Wall clock time and date at job start Tue Mar 31 2020 04:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33322 * 126.81548 * 2 1 4 4 N 1.28512 * 109.44291 * 179.97438 * 3 2 1 5 5 N 1.28722 * 110.63245 * 359.97438 * 4 3 2 6 6 H 0.97000 * 126.02905 * 180.02562 * 5 4 3 7 7 C 1.37008 * 126.81419 * 179.97438 * 2 1 3 8 8 C 1.47228 * 127.18639 * 359.76002 * 7 2 1 9 9 O 1.21617 * 120.00029 * 252.11291 * 8 7 2 10 10 N 1.34776 * 120.00178 * 72.11096 * 8 7 2 11 11 C 1.46497 * 120.00061 * 5.77114 * 10 8 7 12 12 C 1.50700 * 109.47392 * 94.83340 * 11 10 8 13 13 H 1.08003 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00444 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99835 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00610 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47327 * 59.99479 * 16 14 12 18 18 H 1.48494 * 109.47348 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46664 * 299.99736 * 16 14 12 20 20 C 1.46503 * 120.00258 * 185.76594 * 10 8 7 21 21 C 1.53005 * 109.47062 * 89.99990 * 20 10 8 22 22 C 1.52997 * 109.47001 * 180.02562 * 21 20 10 23 23 N 1.46899 * 109.46732 * 180.02562 * 22 21 20 24 24 C 1.46899 * 111.00112 * 66.04858 * 23 22 21 25 25 C 1.46903 * 110.99794 * 189.99977 * 23 22 21 26 26 H 1.09003 * 109.46880 * 270.02457 * 1 2 3 27 27 H 1.09005 * 109.47215 * 30.02006 * 1 2 3 28 28 H 1.08994 * 109.47286 * 150.02409 * 1 2 3 29 29 H 1.09001 * 109.47171 * 214.83628 * 11 10 8 30 30 H 1.09005 * 109.47275 * 334.83388 * 11 10 8 31 31 H 0.97001 * 120.00595 * 179.97438 * 15 14 12 32 32 H 1.08991 * 109.47638 * 210.00294 * 20 10 8 33 33 H 1.09002 * 109.46803 * 330.00581 * 20 10 8 34 34 H 1.09000 * 109.46913 * 300.00665 * 21 20 10 35 35 H 1.08998 * 109.46844 * 60.00101 * 21 20 10 36 36 H 1.09002 * 109.47183 * 299.99820 * 22 21 20 37 37 H 1.08998 * 109.47400 * 60.00244 * 22 21 20 38 38 H 1.08999 * 109.47471 * 59.99449 * 24 23 22 39 39 H 1.08998 * 109.47247 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.46990 * 299.99698 * 24 23 22 41 41 H 1.09000 * 109.47255 * 60.00286 * 25 23 22 42 42 H 1.09001 * 109.46904 * 180.02562 * 25 23 22 43 43 H 1.08998 * 109.47071 * 300.00085 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6056 -0.6015 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5121 0.0060 9 8 2.0689 -3.1828 1.0099 10 7 1.3881 -3.0644 -1.1013 11 6 1.3273 -2.2957 -2.3469 12 6 2.5289 -2.6200 -3.1966 13 1 3.2641 -3.3283 -2.8443 14 6 2.6897 -2.0127 -4.4239 15 7 1.7941 -1.1505 -4.8532 16 14 4.1787 -2.4152 -5.4775 17 1 4.1848 -3.8665 -5.7919 18 1 4.1171 -1.6359 -6.7400 19 1 5.4177 -2.0637 -4.7382 20 6 0.8684 -4.4335 -1.0594 21 6 -0.6110 -4.4057 -0.6701 22 6 -1.1536 -5.8356 -0.6257 23 7 -2.5741 -5.8088 -0.2525 24 6 -3.3805 -5.1613 -1.2958 25 6 -3.0694 -7.1624 0.0314 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 0.4180 -2.5544 -2.8895 30 1 1.3222 -1.2303 -2.1165 31 1 1.9074 -0.7228 -5.7165 32 1 0.9770 -4.8936 -2.0415 33 1 1.4270 -5.0117 -0.3234 34 1 -0.7197 -3.9456 0.3120 35 1 -1.1696 -3.8274 -1.4060 36 1 -1.0449 -6.2961 -1.6077 37 1 -0.5950 -6.4135 0.1105 38 1 -3.2750 -5.7118 -2.2306 39 1 -4.4279 -5.1554 -0.9942 40 1 -3.0369 -4.1365 -1.4369 41 1 -2.4997 -7.5925 0.8551 42 1 -4.1235 -7.1137 0.3046 43 1 -2.9526 -7.7854 -0.8554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789907848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:40 Heat of formation + Delta-G solvation = 55.437501 kcal Electronic energy + Delta-G solvation = -24659.931957 eV Core-core repulsion = 21163.309397 eV Total energy + Delta-G solvation = -3496.622560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83336 -39.23843 -37.63450 -35.43879 -33.52448 -33.06329 -32.25701 -31.22661 -27.69616 -27.64440 -27.50759 -26.07819 -23.83200 -23.15553 -22.40312 -21.37017 -20.70398 -19.31505 -17.59755 -16.69555 -16.60155 -16.07559 -15.62298 -15.46041 -15.07707 -14.72881 -14.60319 -14.15619 -13.94567 -13.34205 -13.05927 -12.81915 -12.50323 -12.43180 -12.28702 -12.20602 -11.87164 -11.72251 -11.66693 -11.52678 -11.32964 -11.25770 -11.06979 -10.86754 -10.70373 -10.39765 -10.23777 -10.06173 -9.90989 -9.61692 -8.77502 -8.57631 -8.40013 -7.99503 -6.28772 -4.37599 1.72688 2.55034 2.80719 3.15522 3.22376 3.22696 3.26849 3.69287 3.99635 4.23090 4.75560 4.96174 5.01971 5.05344 5.10091 5.19401 5.24747 5.33933 5.48899 5.57111 5.58708 5.67125 5.69451 5.74321 5.80871 5.89657 5.93290 6.01284 6.04888 6.17948 6.32876 6.45879 6.53527 6.58006 6.97867 7.00278 7.04636 7.12108 7.28524 7.61617 7.90301 8.00295 8.49422 8.70770 8.77603 9.30410 10.78210 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.005650 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.120443 B = 4954.997475 C = 6482.440050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.020 3.980 3 N -0.266 5.266 4 N -0.070 5.070 5 N -0.363 5.363 6 H 0.450 0.550 7 C -0.019 4.019 8 C 0.589 3.411 9 O -0.553 6.553 10 N -0.572 5.572 11 C 0.232 3.768 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.069 3.931 15 N -0.884 5.884 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.276 1.276 20 C 0.121 3.879 21 C -0.130 4.130 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.021 3.979 25 C 0.025 3.975 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -6.797 6.517 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 N -0.133 5.133 4 N -0.050 5.050 5 N -0.085 5.085 6 H 0.296 0.704 7 C -0.156 4.156 8 C 0.372 3.628 9 O -0.431 6.431 10 N -0.301 5.301 11 C 0.113 3.887 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.521 5.521 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.003 4.003 21 C -0.169 4.169 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.128 4.128 25 C -0.123 4.123 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.013 -5.357 7.264 10.846 hybrid contribution 0.966 -1.927 -1.712 2.752 sum -5.048 -7.284 5.552 10.458 Atomic orbital electron populations 1.20141 0.85847 1.04096 1.02697 1.21989 0.97997 0.87290 1.04715 1.74699 0.95339 1.26165 1.17137 1.78054 1.15823 0.92195 1.18919 1.45150 1.08465 1.06521 1.48407 0.70395 1.21721 0.85586 0.96582 1.11692 1.16852 0.78627 0.83631 0.83690 1.90769 1.57040 1.61903 1.33435 1.48144 1.56342 1.14533 1.11053 1.19611 0.98117 0.91999 0.79003 1.21349 1.07894 1.26522 1.02765 0.92257 1.24918 0.96580 0.94581 0.97464 1.69895 1.34542 1.27154 1.20535 0.86578 0.82774 0.78568 0.79697 1.20041 1.20952 1.20191 1.21329 0.93045 0.83248 1.02691 1.21958 0.95882 0.96249 1.02844 1.22060 0.87955 0.97584 0.99347 1.61971 1.03060 1.19030 1.43117 1.22449 0.97768 1.00151 0.92399 1.22367 1.00802 0.89048 1.00130 0.90690 0.89955 0.90396 0.94295 0.93535 0.92272 0.89793 0.90522 0.90910 0.91357 0.94580 0.90699 0.95637 0.91717 0.90676 0.91439 0.91586 0.95828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.09 36.01 0.36 -0.70 16 2 C 0.02 0.37 6.25 -82.39 -0.51 -0.14 16 3 N -0.27 -5.35 12.35 33.51 0.41 -4.94 16 4 N -0.07 -1.35 13.35 60.35 0.81 -0.55 16 5 N -0.36 -6.53 7.07 33.31 0.24 -6.30 16 6 H 0.45 6.64 8.96 -190.32 -1.71 4.93 16 7 C -0.02 -0.37 5.58 -82.34 -0.46 -0.83 16 8 C 0.59 11.58 7.30 -12.61 -0.09 11.49 16 9 O -0.55 -11.61 16.66 5.26 0.09 -11.53 16 10 N -0.57 -10.99 2.46 -176.40 -0.43 -11.42 16 11 C 0.23 5.19 4.96 -5.20 -0.03 5.16 16 12 C -0.55 -13.64 9.38 -34.44 -0.32 -13.96 16 13 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.88 -23.98 13.29 55.43 0.74 -23.24 16 16 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.12 1.97 5.47 -4.04 -0.02 1.95 16 21 C -0.13 -1.86 5.46 -26.73 -0.15 -2.00 16 22 C 0.06 0.72 4.96 -3.83 -0.02 0.70 16 23 N -0.55 -6.47 5.02 -251.26 -1.26 -7.73 16 24 C 0.02 0.22 9.32 60.06 0.56 0.78 16 25 C 0.02 0.24 9.57 60.07 0.57 0.81 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 29 H 0.04 0.91 8.11 -51.93 -0.42 0.48 16 30 H 0.05 1.12 5.46 -51.93 -0.28 0.83 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.08 1.25 7.35 -51.93 -0.38 0.87 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.00 6.55 -51.93 -0.34 0.65 16 36 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 41 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -30.00 360.91 -7.25 -37.25 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.05 Total: 2.89 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.20 Total: 4.95 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.50 Total: -54.18 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.00 -7.25 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789907848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.686 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds