Wall clock time and date at job start Tue Mar 31 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46755 * 124.35202 * 2 1 4 4 C 1.54480 * 105.47562 * 162.96498 * 3 2 1 5 5 H 1.09005 * 110.97017 * 143.57110 * 4 3 2 6 6 C 1.50700 * 110.96698 * 267.29434 * 4 3 2 7 7 O 1.21283 * 120.00129 * 0.02562 * 6 4 3 8 8 N 1.34775 * 119.99859 * 179.97438 * 6 4 3 9 9 C 1.47081 * 120.88208 * 180.02562 * 8 6 4 10 10 C 1.53231 * 108.52526 * 128.79626 * 9 8 6 11 11 N 1.46902 * 109.36484 * 53.81477 * 10 9 8 12 12 C 1.46893 * 111.00211 * 172.76304 * 11 10 9 13 13 C 1.50703 * 109.47169 * 64.58187 * 12 11 10 14 14 H 1.08003 * 119.99766 * 4.84334 * 13 12 11 15 15 C 1.37884 * 119.99970 * 184.83548 * 13 12 11 16 16 N 1.31508 * 119.99820 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99746 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47060 * 90.00129 * 17 15 13 19 19 H 1.48501 * 109.46819 * 210.00205 * 17 15 13 20 20 H 1.48498 * 109.47133 * 330.00188 * 17 15 13 21 21 C 1.46903 * 111.26678 * 296.94060 * 11 10 9 22 22 C 1.47079 * 120.88330 * 359.97438 * 8 6 4 23 23 C 1.54626 * 101.76432 * 25.41306 * 4 3 2 24 24 C 1.34423 * 124.34556 * 179.97438 * 2 1 3 25 25 O 1.21276 * 124.94379 * 0.45855 * 24 2 1 26 26 H 1.08997 * 109.47417 * 89.99867 * 1 2 3 27 27 H 1.09010 * 109.47208 * 210.00201 * 1 2 3 28 28 H 1.08996 * 109.47155 * 329.99924 * 1 2 3 29 29 H 1.08993 * 110.24971 * 43.95936 * 3 2 1 30 30 H 1.09007 * 110.31676 * 282.00061 * 3 2 1 31 31 H 1.09007 * 109.62831 * 9.07996 * 9 8 6 32 32 H 1.09004 * 109.78810 * 248.59866 * 9 8 6 33 33 H 1.08998 * 109.49660 * 173.79237 * 10 9 8 34 34 H 1.09002 * 109.49375 * 293.84317 * 10 9 8 35 35 H 1.08998 * 109.47058 * 184.58551 * 12 11 10 36 36 H 1.08995 * 109.47129 * 304.58619 * 12 11 10 37 37 H 0.96999 * 119.99926 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47187 * 303.09827 * 21 11 10 39 39 H 1.09007 * 109.50808 * 183.04760 * 21 11 10 40 40 H 1.08998 * 109.62883 * 350.91392 * 22 8 6 41 41 H 1.09003 * 109.63147 * 111.49403 * 22 8 6 42 42 H 1.08999 * 110.48750 * 93.88599 * 23 4 3 43 43 H 1.09004 * 110.48807 * 216.52471 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4361 5 1 4.4754 1.3014 -0.0956 6 6 3.8744 0.8819 1.9272 7 8 2.9655 1.3077 2.6079 8 7 5.0395 0.5268 2.5043 9 6 5.2298 0.6482 3.9577 10 6 5.7492 -0.6899 4.4942 11 7 6.9476 -1.0842 3.7416 12 6 7.5749 -2.2723 4.3355 13 6 6.6377 -3.4467 4.2184 14 1 5.7065 -3.3430 3.6812 15 6 6.9692 -4.6536 4.7970 16 7 8.1029 -4.7797 5.4514 17 14 5.8079 -6.1095 4.6512 18 1 6.1393 -6.8867 3.4300 19 1 5.9524 -6.9794 5.8460 20 1 4.4089 -5.6196 4.5618 21 6 6.6370 -1.3057 2.3230 22 6 6.1539 0.0066 1.6977 23 6 3.6897 -0.7379 0.0109 24 6 2.2234 -1.1099 0.0005 25 8 1.7945 -2.2442 -0.0070 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.8982 1.9384 0.7098 30 1 2.3312 1.6440 -0.9999 31 1 4.2786 0.8889 4.4327 32 1 5.9545 1.4341 4.1706 33 1 6.0003 -0.5858 5.5497 34 1 4.9790 -1.4523 4.3771 35 1 8.5032 -2.4944 3.8093 36 1 7.7897 -2.0825 5.3870 37 1 8.3360 -5.6286 5.8587 38 1 5.8547 -2.0596 2.2357 39 1 7.5320 -1.6485 1.8036 40 1 5.8138 -0.1770 0.6785 41 1 6.9692 0.7301 1.6898 42 1 4.1197 -0.8534 -0.9840 43 1 4.2323 -1.3459 0.7348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:07 Heat of formation + Delta-G solvation = -50.076809 kcal Electronic energy + Delta-G solvation = -25086.455066 eV Core-core repulsion = 21552.964312 eV Total energy + Delta-G solvation = -3533.490754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.12120 -39.42050 -37.64097 -36.24751 -34.61471 -33.20136 -32.28166 -30.70980 -28.42143 -27.82680 -26.94130 -25.45985 -23.64223 -23.02881 -22.00712 -20.47270 -19.66702 -18.67562 -17.64354 -16.84146 -16.40225 -16.10158 -15.74958 -15.30029 -15.08172 -14.81446 -14.49757 -13.94327 -13.80719 -13.74804 -13.63712 -13.56917 -12.97513 -12.69471 -12.47798 -12.32984 -12.18982 -11.91978 -11.85343 -11.66188 -11.18393 -11.11471 -11.04039 -10.69780 -10.65918 -10.29666 -9.95918 -9.90173 -9.75997 -9.62697 -8.86898 -8.53174 -8.47704 -7.32153 -6.08302 -4.17746 2.49094 2.56112 2.87584 3.01803 3.26843 3.33952 3.39476 4.04860 4.15123 4.29289 4.38498 4.62384 4.81839 4.97976 5.09415 5.12924 5.21520 5.25107 5.31344 5.34082 5.40228 5.46984 5.54688 5.56932 5.60612 5.66482 5.82061 5.93056 6.02683 6.32881 6.34613 6.53528 6.64328 6.68161 6.94636 7.15061 7.44685 7.46707 7.82623 7.91154 8.06842 8.12205 8.16177 8.20981 8.91807 9.50463 10.96901 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.004885 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.329241 B = 5730.646862 C = 6785.375169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.620 5.620 3 C 0.119 3.881 4 C -0.125 4.125 5 H 0.125 0.875 6 C 0.520 3.480 7 O -0.543 6.543 8 N -0.601 5.601 9 C 0.115 3.885 10 C 0.049 3.951 11 N -0.539 5.539 12 C 0.188 3.812 13 C -0.553 4.553 14 H 0.056 0.944 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.046 3.954 22 C 0.103 3.897 23 C -0.151 4.151 24 C 0.517 3.483 25 O -0.527 6.527 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.263 0.737 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 14.788 -12.475 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.355 5.355 3 C -0.004 4.004 4 C -0.147 4.147 5 H 0.143 0.857 6 C 0.307 3.693 7 O -0.421 6.421 8 N -0.333 5.333 9 C -0.007 4.007 10 C -0.080 4.080 11 N -0.264 5.264 12 C 0.063 3.937 13 C -0.592 4.592 14 H 0.074 0.926 15 C -0.135 4.135 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.083 4.083 22 C -0.020 4.020 23 C -0.191 4.191 24 C 0.305 3.695 25 O -0.403 6.403 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.862 14.668 -11.960 20.494 hybrid contribution -1.021 -1.655 -0.041 1.945 sum -8.884 13.013 -12.001 19.806 Atomic orbital electron populations 1.21514 0.77891 1.03365 1.01522 1.48071 1.06623 1.07149 1.73657 1.21985 0.88596 0.87955 1.01906 1.22310 0.99640 0.98024 0.94713 0.85745 1.20142 0.82033 0.77692 0.89412 1.90674 1.40261 1.46648 1.64521 1.48133 1.13371 1.62958 1.08883 1.21856 1.01409 0.98601 0.78813 1.22245 0.93167 0.94329 0.98251 1.62497 1.24666 1.38159 1.01031 1.19767 0.94144 0.84353 0.95473 1.21723 1.05676 0.96661 1.35134 0.92602 1.24929 0.95088 0.98731 0.94751 1.69931 1.22306 1.25576 1.34973 0.86678 0.81508 0.82698 0.77717 1.20489 1.21062 1.19903 1.22257 1.00700 0.93981 0.91391 1.22136 0.88668 0.97041 0.94160 1.22517 0.95845 0.95173 1.05583 1.20788 0.89056 0.84445 0.75228 1.90746 1.78489 1.21053 1.50051 0.92672 0.90772 0.90908 0.88580 0.90288 0.89541 0.91133 0.90261 0.93922 0.95165 0.94619 0.92732 0.93762 0.90086 0.90011 0.90655 0.86417 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 10.96 59.85 0.66 1.63 16 2 N -0.62 -7.35 3.33 -180.30 -0.60 -7.95 16 3 C 0.12 1.08 6.68 -3.13 -0.02 1.06 16 4 C -0.13 -1.20 2.52 -90.14 -0.23 -1.43 16 5 H 0.12 0.75 7.86 -51.93 -0.41 0.34 16 6 C 0.52 7.20 7.02 -10.99 -0.08 7.12 16 7 O -0.54 -9.22 14.98 5.55 0.08 -9.14 16 8 N -0.60 -8.50 3.00 -172.49 -0.52 -9.02 16 9 C 0.12 1.78 6.60 -3.61 -0.02 1.76 16 10 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 11 N -0.54 -10.64 4.83 -235.80 -1.14 -11.78 16 12 C 0.19 4.60 5.11 -4.98 -0.03 4.58 16 13 C -0.55 -14.85 7.76 -34.44 -0.27 -15.12 16 14 H 0.06 1.52 5.88 -52.48 -0.31 1.21 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 16 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.05 0.78 5.14 -3.72 -0.02 0.76 16 22 C 0.10 1.28 5.68 -3.63 -0.02 1.26 16 23 C -0.15 -1.67 5.13 -26.74 -0.14 -1.80 16 24 C 0.52 7.56 8.02 -10.86 -0.09 7.48 16 25 O -0.53 -10.03 17.59 5.56 0.10 -9.93 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.85 7.93 -51.92 -0.41 0.43 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.95 7.02 -51.93 -0.36 0.59 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 34 H 0.04 0.92 7.09 -51.93 -0.37 0.55 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.04 0.86 6.34 -51.93 -0.33 0.53 16 39 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 40 H 0.08 0.77 4.81 -51.93 -0.25 0.52 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.11 1.49 6.31 -51.93 -0.33 1.16 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -34.33 339.05 -8.11 -42.44 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.49 Total: -1.41 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -0.37 Total: 9.99 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -1.52 Total: -53.76 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.33 -8.11 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.636 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds