Wall clock time and date at job start Tue Mar 31 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99969 * 2 1 4 4 O 1.21280 * 119.99895 * 354.92133 * 3 2 1 5 5 C 1.50704 * 119.99539 * 174.91798 * 3 2 1 6 6 C 1.50691 * 115.55083 * 294.04769 * 5 3 2 7 7 O 1.21283 * 120.00219 * 110.24207 * 6 5 3 8 8 N 1.34774 * 120.00430 * 290.23939 * 6 5 3 9 9 C 1.47080 * 120.88618 * 174.64314 * 8 6 5 10 10 C 1.53239 * 108.52217 * 231.21368 * 9 8 6 11 11 N 1.46901 * 109.33598 * 306.16446 * 10 9 8 12 12 C 1.46907 * 110.99934 * 187.25411 * 11 10 9 13 13 C 1.50699 * 109.47218 * 170.00204 * 12 11 10 14 14 H 1.08004 * 119.99942 * 0.02562 * 13 12 11 15 15 C 1.37866 * 120.00130 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00395 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00280 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47397 * 89.99934 * 17 15 13 19 19 H 1.48500 * 109.47060 * 210.00374 * 17 15 13 20 20 H 1.48504 * 109.46860 * 329.99909 * 17 15 13 21 21 C 1.46901 * 111.26935 * 63.10877 * 11 10 9 22 22 C 1.47084 * 120.87749 * 354.67297 * 8 6 5 23 23 C 1.53007 * 117.49675 * 79.72098 * 5 3 2 24 24 C 1.53004 * 117.49365 * 148.37797 * 5 3 2 25 25 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46926 * 300.00087 * 1 2 3 27 27 H 1.09010 * 109.46909 * 59.99639 * 1 2 3 28 28 H 0.97002 * 119.99578 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.62740 * 111.49713 * 9 8 6 30 30 H 1.09000 * 109.78394 * 351.01462 * 9 8 6 31 31 H 1.09000 * 109.49038 * 186.21357 * 10 9 8 32 32 H 1.08990 * 109.52090 * 66.13814 * 10 9 8 33 33 H 1.08995 * 109.47459 * 290.00394 * 12 11 10 34 34 H 1.08996 * 109.46710 * 50.00303 * 12 11 10 35 35 H 0.97000 * 120.00628 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.49252 * 56.85250 * 21 11 10 37 37 H 1.09004 * 109.49548 * 176.92944 * 21 11 10 38 38 H 1.09007 * 109.62561 * 248.49483 * 22 8 6 39 39 H 1.08999 * 109.62746 * 8.88067 * 22 8 6 40 40 H 1.08994 * 117.49801 * 214.99824 * 23 5 3 41 41 H 1.09000 * 117.49449 * 0.02562 * 23 5 3 42 42 H 1.08999 * 117.49959 * 359.97438 * 24 5 3 43 43 H 1.09000 * 117.49573 * 144.97225 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5361 2.2154 -0.0930 5 6 3.6415 1.1697 0.1156 6 6 4.1933 0.6722 1.4267 7 8 4.7826 -0.3868 1.4739 8 7 4.0321 1.4041 2.5468 9 6 4.4584 0.8855 3.8555 10 6 3.2903 1.0234 4.8377 11 7 2.8220 2.4157 4.8441 12 6 1.8187 2.6289 5.8959 13 6 1.5437 4.1039 6.0363 14 1 2.0621 4.8122 5.4068 15 6 0.6306 4.5493 6.9682 16 7 -0.0003 3.6870 7.7350 17 14 0.2891 6.3777 7.1418 18 1 -0.8224 6.7620 6.2352 19 1 -0.0902 6.6793 8.5455 20 1 1.5087 7.1452 6.7828 21 6 2.2974 2.8075 3.5291 22 6 3.4246 2.7426 2.4931 23 6 4.4479 0.8697 -1.1497 24 6 4.4024 2.2939 -0.5902 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 5.3109 1.4603 4.2171 30 1 4.7372 -0.1642 3.7633 31 1 3.6221 0.7468 5.8385 32 1 2.4763 0.3673 4.5300 33 1 0.8973 2.1113 5.6294 34 1 2.1948 2.2378 6.8412 35 1 -0.6431 4.0002 8.3905 36 1 1.4972 2.1265 3.2390 37 1 1.9089 3.8246 3.5807 38 1 4.1778 3.4960 2.7239 39 1 3.0209 2.9217 1.4966 40 1 5.3775 0.3126 -1.0337 41 1 3.8915 0.6711 -2.0657 42 1 3.8162 3.0314 -1.1385 43 1 5.3019 2.6740 -0.1060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:57 Heat of formation + Delta-G solvation = -53.759320 kcal Electronic energy + Delta-G solvation = -25049.001944 eV Core-core repulsion = 21515.351504 eV Total energy + Delta-G solvation = -3533.650440 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.06802 -40.41250 -39.14824 -37.11805 -36.05718 -35.71110 -34.41872 -32.27747 -30.14145 -28.69941 -27.53103 -25.66125 -24.73223 -23.80745 -23.43861 -22.66757 -21.41667 -20.21012 -18.99338 -18.52156 -17.57937 -17.21534 -17.05340 -16.68716 -16.32667 -16.09319 -16.00493 -15.55215 -15.53687 -15.36514 -15.04310 -14.35285 -14.14519 -14.04406 -13.88200 -13.60579 -13.22157 -13.09759 -12.81253 -12.66300 -12.58920 -12.44802 -12.39489 -12.26485 -12.14776 -11.83251 -11.68521 -11.31307 -11.16143 -10.83183 -10.63965 -10.27273 -9.88477 -9.14196 -8.22377 -6.32683 1.10120 1.41768 1.42685 1.43842 1.54402 1.75825 2.03858 2.39549 2.63930 3.09084 3.15834 3.23186 3.53935 3.68384 3.76248 3.89641 3.96784 4.14078 4.22249 4.33389 4.34079 4.48038 4.52167 4.58423 4.64950 4.66599 4.79454 4.83769 4.85959 4.87079 4.94001 5.10178 5.11937 5.17778 5.27061 5.33469 5.61306 5.98924 6.12237 6.26470 6.31755 6.51208 6.82200 6.89570 7.01793 7.37271 8.89043 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.004331 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.659929 B = 6463.850641 C = 6884.744573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.721 5.721 3 C 0.554 3.446 4 O -0.555 6.555 5 C -0.217 4.217 6 C 0.560 3.440 7 O -0.559 6.559 8 N -0.602 5.602 9 C 0.126 3.874 10 C 0.042 3.958 11 N -0.535 5.535 12 C 0.209 3.791 13 C -0.524 4.524 14 H 0.067 0.933 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.061 3.939 22 C 0.118 3.882 23 C -0.105 4.105 24 C -0.124 4.124 25 H 0.110 0.890 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.415 0.585 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.013 0.987 33 H -0.044 1.044 34 H 0.010 0.990 35 H 0.265 0.735 36 H 0.002 0.998 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -7.253 -18.832 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.372 5.372 3 C 0.339 3.661 4 O -0.434 6.434 5 C -0.224 4.224 6 C 0.348 3.652 7 O -0.438 6.438 8 N -0.333 5.333 9 C 0.004 3.996 10 C -0.087 4.087 11 N -0.260 5.260 12 C 0.083 3.917 13 C -0.562 4.562 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.186 1.186 21 C -0.068 4.068 22 C -0.005 4.005 23 C -0.143 4.143 24 C -0.161 4.161 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.250 0.750 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.031 0.969 33 H -0.026 1.026 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.790 -6.794 -18.589 21.270 hybrid contribution -1.376 -0.211 0.749 1.581 sum 6.414 -7.006 -17.840 20.211 Atomic orbital electron populations 1.21707 0.78201 1.04396 1.01583 1.45760 1.08601 1.08604 1.74231 1.19291 0.87384 0.83929 0.75475 1.90721 1.69923 1.32458 1.50267 1.21364 0.92240 1.13790 0.94964 1.19319 0.78745 0.83271 0.83901 1.90666 1.43585 1.23544 1.85978 1.48232 1.59901 1.17999 1.07188 1.21724 0.96355 1.00971 0.80537 1.22477 0.96643 0.89224 1.00377 1.62047 1.39400 1.20165 1.04415 1.19375 0.86981 0.96234 0.89093 1.21439 1.22642 0.92592 1.19496 0.91534 1.25907 0.95524 1.02948 0.95140 1.70084 1.27930 1.36262 1.23278 0.85383 0.78808 0.79136 0.77324 1.20014 1.20758 1.18564 1.22197 0.94870 1.00890 0.88889 1.22016 0.95370 0.83184 0.99936 1.23239 1.00625 0.97980 0.92432 1.23268 1.00709 0.92108 1.00011 0.87113 0.94279 0.91660 0.74980 0.89356 0.88366 0.89359 0.96890 1.02622 0.97193 0.92668 0.97999 0.90215 0.89217 0.87829 0.86302 0.85585 0.86317 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.71 127.77 1.37 2.95 16 2 N -0.72 -15.17 5.71 -484.51 -2.77 -17.93 16 3 C 0.55 14.29 6.46 87.66 0.57 14.86 16 4 O -0.56 -17.88 15.52 -3.03 -0.05 -17.93 16 5 C -0.22 -4.86 1.14 -53.67 -0.06 -4.92 16 6 C 0.56 15.55 6.91 87.65 0.61 16.15 16 7 O -0.56 -17.46 16.29 -3.04 -0.05 -17.51 16 8 N -0.60 -17.91 3.01 -817.95 -2.46 -20.37 16 9 C 0.13 3.78 6.57 86.35 0.57 4.35 16 10 C 0.04 1.52 5.62 86.38 0.49 2.01 16 11 N -0.54 -23.24 4.62 -899.82 -4.16 -27.40 16 12 C 0.21 11.25 4.72 85.56 0.40 11.65 16 13 C -0.52 -29.58 8.41 25.60 0.22 -29.36 16 14 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.94 -56.45 13.29 21.44 0.28 -56.17 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.06 2.43 5.46 86.38 0.47 2.91 16 22 C 0.12 3.66 6.29 86.35 0.54 4.20 16 23 C -0.11 -1.60 9.77 30.62 0.30 -1.30 16 24 C -0.12 -2.12 8.96 30.62 0.27 -1.85 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.41 7.05 8.83 -92.71 -0.82 6.23 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.10 2.78 7.11 -2.39 -0.02 2.76 16 31 H 0.09 3.09 7.99 -2.39 -0.02 3.07 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 34 H 0.01 0.57 7.97 -2.39 -0.02 0.55 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.08 3.47 6.67 -2.39 -0.02 3.45 16 38 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.10 3.09 4.20 -2.39 -0.01 3.08 16 40 H 0.12 1.74 8.07 -2.39 -0.02 1.72 16 41 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.12 2.00 8.00 -2.39 -0.02 1.98 16 43 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.87 351.46 -0.77 -72.65 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.20 Total: 16.17 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 6.20 Total: 22.27 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -9.10 Total: -121.87 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.10 Total: -35.43 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.87 -0.77 -72.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.887 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds