Wall clock time and date at job start Tue Mar 31 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99484 * 2 1 3 5 5 H 1.08995 * 109.47395 * 300.00287 * 4 2 1 6 6 C 1.53001 * 109.47253 * 60.00145 * 4 2 1 7 7 N 1.46503 * 109.47143 * 180.02562 * 4 2 1 8 8 C 1.34768 * 120.00262 * 155.00423 * 7 4 2 9 9 O 1.21277 * 119.99825 * 359.97438 * 8 7 4 10 10 C 1.50698 * 120.00119 * 180.02562 * 8 7 4 11 11 N 1.46494 * 109.47318 * 179.97438 * 10 8 7 12 12 C 1.35317 * 125.87155 * 125.32189 * 11 10 8 13 13 C 1.35352 * 106.17693 * 180.11507 * 12 11 10 14 14 C 1.50700 * 126.75361 * 179.84844 * 13 12 11 15 15 N 1.46498 * 109.46769 * 94.71485 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72432 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31611 * 120.00081 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47483 * 90.00178 * 20 18 16 22 22 H 1.48498 * 109.47011 * 210.00042 * 20 18 16 23 23 H 1.48502 * 109.47495 * 329.99664 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 13 12 11 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 13 12 26 26 H 1.09005 * 109.47300 * 300.00238 * 1 2 3 27 27 H 1.08993 * 109.47611 * 60.00274 * 1 2 3 28 28 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47223 * 239.99281 * 2 1 3 30 30 H 1.08994 * 109.47785 * 59.99625 * 3 2 1 31 31 H 1.09002 * 109.46926 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46817 * 299.99682 * 3 2 1 33 33 H 1.09005 * 109.46858 * 59.99812 * 6 4 2 34 34 H 1.09001 * 109.47447 * 179.97438 * 6 4 2 35 35 H 1.08997 * 109.46944 * 300.00235 * 6 4 2 36 36 H 0.97007 * 119.99430 * 335.00082 * 7 4 2 37 37 H 1.08998 * 109.47696 * 59.99537 * 10 8 7 38 38 H 1.09000 * 109.46826 * 299.99172 * 10 8 7 39 39 H 1.08002 * 126.91295 * 359.96910 * 12 11 10 40 40 H 1.09004 * 109.47210 * 334.71843 * 14 13 12 41 41 H 1.08994 * 109.47121 * 214.71813 * 14 13 12 42 42 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 43 43 H 0.97008 * 120.00329 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2495 7 7 3.5050 -0.7206 1.2497 8 6 4.1786 -0.8223 2.4125 9 8 3.5720 -0.9137 3.4587 10 6 5.6856 -0.8212 2.4129 11 7 6.1737 -0.9411 3.7889 12 6 7.0363 -1.8784 4.2454 13 6 7.2100 -1.6213 5.5629 14 6 8.0797 -2.3893 6.5245 15 7 9.3912 -1.7435 6.6192 16 6 10.3530 -2.2644 7.4433 17 1 10.1460 -3.1537 8.0200 18 6 11.5937 -1.6492 7.5375 19 7 12.5182 -2.1500 8.3291 20 14 11.9513 -0.1105 6.5405 21 1 11.5735 1.0896 7.3295 22 1 13.3999 -0.0550 6.2183 23 1 11.1651 -0.1426 5.2812 24 7 6.4620 -0.5480 5.8423 25 7 5.8606 -0.1691 4.7701 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8901 33 1 1.8933 -2.6776 0.3595 34 1 1.8936 -2.6776 2.1393 35 1 0.4400 -2.1637 1.2494 36 1 3.9901 -0.6472 0.4128 37 1 6.0484 0.1105 1.9789 38 1 6.0496 -1.6626 1.8233 39 1 7.4925 -2.6733 3.6740 40 1 8.2030 -3.4114 6.1661 41 1 7.6097 -2.4033 7.5078 42 1 9.5770 -0.9445 6.1015 43 1 13.3854 -1.7203 8.3947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603170798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:29 Heat of formation + Delta-G solvation = 43.712535 kcal Electronic energy + Delta-G solvation = -23261.798948 eV Core-core repulsion = 19764.667956 eV Total energy + Delta-G solvation = -3497.130992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.25994 -41.05779 -38.26684 -37.03422 -35.48270 -34.41005 -33.77974 -31.93779 -31.24449 -29.55083 -27.88335 -27.66887 -24.82519 -24.36381 -23.18729 -22.48817 -21.55555 -21.04025 -19.86822 -18.54393 -18.38436 -17.21262 -17.14893 -16.58892 -16.19057 -15.99478 -15.74964 -15.39530 -15.17010 -14.96119 -14.58692 -14.48976 -14.37324 -13.98288 -13.67102 -13.49937 -13.31525 -13.12068 -12.94803 -12.89920 -12.53333 -12.48075 -12.11516 -12.00283 -11.84946 -11.80525 -11.79663 -11.51818 -11.49001 -11.02037 -10.80692 -10.21622 -10.18879 -9.31566 -8.01576 -5.35238 0.58450 1.25834 1.35497 1.41875 1.42586 1.45482 1.50271 2.09352 2.48774 3.27587 3.30664 3.55061 3.66904 3.74558 3.83578 3.92751 4.01544 4.02744 4.07899 4.24210 4.38918 4.48094 4.54698 4.58118 4.77840 4.79195 4.84328 4.94160 4.99428 5.00231 5.12499 5.13997 5.15185 5.27146 5.32896 5.44020 5.50764 5.60136 5.75865 6.21756 6.42495 7.06149 7.12896 7.52223 7.80852 8.01697 9.19524 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.038855 B = 0.002576 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.452152 B =10867.288497 C =11213.006420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.150 4.150 4 C 0.146 3.854 5 H 0.056 0.944 6 C -0.162 4.162 7 N -0.701 5.701 8 C 0.500 3.500 9 O -0.567 6.567 10 C 0.089 3.911 11 N -0.280 5.280 12 C -0.014 4.014 13 C -0.047 4.047 14 C 0.241 3.759 15 N -0.751 5.751 16 C -0.232 4.232 17 H 0.066 0.934 18 C -0.060 4.060 19 N -0.980 5.980 20 Si 0.953 3.047 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.255 1.255 24 N -0.304 5.304 25 N -0.094 5.094 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.422 0.578 37 H 0.160 0.840 38 H 0.189 0.811 39 H 0.240 0.760 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.363 0.637 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.804 2.486 -30.206 38.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C 0.042 3.958 5 H 0.074 0.926 6 C -0.220 4.220 7 N -0.355 5.355 8 C 0.285 3.715 9 O -0.445 6.445 10 C -0.034 4.034 11 N -0.074 5.074 12 C -0.165 4.165 13 C -0.185 4.185 14 C 0.113 3.887 15 N -0.397 5.397 16 C -0.362 4.362 17 H 0.084 0.916 18 C -0.252 4.252 19 N -0.631 5.631 20 Si 0.781 3.219 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.180 1.180 24 N -0.172 5.172 25 N -0.073 5.073 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.260 0.740 37 H 0.177 0.823 38 H 0.206 0.794 39 H 0.257 0.743 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.196 0.804 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.028 3.502 -28.914 38.401 hybrid contribution 1.179 0.105 -0.363 1.238 sum -23.848 3.607 -29.277 37.933 Atomic orbital electron populations 1.21892 0.93930 1.02704 1.02254 1.21346 0.96814 0.96221 0.96729 1.21872 1.01566 0.95551 1.01768 1.21039 0.78931 0.96657 0.99217 0.92619 1.22198 1.02263 0.95633 1.01872 1.45761 1.07331 1.73825 1.08546 1.20720 0.90079 0.76393 0.84314 1.90855 1.70524 1.49760 1.33346 1.22436 0.91947 1.11622 0.77400 1.47069 1.29824 1.19854 1.10676 1.23968 0.98255 0.98831 0.95432 1.22294 1.02721 0.97971 0.95482 1.18889 0.81886 0.93786 0.94111 1.42670 1.11282 1.32576 1.53198 1.19056 0.92177 1.08092 1.16904 0.91607 1.25422 0.96253 1.02345 1.01174 1.69863 1.05940 1.43714 1.43535 0.85435 0.76979 0.79928 0.79552 1.21573 1.21461 1.17965 1.75060 1.09646 1.13133 1.19324 1.78264 1.19967 1.18012 0.91089 0.93562 0.91120 0.91464 0.88264 0.94342 0.91872 0.91307 0.90344 0.94968 0.90436 0.73975 0.82272 0.79352 0.74341 0.91231 0.95309 0.80421 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.84 71.98 0.64 -0.30 16 2 C -0.09 -0.53 2.56 -10.80 -0.03 -0.56 16 3 C -0.15 -1.03 9.03 71.98 0.65 -0.38 16 4 C 0.15 1.63 2.16 44.99 0.10 1.73 16 5 H 0.06 1.05 7.58 -2.39 -0.02 1.03 16 6 C -0.16 -1.78 9.13 71.98 0.66 -1.12 16 7 N -0.70 -6.02 4.38 -442.55 -1.94 -7.96 16 8 C 0.50 8.47 7.81 87.66 0.68 9.16 16 9 O -0.57 -17.31 15.34 -3.02 -0.05 -17.35 16 10 C 0.09 0.99 6.94 85.63 0.59 1.58 16 11 N -0.28 -7.11 3.20 -351.48 -1.12 -8.24 16 12 C -0.01 -0.36 11.50 83.49 0.96 0.60 16 13 C -0.05 -1.73 6.61 41.60 0.28 -1.46 16 14 C 0.24 9.99 6.82 85.63 0.58 10.58 16 15 N -0.75 -37.36 5.40 -347.18 -1.87 -39.23 16 16 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16 17 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 19 N -0.98 -63.70 13.97 21.65 0.30 -63.40 16 20 Si 0.95 47.36 27.74 68.60 1.90 49.26 16 21 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.25 -11.49 6.52 99.48 0.65 -10.84 16 24 N -0.30 -12.85 12.41 -48.60 -0.60 -13.45 16 25 N -0.09 -3.44 12.13 37.02 0.45 -3.00 16 26 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.35 6.43 -2.39 -0.02 0.34 16 29 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.34 7.44 -2.39 -0.02 0.32 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.73 6.43 -2.39 -0.02 0.71 16 36 H 0.42 0.03 8.39 -92.70 -0.78 -0.75 16 37 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.19 0.01 8.07 -2.39 -0.02 -0.01 16 39 H 0.24 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.36 17.80 5.52 -92.71 -0.51 17.29 16 43 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 Total: -1.00 -91.62 358.37 3.20 -88.42 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.32 Total: 11.01 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.46 Total: 3.94 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -4.79 Total: -135.28 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.90 Total: 49.26 kcal Total: -91.62 3.20 -88.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603170798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.129 kcal (2) G-P(sol) polarization free energy of solvation -91.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds