Wall clock time and date at job start Tue Mar 31 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46755 * 124.35202 * 2 1 4 4 C 1.54480 * 105.47562 * 162.96498 * 3 2 1 5 5 H 1.09005 * 110.97017 * 143.57110 * 4 3 2 6 6 C 1.50700 * 110.96698 * 267.29434 * 4 3 2 7 7 O 1.21283 * 120.00129 * 0.02562 * 6 4 3 8 8 N 1.34775 * 119.99859 * 179.97438 * 6 4 3 9 9 C 1.47081 * 120.88208 * 180.02562 * 8 6 4 10 10 C 1.53231 * 108.52526 * 128.79626 * 9 8 6 11 11 N 1.46902 * 109.36484 * 53.81477 * 10 9 8 12 12 C 1.46893 * 111.00211 * 172.76304 * 11 10 9 13 13 C 1.50703 * 109.47169 * 64.58187 * 12 11 10 14 14 H 1.08003 * 119.99766 * 4.84334 * 13 12 11 15 15 C 1.37884 * 119.99970 * 184.83548 * 13 12 11 16 16 N 1.31508 * 119.99820 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99746 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47060 * 90.00129 * 17 15 13 19 19 H 1.48501 * 109.46819 * 210.00205 * 17 15 13 20 20 H 1.48498 * 109.47133 * 330.00188 * 17 15 13 21 21 C 1.46903 * 111.26678 * 296.94060 * 11 10 9 22 22 C 1.47079 * 120.88330 * 359.97438 * 8 6 4 23 23 C 1.54626 * 101.76432 * 25.41306 * 4 3 2 24 24 C 1.34423 * 124.34556 * 179.97438 * 2 1 3 25 25 O 1.21276 * 124.94379 * 0.45855 * 24 2 1 26 26 H 1.08997 * 109.47417 * 89.99867 * 1 2 3 27 27 H 1.09010 * 109.47208 * 210.00201 * 1 2 3 28 28 H 1.08996 * 109.47155 * 329.99924 * 1 2 3 29 29 H 1.08993 * 110.24971 * 43.95936 * 3 2 1 30 30 H 1.09007 * 110.31676 * 282.00061 * 3 2 1 31 31 H 1.09007 * 109.62831 * 9.07996 * 9 8 6 32 32 H 1.09004 * 109.78810 * 248.59866 * 9 8 6 33 33 H 1.08998 * 109.49660 * 173.79237 * 10 9 8 34 34 H 1.09002 * 109.49375 * 293.84317 * 10 9 8 35 35 H 1.08998 * 109.47058 * 184.58551 * 12 11 10 36 36 H 1.08995 * 109.47129 * 304.58619 * 12 11 10 37 37 H 0.96999 * 119.99926 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47187 * 303.09827 * 21 11 10 39 39 H 1.09007 * 109.50808 * 183.04760 * 21 11 10 40 40 H 1.08998 * 109.62883 * 350.91392 * 22 8 6 41 41 H 1.09003 * 109.63147 * 111.49403 * 22 8 6 42 42 H 1.08999 * 110.48750 * 93.88599 * 23 4 3 43 43 H 1.09004 * 110.48807 * 216.52471 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4361 5 1 4.4754 1.3014 -0.0956 6 6 3.8744 0.8819 1.9272 7 8 2.9655 1.3077 2.6079 8 7 5.0395 0.5268 2.5043 9 6 5.2298 0.6482 3.9577 10 6 5.7492 -0.6899 4.4942 11 7 6.9476 -1.0842 3.7416 12 6 7.5749 -2.2723 4.3355 13 6 6.6377 -3.4467 4.2184 14 1 5.7065 -3.3430 3.6812 15 6 6.9692 -4.6536 4.7970 16 7 8.1029 -4.7797 5.4514 17 14 5.8079 -6.1095 4.6512 18 1 6.1393 -6.8867 3.4300 19 1 5.9524 -6.9794 5.8460 20 1 4.4089 -5.6196 4.5618 21 6 6.6370 -1.3057 2.3230 22 6 6.1539 0.0066 1.6977 23 6 3.6897 -0.7379 0.0109 24 6 2.2234 -1.1099 0.0005 25 8 1.7945 -2.2442 -0.0070 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.8982 1.9384 0.7098 30 1 2.3312 1.6440 -0.9999 31 1 4.2786 0.8889 4.4327 32 1 5.9545 1.4341 4.1706 33 1 6.0003 -0.5858 5.5497 34 1 4.9790 -1.4523 4.3771 35 1 8.5032 -2.4944 3.8093 36 1 7.7897 -2.0825 5.3870 37 1 8.3360 -5.6286 5.8587 38 1 5.8547 -2.0596 2.2357 39 1 7.5320 -1.6485 1.8036 40 1 5.8138 -0.1770 0.6785 41 1 6.9692 0.7301 1.6898 42 1 4.1197 -0.8534 -0.9840 43 1 4.2323 -1.3459 0.7348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:07 Heat of formation + Delta-G solvation = -76.433204 kcal Electronic energy + Delta-G solvation = -25087.597965 eV Core-core repulsion = 21552.964312 eV Total energy + Delta-G solvation = -3534.633654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11717 -40.58309 -39.03422 -37.34629 -36.09604 -34.50612 -33.90255 -31.98080 -29.99525 -28.76390 -27.90201 -27.13400 -24.89060 -24.43400 -23.42064 -21.79800 -20.68943 -19.91427 -18.74562 -18.32393 -17.77979 -17.28697 -16.81361 -16.73048 -16.32592 -16.17322 -15.98217 -15.54577 -15.20804 -14.83284 -14.65566 -14.62021 -14.47648 -13.78294 -13.63018 -13.45399 -13.33844 -13.18539 -12.97641 -12.95943 -12.86327 -12.52165 -12.49639 -12.45209 -12.18381 -11.95697 -11.85058 -11.63578 -10.99856 -10.80467 -10.64587 -9.77587 -9.75135 -9.07186 -8.21250 -6.39296 1.29363 1.31851 1.41065 1.43762 1.51026 1.93258 2.07448 2.31337 3.04305 3.19435 3.28645 3.34338 3.38695 3.83232 4.03548 4.10556 4.26769 4.29571 4.32685 4.36401 4.45184 4.54612 4.61699 4.62859 4.67867 4.73250 4.79043 4.80726 4.85795 4.90452 5.04936 5.19421 5.23232 5.30378 5.46448 5.49028 5.70379 5.97146 6.02757 6.14130 6.42488 6.45342 6.81277 7.04509 7.08442 7.32227 8.80913 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.004885 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.329241 B = 5730.646862 C = 6785.375169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.620 5.620 3 C 0.117 3.883 4 C -0.113 4.113 5 H 0.180 0.820 6 C 0.513 3.487 7 O -0.580 6.580 8 N -0.607 5.607 9 C 0.127 3.873 10 C 0.054 3.946 11 N -0.531 5.531 12 C 0.201 3.799 13 C -0.556 4.556 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.944 3.056 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.282 1.282 21 C 0.042 3.958 22 C 0.114 3.886 23 C -0.145 4.145 24 C 0.498 3.502 25 O -0.590 6.590 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.005 0.995 35 H 0.015 0.985 36 H 0.009 0.991 37 H 0.266 0.734 38 H 0.013 0.987 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.160 0.840 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 16.981 -15.104 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.353 5.353 3 C -0.005 4.005 4 C -0.134 4.134 5 H 0.197 0.803 6 C 0.302 3.698 7 O -0.460 6.460 8 N -0.339 5.339 9 C 0.004 3.996 10 C -0.075 4.075 11 N -0.255 5.255 12 C 0.074 3.926 13 C -0.595 4.595 14 H 0.064 0.936 15 C -0.179 4.179 16 N -0.559 5.559 17 Si 0.770 3.230 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.208 1.208 21 C -0.087 4.087 22 C -0.008 4.008 23 C -0.185 4.185 24 C 0.287 3.713 25 O -0.471 6.471 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.023 0.977 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.178 0.822 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.774 16.917 -14.611 23.667 hybrid contribution -1.099 -2.289 0.809 2.665 sum -8.873 14.628 -13.802 21.982 Atomic orbital electron populations 1.21659 0.77306 1.03069 1.02887 1.48337 1.07494 1.07613 1.71888 1.22290 0.87420 0.86428 1.04336 1.22471 1.01841 0.97526 0.91546 0.80306 1.20980 0.80944 0.76500 0.91347 1.90664 1.41220 1.48221 1.65913 1.48252 1.14297 1.63044 1.08282 1.21619 1.01304 0.96548 0.80166 1.22201 0.91591 0.95386 0.98326 1.62444 1.25041 1.35420 1.02589 1.19431 0.93530 0.85600 0.94038 1.21935 1.05501 0.97608 1.34469 0.93578 1.25627 0.96427 1.01173 0.94684 1.70018 1.23657 1.26347 1.35874 0.85776 0.79068 0.79967 0.78182 1.19546 1.20197 1.20761 1.22387 1.00143 0.96404 0.89742 1.22208 0.88908 0.94606 0.95028 1.22553 0.93172 0.95483 1.07269 1.21517 0.91015 0.84165 0.74640 1.90703 1.79784 1.23451 1.53143 0.90471 0.93340 0.88929 0.89276 0.85557 0.90272 0.88985 0.90990 0.97664 0.96703 0.97298 0.92468 0.96821 0.89551 0.86071 0.88101 0.82213 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 10.96 127.77 1.40 3.11 16 2 N -0.62 -13.43 3.33 -842.93 -2.81 -16.24 16 3 C 0.12 1.62 6.68 86.83 0.58 2.20 16 4 C -0.11 -1.65 2.52 -10.48 -0.03 -1.67 16 5 H 0.18 0.77 7.86 -2.38 -0.02 0.75 16 6 C 0.51 12.86 7.02 87.66 0.62 13.48 16 7 O -0.58 -18.93 14.98 -3.04 -0.05 -18.98 16 8 N -0.61 -15.77 3.00 -818.03 -2.45 -18.23 16 9 C 0.13 3.80 6.60 86.35 0.57 4.37 16 10 C 0.05 2.09 5.24 86.38 0.45 2.54 16 11 N -0.53 -21.15 4.83 -899.94 -4.35 -25.50 16 12 C 0.20 10.17 5.11 85.56 0.44 10.60 16 13 C -0.56 -30.83 7.76 25.60 0.20 -30.63 16 14 H 0.05 2.61 5.88 -2.91 -0.02 2.59 16 15 C 0.02 1.20 5.46 84.66 0.46 1.66 16 16 N -0.92 -54.26 13.29 21.45 0.28 -53.98 16 17 Si 0.94 45.47 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 21 C 0.04 1.40 5.14 86.37 0.44 1.85 16 22 C 0.11 2.45 5.68 86.33 0.49 2.94 16 23 C -0.14 -2.74 5.13 30.59 0.16 -2.59 16 24 C 0.50 14.08 8.02 87.90 0.71 14.79 16 25 O -0.59 -23.10 17.59 -3.02 -0.05 -23.15 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.14 7.93 -2.38 -0.02 1.12 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.45 7.02 -2.39 -0.02 1.43 16 30 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 2.51 7.06 -2.38 -0.02 2.50 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.80 8.06 -2.39 -0.02 2.78 16 34 H 0.00 0.23 7.09 -2.39 -0.02 0.21 16 35 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.01 0.54 6.34 -2.39 -0.02 0.52 16 39 H 0.09 2.76 8.11 -2.38 -0.02 2.74 16 40 H 0.12 1.67 4.81 -2.39 -0.01 1.65 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.09 2.20 6.31 -2.39 -0.02 2.19 16 Total: -1.00 -80.59 339.05 0.10 -80.49 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.01 Total: 5.44 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.49 Total: 22.64 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -9.33 Total: -113.95 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.10 Total: -42.13 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -80.59 0.10 -80.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.060 kcal (2) G-P(sol) polarization free energy of solvation -80.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds