24 C 1.34418 * 124.35264 * 179.97438 * 2 1 3 25 25 O 1.21285 * 124.93708 * 0.44057 * 24 2 1 26 26 H 1.08995 * 109.46981 * 90.00079 * 1 2 3 27 27 H 1.09004 * 109.46593 * 209.99700 * 1 2 3 28 28 H 1.08993 * 109.47343 * 329.99817 * 1 2 3 29 29 H 1.09007 * 110.24794 * 43.96636 * 3 2 1 30 30 H 1.08999 * 110.32298 * 282.00308 * 3 2 1 31 31 H 1.09009 * 110.96484 * 143.53413 * 4 3 2 32 32 H 1.08999 * 110.97129 * 267.25673 * 4 3 2 33 33 H 1.09005 * 109.63071 * 248.52515 * 10 9 7 34 34 H 1.09001 * 109.62959 * 9.10465 * 10 9 7 35 35 H 1.08994 * 109.65095 * 294.08075 * 11 10 9 36 36 H 1.09000 * 109.44597 * 173.95831 * 11 10 9 37 37 H 1.09004 * 109.46589 * 54.30287 * 13 12 11 38 38 H 1.08991 * 109.47473 * 174.30018 * 13 12 11 39 39 H 0.97000 * 119.99881 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.49151 * 303.13944 * 22 12 11 41 41 H 1.09000 * 109.51626 * 183.07405 * 22 12 11 42 42 H 1.08996 * 109.62666 * 350.89457 * 23 9 7 43 43 H 1.09003 * 109.62336 * 111.27999 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 0.4363 5 6 3.6905 -0.7380 0.0118 6 1 4.2331 -1.3454 0.7361 7 6 4.2855 -0.8979 -1.3636 8 8 3.5615 -0.9506 -2.3351 9 7 5.6222 -0.9825 -1.5138 10 6 6.5128 -1.0151 -0.3438 11 6 7.4601 -2.2163 -0.4924 12 7 8.1434 -2.1368 -1.7904 13 6 9.1853 -3.1665 -1.9009 14 6 10.2741 -2.8892 -0.8965 15 1 10.1997 -2.0335 -0.2419 16 6 11.3656 -3.7275 -0.8141 17 7 11.4564 -4.7694 -1.6116 18 14 12.7156 -3.3835 0.4303 19 1 12.1429 -3.4042 1.8003 20 1 13.7687 -4.4244 0.3187 21 1 13.3080 -2.0485 0.1616 22 6 7.1882 -2.2329 -2.9022 23 6 6.2294 -1.0386 -2.8523 24 6 2.2236 -1.1097 0.0005 25 8 1.7947 -2.2442 -0.0066 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.8982 1.9385 0.7100 30 1 2.3311 1.6442 -0.9998 31 1 4.4755 1.3011 -0.0960 32 1 3.8267 0.8458 1.5147 33 1 7.0912 -0.0923 -0.2980 34 1 5.9203 -1.1247 0.5645 35 1 6.8885 -3.1427 -0.4385 36 1 8.1986 -2.1974 0.3091 37 1 8.7500 -4.1462 -1.7038 38 1 9.6058 -3.1514 -2.9063 39 1 12.2245 -5.3589 -1.5539 40 1 6.6203 -3.1592 -2.8147 41 1 7.7290 -2.2259 -3.8485 42 1 5.4493 -1.1637 -3.6032 43 1 6.7781 -0.1165 -3.0444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:23 Heat of formation + Delta-G solvation = -73.858456 kcal Electronic energy + Delta-G solvation = -24519.504257 eV Core-core repulsion = 20984.982253 eV Total energy + Delta-G solvation = -3534.522004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21304 -40.54653 -38.88351 -37.54287 -36.04589 -34.55445 -33.89040 -32.12720 -30.11198 -28.99737 -27.84346 -27.07339 -24.73559 -24.25403 -23.29395 -22.11577 -20.86203 -19.89821 -18.68299 -18.48159 -17.80519 -17.48496 -16.78103 -16.54427 -16.34077 -16.08560 -16.00989 -15.48630 -15.32999 -14.80406 -14.76319 -14.70375 -14.27144 -14.07208 -13.79985 -13.56207 -13.53064 -13.23561 -13.02187 -12.77819 -12.59835 -12.50494 -12.44036 -12.37178 -12.20275 -12.11736 -11.76702 -11.30249 -11.08485 -10.89687 -10.59937 -9.83843 -9.76499 -9.09715 -8.18961 -6.29938 1.19187 1.41130 1.45331 1.48577 1.56222 1.90067 2.12097 2.42587 3.09413 3.13343 3.20892 3.39002 3.44337 3.81321 3.99292 4.02329 4.11742 4.20921 4.24102 4.34445 4.41111 4.43671 4.56468 4.60377 4.67280 4.71523 4.82214 4.82734 4.91962 4.94462 5.01841 5.05976 5.19353 5.21502 5.39386 5.51216 5.64484 5.97712 6.01977 6.17733 6.33280 6.53592 6.86085 6.93521 7.02306 7.40404 8.92492 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.003267 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.888838 B = 8568.182784 C = 8848.218406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.616 5.616 3 C 0.097 3.903 4 C -0.108 4.108 5 C -0.150 4.150 6 H 0.144 0.856 7 C 0.533 3.467 8 O -0.582 6.582 9 N -0.603 5.603 10 C 0.118 3.882 11 C 0.044 3.956 12 N -0.533 5.533 13 C 0.207 3.793 14 C -0.521 4.521 15 H 0.075 0.925 16 C -0.002 4.002 17 N -0.939 5.939 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.290 1.290 21 H -0.265 1.265 22 C 0.041 3.959 23 C 0.129 3.871 24 C 0.526 3.474 25 O -0.580 6.580 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.006 0.994 36 H 0.092 0.908 37 H -0.046 1.046 38 H 0.004 0.996 39 H 0.263 0.737 40 H 0.006 0.994 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 17.855 7.688 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.349 5.349 3 C -0.025 4.025 4 C -0.145 4.145 5 C -0.175 4.175 6 H 0.161 0.839 7 C 0.321 3.679 8 O -0.462 6.462 9 N -0.335 5.335 10 C -0.004 4.004 11 C -0.085 4.085 12 N -0.257 5.257 13 C 0.081 3.919 14 C -0.559 4.559 15 H 0.093 0.907 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.189 1.189 22 C -0.088 4.088 23 C 0.006 3.994 24 C 0.312 3.688 25 O -0.460 6.460 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.142 0.858 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.025 0.975 36 H 0.111 0.889 37 H -0.028 1.028 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.275 17.588 7.095 25.654 hybrid contribution 0.477 -1.854 -0.153 1.920 sum -16.798 15.734 6.942 24.040 Atomic orbital electron populations 1.21730 0.76687 1.04334 1.02243 1.48265 1.07634 1.07388 1.71572 1.22436 0.90060 0.86580 1.03402 1.22790 0.97651 0.88560 1.05526 1.22260 0.94435 1.04246 0.96511 0.83892 1.20239 0.81805 0.75467 0.90349 1.90698 1.60468 1.52387 1.42642 1.48241 1.05232 1.71365 1.08697 1.22284 0.91323 0.99182 0.87626 1.22529 0.96458 0.96272 0.93218 1.62048 1.12040 1.49713 1.01920 1.19385 0.89402 0.86784 0.96331 1.21440 1.04459 1.10914 1.19052 0.90691 1.25995 1.01083 0.94655 0.98252 1.70109 1.31293 1.16279 1.40311 0.85374 0.77821 0.77933 0.79132 1.18757 1.21596 1.18947 1.22447 0.93796 0.96396 0.96169 1.21643 0.95113 0.98556 0.84077 1.20605 0.89185 0.84430 0.74539 1.90688 1.79236 1.23464 1.52574 0.92978 0.92006 0.86888 0.85780 0.91167 0.87077 0.84924 0.87701 0.86456 0.97522 0.88939 1.02817 0.97793 0.92799 0.97562 0.89914 0.89753 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.96 127.77 1.40 2.76 16 2 N -0.62 -11.91 3.33 -842.80 -2.81 -14.72 16 3 C 0.10 1.03 7.35 86.84 0.64 1.67 16 4 C -0.11 -1.03 6.70 31.65 0.21 -0.82 16 5 C -0.15 -3.14 2.45 -11.53 -0.03 -3.17 16 6 H 0.14 2.55 6.34 -2.39 -0.02 2.53 16 7 C 0.53 15.19 6.81 87.66 0.60 15.78 16 8 O -0.58 -21.47 15.68 -3.03 -0.05 -21.51 16 9 N -0.60 -16.36 3.00 -817.04 -2.45 -18.81 16 10 C 0.12 2.72 6.51 86.50 0.56 3.29 16 11 C 0.04 1.53 5.47 86.54 0.47 2.00 16 12 N -0.53 -21.83 4.62 -898.92 -4.15 -25.98 16 13 C 0.21 10.86 4.72 85.56 0.40 11.26 16 14 C -0.52 -28.12 8.41 25.60 0.22 -27.91 16 15 H 0.08 3.80 7.13 -2.91 -0.02 3.78 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 17 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 18 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 22 C 0.04 1.50 5.62 86.38 0.49 1.99 16 23 C 0.13 3.79 6.61 86.35 0.57 4.36 16 24 C 0.53 14.62 6.71 87.92 0.59 15.21 16 25 O -0.58 -22.14 17.59 -3.05 -0.05 -22.19 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 1.10 7.93 -2.38 -0.02 1.08 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.86 7.89 -2.38 -0.02 0.84 16 32 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.12 1.89 5.54 -2.39 -0.01 1.87 16 35 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.09 3.33 6.67 -2.39 -0.02 3.32 16 37 H -0.05 -2.69 8.12 -2.39 -0.02 -2.71 16 38 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.08 2.96 7.99 -2.39 -0.02 2.94 16 42 H 0.08 2.59 7.04 -2.39 -0.02 2.57 16 43 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -82.07 346.36 0.38 -81.69 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.00 Total: 6.18 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 6.58 Total: 26.78 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -9.13 Total: -115.51 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.10 Total: -43.70 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -82.07 0.38 -81.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.832 kcal (2) G-P(sol) polarization free energy of solvation -82.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds