Wall clock time and date at job start Tue Mar 31 2020 03:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99969 * 2 1 4 4 O 1.21280 * 119.99895 * 354.92133 * 3 2 1 5 5 C 1.50704 * 119.99539 * 174.91798 * 3 2 1 6 6 C 1.50691 * 115.55083 * 294.04769 * 5 3 2 7 7 O 1.21283 * 120.00219 * 110.24207 * 6 5 3 8 8 N 1.34774 * 120.00430 * 290.23939 * 6 5 3 9 9 C 1.47080 * 120.88618 * 174.64314 * 8 6 5 10 10 C 1.53239 * 108.52217 * 231.21368 * 9 8 6 11 11 N 1.46901 * 109.33598 * 306.16446 * 10 9 8 12 12 C 1.46907 * 110.99934 * 187.25411 * 11 10 9 13 13 C 1.50699 * 109.47218 * 170.00204 * 12 11 10 14 14 H 1.08004 * 119.99942 * 0.02562 * 13 12 11 15 15 C 1.37866 * 120.00130 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00395 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00280 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47397 * 89.99934 * 17 15 13 19 19 H 1.48500 * 109.47060 * 210.00374 * 17 15 13 20 20 H 1.48504 * 109.46860 * 329.99909 * 17 15 13 21 21 C 1.46901 * 111.26935 * 63.10877 * 11 10 9 22 22 C 1.47084 * 120.87749 * 354.67297 * 8 6 5 23 23 C 1.53007 * 117.49675 * 79.72098 * 5 3 2 24 24 C 1.53004 * 117.49365 * 148.37797 * 5 3 2 25 25 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46926 * 300.00087 * 1 2 3 27 27 H 1.09010 * 109.46909 * 59.99639 * 1 2 3 28 28 H 0.97002 * 119.99578 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.62740 * 111.49713 * 9 8 6 30 30 H 1.09000 * 109.78394 * 351.01462 * 9 8 6 31 31 H 1.09000 * 109.49038 * 186.21357 * 10 9 8 32 32 H 1.08990 * 109.52090 * 66.13814 * 10 9 8 33 33 H 1.08995 * 109.47459 * 290.00394 * 12 11 10 34 34 H 1.08996 * 109.46710 * 50.00303 * 12 11 10 35 35 H 0.97000 * 120.00628 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.49252 * 56.85250 * 21 11 10 37 37 H 1.09004 * 109.49548 * 176.92944 * 21 11 10 38 38 H 1.09007 * 109.62561 * 248.49483 * 22 8 6 39 39 H 1.08999 * 109.62746 * 8.88067 * 22 8 6 40 40 H 1.08994 * 117.49801 * 214.99824 * 23 5 3 41 41 H 1.09000 * 117.49449 * 0.02562 * 23 5 3 42 42 H 1.08999 * 117.49959 * 359.97438 * 24 5 3 43 43 H 1.09000 * 117.49573 * 144.97225 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5361 2.2154 -0.0930 5 6 3.6415 1.1697 0.1156 6 6 4.1933 0.6722 1.4267 7 8 4.7826 -0.3868 1.4739 8 7 4.0321 1.4041 2.5468 9 6 4.4584 0.8855 3.8555 10 6 3.2903 1.0234 4.8377 11 7 2.8220 2.4157 4.8441 12 6 1.8187 2.6289 5.8959 13 6 1.5437 4.1039 6.0363 14 1 2.0621 4.8122 5.4068 15 6 0.6306 4.5493 6.9682 16 7 -0.0003 3.6870 7.7350 17 14 0.2891 6.3777 7.1418 18 1 -0.8224 6.7620 6.2352 19 1 -0.0902 6.6793 8.5455 20 1 1.5087 7.1452 6.7828 21 6 2.2974 2.8075 3.5291 22 6 3.4246 2.7426 2.4931 23 6 4.4479 0.8697 -1.1497 24 6 4.4024 2.2939 -0.5902 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 5.3109 1.4603 4.2171 30 1 4.7372 -0.1642 3.7633 31 1 3.6221 0.7468 5.8385 32 1 2.4763 0.3673 4.5300 33 1 0.8973 2.1113 5.6294 34 1 2.1948 2.2378 6.8412 35 1 -0.6431 4.0002 8.3905 36 1 1.4972 2.1265 3.2390 37 1 1.9089 3.8246 3.5807 38 1 4.1778 3.4960 2.7239 39 1 3.0209 2.9217 1.4966 40 1 5.3775 0.3126 -1.0337 41 1 3.8915 0.6711 -2.0657 42 1 3.8162 3.0314 -1.1385 43 1 5.3019 2.6740 -0.1060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:00 Heat of formation + Delta-G solvation = -29.090932 kcal Electronic energy + Delta-G solvation = -25047.932242 eV Core-core repulsion = 21515.351504 eV Total energy + Delta-G solvation = -3532.580739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.98235 -39.22747 -37.71064 -36.17508 -34.76963 -34.39394 -32.41225 -30.83492 -28.42750 -27.72167 -25.89531 -24.42949 -23.29985 -22.65360 -22.20464 -21.26834 -20.12281 -19.07867 -17.78303 -16.44526 -16.36548 -16.16829 -16.01786 -15.23384 -14.98912 -14.74009 -14.58543 -14.36316 -14.02700 -13.85673 -13.60786 -13.14640 -12.93336 -12.80257 -12.47110 -12.23869 -11.95230 -11.90028 -11.35969 -11.27888 -11.11503 -10.96272 -10.81787 -10.72888 -10.62852 -10.53476 -10.14466 -9.87269 -9.67222 -9.32517 -9.27586 -8.55234 -8.44942 -7.33839 -6.05614 -4.07463 2.18957 2.50876 2.85151 2.95056 3.31020 3.37221 3.41312 3.52883 4.29212 4.38769 4.40139 4.50977 4.62293 4.82360 5.03828 5.24304 5.29664 5.33109 5.34811 5.37951 5.40997 5.54314 5.57287 5.65125 5.67501 5.77348 5.80539 5.88116 6.00942 6.16426 6.24353 6.45128 6.50470 6.65156 7.21101 7.21208 7.27569 7.44054 7.74734 7.96929 8.00879 8.08791 8.11958 8.47624 8.99597 9.57176 11.05264 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.004331 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.659929 B = 6463.850641 C = 6884.744573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.558 3.442 4 O -0.520 6.520 5 C -0.196 4.196 6 C 0.556 3.444 7 O -0.542 6.542 8 N -0.595 5.595 9 C 0.118 3.882 10 C 0.041 3.959 11 N -0.535 5.535 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.056 3.944 22 C 0.101 3.899 23 C -0.130 4.130 24 C -0.130 4.130 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.405 0.595 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.025 0.975 33 H -0.010 1.010 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.022 0.978 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.383 -7.638 -17.141 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.343 3.657 4 O -0.395 6.395 5 C -0.202 4.202 6 C 0.342 3.658 7 O -0.420 6.420 8 N -0.327 5.327 9 C -0.005 4.005 10 C -0.088 4.088 11 N -0.261 5.261 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.073 4.073 22 C -0.022 4.022 23 C -0.167 4.167 24 C -0.168 4.168 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.482 -7.138 -16.872 19.432 hybrid contribution -0.959 0.016 0.236 0.987 sum 5.523 -7.122 -16.636 18.920 Atomic orbital electron populations 1.21604 0.78877 1.02497 1.02718 1.45707 1.07998 1.08663 1.75512 1.19033 0.86817 0.83937 0.75939 1.90742 1.69144 1.31241 1.48381 1.21435 0.92834 1.10820 0.95131 1.18996 0.79466 0.83889 0.83478 1.90677 1.42795 1.22964 1.85579 1.48188 1.59675 1.18049 1.06786 1.21815 0.97547 1.00028 0.81065 1.22401 0.96029 0.91443 0.98952 1.62108 1.41324 1.17932 1.04687 1.19721 0.87453 0.97277 0.88606 1.21133 1.22434 0.91775 1.19398 0.91787 1.24982 0.95894 0.98001 0.95632 1.69955 1.27291 1.33939 1.22603 0.86498 0.78616 0.85106 0.77224 1.20695 1.21254 1.19702 1.22254 0.93756 1.02617 0.88704 1.22217 0.96516 0.82436 1.01000 1.23095 1.01221 0.98869 0.93538 1.23137 1.01042 0.91810 1.00768 0.90468 0.91772 0.91937 0.76093 0.90615 0.89425 0.89901 0.95718 0.99196 0.95010 0.92888 0.96019 0.88417 0.90529 0.88804 0.86873 0.87549 0.86673 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.71 59.85 0.64 1.48 16 2 N -0.73 -8.06 5.71 -67.07 -0.38 -8.44 16 3 C 0.56 7.49 6.46 -10.98 -0.07 7.42 16 4 O -0.52 -8.45 15.52 5.56 0.09 -8.37 16 5 C -0.20 -2.38 1.14 -156.81 -0.18 -2.56 16 6 C 0.56 8.21 6.91 -10.99 -0.08 8.14 16 7 O -0.54 -9.02 16.29 5.55 0.09 -8.93 16 8 N -0.60 -9.26 3.01 -172.47 -0.52 -9.78 16 9 C 0.12 1.83 6.57 -3.60 -0.02 1.81 16 10 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 11 N -0.54 -11.39 4.62 -235.76 -1.09 -12.48 16 12 C 0.19 5.01 4.72 -4.97 -0.02 4.99 16 13 C -0.51 -14.10 8.41 -34.44 -0.29 -14.38 16 14 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.06 1.10 5.46 -3.70 -0.02 1.08 16 22 C 0.10 1.61 6.29 -3.60 -0.02 1.59 16 23 C -0.13 -1.18 9.77 -26.69 -0.26 -1.44 16 24 C -0.13 -1.29 8.96 -26.69 -0.24 -1.53 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.41 3.78 8.83 -40.82 -0.36 3.42 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.31 7.11 -51.93 -0.37 0.94 16 31 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 34 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 2.07 6.67 -51.93 -0.35 1.72 16 38 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 39 H 0.09 1.44 4.20 -51.93 -0.22 1.22 16 40 H 0.11 1.02 8.07 -51.93 -0.42 0.60 16 41 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.11 1.11 8.00 -51.93 -0.42 0.69 16 43 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -32.91 351.46 -8.18 -41.08 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.69 Total: 2.15 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -0.68 Total: 8.80 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -1.26 Total: -56.51 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.18 Total: -17.30 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.91 -8.18 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.993 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds