Wall clock time and date at job start Tue Mar 31 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00236 * 2 1 4 4 C 1.53005 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46942 * 65.00339 * 4 3 2 6 6 C 1.46497 * 120.00129 * 269.99599 * 5 4 3 7 7 C 1.50709 * 109.47273 * 270.00327 * 6 5 4 8 8 H 1.07999 * 119.99476 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00210 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99914 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46996 * 90.00193 * 11 9 7 13 13 H 1.48502 * 109.46931 * 210.00078 * 11 9 7 14 14 H 1.48498 * 109.47167 * 330.00145 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 5 4 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 5 4 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 5 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 15 20 20 C 1.34667 * 126.59406 * 85.02381 * 19 18 17 21 21 N 1.34123 * 108.02428 * 179.97438 * 20 19 18 22 22 C 1.30507 * 109.25548 * 359.97438 * 21 20 19 23 23 N 1.35042 * 108.69562 * 359.76947 * 22 21 20 24 24 C 1.46507 * 126.39497 * 180.26852 * 23 22 21 25 25 H 1.08998 * 109.46682 * 59.99819 * 1 2 3 26 26 H 1.08999 * 109.47685 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47102 * 300.00248 * 1 2 3 28 28 H 1.08998 * 109.47135 * 60.00388 * 3 2 1 29 29 H 1.08993 * 109.47193 * 299.99931 * 3 2 1 30 30 H 1.08995 * 109.47592 * 304.99865 * 4 3 2 31 31 H 1.09002 * 109.47093 * 185.00173 * 4 3 2 32 32 H 1.09000 * 109.46889 * 29.99981 * 6 5 4 33 33 H 1.09001 * 109.47460 * 150.00590 * 6 5 4 34 34 H 0.97000 * 120.00447 * 179.97438 * 10 9 7 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 37 37 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 38 38 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 39 39 H 1.08001 * 125.98665 * 359.96219 * 20 19 18 40 40 H 1.07994 * 125.64868 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46839 * 270.11462 * 24 23 22 42 42 H 1.08996 * 109.47325 * 30.11816 * 24 23 22 43 43 H 1.08998 * 109.47000 * 150.12213 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.5017 -1.2984 -0.9413 8 1 6.2202 -0.5464 -0.6505 9 6 5.8610 -2.6295 -0.9474 10 7 4.9860 -3.5451 -1.3019 11 14 7.5908 -3.1323 -0.4534 12 1 7.6345 -3.3836 1.0096 13 1 7.9731 -4.3698 -1.1798 14 1 8.5400 -2.0433 -0.7971 15 6 4.2634 1.3327 -2.3200 16 8 4.6291 0.8189 -3.3560 17 6 4.1243 2.8306 -2.2299 18 6 4.5018 3.4596 -3.5726 19 6 4.3632 4.9575 -3.4822 20 6 5.2865 5.8228 -3.0214 21 7 4.7759 7.0600 -3.1088 22 6 3.5714 6.9943 -3.6068 23 7 3.2772 5.7006 -3.8590 24 6 2.0278 5.1880 -4.4269 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8509 0.5683 0.8426 31 1 3.9786 2.1763 0.0902 32 1 3.3857 -1.3633 -0.6714 33 1 3.9138 -1.2124 -2.3645 34 1 5.2388 -4.4816 -1.3066 35 1 3.0928 3.0857 -1.9864 36 1 4.7860 3.2109 -1.4517 37 1 5.5332 3.2044 -3.8161 38 1 3.8401 3.0793 -4.3508 39 1 6.2663 5.5656 -2.6470 40 1 2.9194 7.8354 -3.7902 41 1 1.3265 4.9673 -3.6222 42 1 1.5957 5.9374 -5.0901 43 1 2.2316 4.2779 -4.9910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:39 Heat of formation + Delta-G solvation = -46.024296 kcal Electronic energy + Delta-G solvation = -24160.080386 eV Core-core repulsion = 20626.765362 eV Total energy + Delta-G solvation = -3533.315024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.99366 -40.77201 -38.75631 -36.55332 -35.22910 -34.80205 -34.36250 -31.15855 -30.12450 -28.71463 -27.75194 -27.08472 -25.91284 -24.26008 -23.61556 -22.30696 -20.73008 -19.88898 -18.62849 -18.27412 -17.62749 -17.45576 -16.92759 -16.78857 -16.53323 -16.32716 -15.94891 -15.73454 -15.28540 -14.73618 -14.47740 -14.33334 -13.96021 -13.82026 -13.75550 -13.54681 -13.44866 -13.15218 -13.04238 -12.91227 -12.82971 -12.68532 -12.49579 -12.19333 -12.14006 -11.88664 -11.65859 -10.90106 -10.62948 -10.59939 -10.52008 -10.43943 -9.38610 -9.27408 -8.17657 -6.32315 1.09824 1.37296 1.40316 1.50595 1.85782 1.95322 2.21307 2.34610 2.49369 2.98323 3.11872 3.52948 3.91177 3.95467 3.98743 4.03328 4.12344 4.18728 4.27943 4.40392 4.44944 4.48041 4.52800 4.55100 4.59419 4.64028 4.71327 4.75061 4.86679 4.96004 4.98591 5.09655 5.23889 5.31661 5.48033 5.61046 5.80294 5.90296 6.12670 6.35710 6.36246 6.76191 6.86545 7.15838 7.32454 7.52222 8.89365 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.004195 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.835284 B = 6672.329519 C = 7956.478603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.046 3.954 4 C 0.104 3.896 5 N -0.595 5.595 6 C 0.271 3.729 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.494 3.506 16 O -0.598 6.598 17 C -0.114 4.114 18 C -0.018 4.018 19 C -0.021 4.021 20 C -0.045 4.045 21 N -0.535 5.535 22 C 0.183 3.817 23 N -0.458 5.458 24 C 0.062 3.938 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.026 0.974 33 H -0.012 1.012 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.169 0.831 40 H 0.241 0.759 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.287 19.855 0.210 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.031 4.031 4 C -0.019 4.019 5 N -0.325 5.325 6 C 0.150 3.850 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.196 1.196 15 C 0.284 3.716 16 O -0.479 6.479 17 C -0.154 4.154 18 C -0.057 4.057 19 C -0.136 4.136 20 C -0.192 4.192 21 N -0.253 5.253 22 C -0.099 4.099 23 N -0.141 5.141 24 C -0.079 4.079 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.044 0.956 33 H 0.007 0.993 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.187 0.813 40 H 0.257 0.743 41 H 0.110 0.890 42 H 0.134 0.866 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.776 19.887 -0.159 22.619 hybrid contribution 0.267 -1.509 -0.190 1.544 sum -10.510 18.377 -0.349 21.173 Atomic orbital electron populations 1.22850 0.80050 1.03027 1.00842 1.88055 1.21151 1.29043 1.95518 1.23170 0.93394 0.84768 1.01762 1.21875 0.93286 1.00179 0.86543 1.48149 1.64296 1.07872 1.12215 1.18617 0.95363 0.76027 0.94998 1.21782 0.98390 0.92611 1.45342 0.92839 1.25858 1.01787 0.96441 0.95161 1.70077 1.36571 1.01365 1.48906 0.85435 0.79162 0.77586 0.78728 1.18956 1.20708 1.19619 1.21354 0.76751 0.90691 0.82839 1.90642 1.49147 1.76600 1.31536 1.21633 1.05161 0.88608 0.99978 1.19561 1.03360 0.86131 0.96690 1.21102 0.89991 0.94456 1.08090 1.22256 1.01066 0.88386 1.07523 1.70248 1.09440 1.24889 1.20747 1.25626 0.95220 0.87002 1.02043 1.45519 1.14284 1.07562 1.46688 1.22356 0.82756 1.02242 1.00560 0.93582 0.90254 0.92008 0.89225 0.92653 0.90748 0.85918 0.95605 0.99342 0.92588 0.87225 0.87005 0.90410 0.91096 0.81341 0.74303 0.88979 0.86557 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.42 -13.89 9.53 -148.98 -1.42 -15.31 16 3 C 0.05 1.16 6.27 71.98 0.45 1.61 16 4 C 0.10 3.16 5.61 86.38 0.48 3.64 16 5 N -0.60 -25.18 2.42 -826.15 -2.00 -27.18 16 6 C 0.27 15.13 4.98 85.64 0.43 15.56 16 7 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 11 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 C 0.49 19.87 7.67 87.66 0.67 20.54 16 16 O -0.60 -30.40 15.56 -3.04 -0.05 -30.44 16 17 C -0.11 -2.94 4.23 29.85 0.13 -2.82 16 18 C -0.02 -0.47 4.84 29.85 0.14 -0.33 16 19 C -0.02 -0.48 6.21 40.95 0.25 -0.22 16 20 C -0.04 -1.13 11.79 83.52 0.98 -0.15 16 21 N -0.53 -13.53 11.25 -200.32 -2.25 -15.78 16 22 C 0.18 3.25 12.56 180.26 2.26 5.51 16 23 N -0.46 -7.98 3.15 -537.88 -1.70 -9.67 16 24 C 0.06 0.60 11.00 127.77 1.41 2.00 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.24 7.28 -2.39 -0.02 1.22 16 30 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 31 H 0.12 2.67 6.45 -2.39 -0.02 2.65 16 32 H 0.03 1.52 7.11 -2.39 -0.02 1.50 16 33 H -0.01 -0.75 7.42 -2.39 -0.02 -0.77 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.11 2.21 7.23 -2.38 -0.02 2.19 16 36 H 0.11 2.51 7.41 -2.39 -0.02 2.49 16 37 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 38 H 0.07 1.87 7.05 -2.39 -0.02 1.86 16 39 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 40 H 0.24 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.94 7.11 -2.39 -0.02 0.92 16 Total: -1.00 -85.38 361.41 5.05 -80.32 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.99 Total: 11.48 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 9.17 Total: 16.22 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -5.66 Total: -110.29 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.47 Total: -45.75 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -85.38 5.05 -80.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -85.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds