Wall clock time and date at job start Tue Mar 31 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33322 * 126.81548 * 2 1 4 4 N 1.28512 * 109.44291 * 179.97438 * 3 2 1 5 5 N 1.28722 * 110.63245 * 359.97438 * 4 3 2 6 6 H 0.97000 * 126.02905 * 180.02562 * 5 4 3 7 7 C 1.37008 * 126.81419 * 179.97438 * 2 1 3 8 8 C 1.47228 * 127.18639 * 359.76002 * 7 2 1 9 9 O 1.21617 * 120.00029 * 252.11291 * 8 7 2 10 10 N 1.34776 * 120.00178 * 72.11096 * 8 7 2 11 11 C 1.46497 * 120.00061 * 5.77114 * 10 8 7 12 12 C 1.50700 * 109.47392 * 94.83340 * 11 10 8 13 13 H 1.08003 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00444 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99835 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00610 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47327 * 59.99479 * 16 14 12 18 18 H 1.48494 * 109.47348 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46664 * 299.99736 * 16 14 12 20 20 C 1.46503 * 120.00258 * 185.76594 * 10 8 7 21 21 C 1.53005 * 109.47062 * 89.99990 * 20 10 8 22 22 C 1.52997 * 109.47001 * 180.02562 * 21 20 10 23 23 N 1.46899 * 109.46732 * 180.02562 * 22 21 20 24 24 C 1.46899 * 111.00112 * 66.04858 * 23 22 21 25 25 C 1.46903 * 110.99794 * 189.99977 * 23 22 21 26 26 H 1.09003 * 109.46880 * 270.02457 * 1 2 3 27 27 H 1.09005 * 109.47215 * 30.02006 * 1 2 3 28 28 H 1.08994 * 109.47286 * 150.02409 * 1 2 3 29 29 H 1.09001 * 109.47171 * 214.83628 * 11 10 8 30 30 H 1.09005 * 109.47275 * 334.83388 * 11 10 8 31 31 H 0.97001 * 120.00595 * 179.97438 * 15 14 12 32 32 H 1.08991 * 109.47638 * 210.00294 * 20 10 8 33 33 H 1.09002 * 109.46803 * 330.00581 * 20 10 8 34 34 H 1.09000 * 109.46913 * 300.00665 * 21 20 10 35 35 H 1.08998 * 109.46844 * 60.00101 * 21 20 10 36 36 H 1.09002 * 109.47183 * 299.99820 * 22 21 20 37 37 H 1.08998 * 109.47400 * 60.00244 * 22 21 20 38 38 H 1.08999 * 109.47471 * 59.99449 * 24 23 22 39 39 H 1.08998 * 109.47247 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.46990 * 299.99698 * 24 23 22 41 41 H 1.09000 * 109.47255 * 60.00286 * 25 23 22 42 42 H 1.09001 * 109.46904 * 180.02562 * 25 23 22 43 43 H 1.08998 * 109.47071 * 300.00085 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6056 -0.6015 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5121 0.0060 9 8 2.0689 -3.1828 1.0099 10 7 1.3881 -3.0644 -1.1013 11 6 1.3273 -2.2957 -2.3469 12 6 2.5289 -2.6200 -3.1966 13 1 3.2641 -3.3283 -2.8443 14 6 2.6897 -2.0127 -4.4239 15 7 1.7941 -1.1505 -4.8532 16 14 4.1787 -2.4152 -5.4775 17 1 4.1848 -3.8665 -5.7919 18 1 4.1171 -1.6359 -6.7400 19 1 5.4177 -2.0637 -4.7382 20 6 0.8684 -4.4335 -1.0594 21 6 -0.6110 -4.4057 -0.6701 22 6 -1.1536 -5.8356 -0.6257 23 7 -2.5741 -5.8088 -0.2525 24 6 -3.3805 -5.1613 -1.2958 25 6 -3.0694 -7.1624 0.0314 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 0.4180 -2.5544 -2.8895 30 1 1.3222 -1.2303 -2.1165 31 1 1.9074 -0.7228 -5.7165 32 1 0.9770 -4.8936 -2.0415 33 1 1.4270 -5.0117 -0.3234 34 1 -0.7197 -3.9456 0.3120 35 1 -1.1696 -3.8274 -1.4060 36 1 -1.0449 -6.2961 -1.6077 37 1 -0.5950 -6.4135 0.1105 38 1 -3.2750 -5.7118 -2.2306 39 1 -4.4279 -5.1554 -0.9942 40 1 -3.0369 -4.1365 -1.4369 41 1 -2.4997 -7.5925 0.8551 42 1 -4.1235 -7.1137 0.3046 43 1 -2.9526 -7.7854 -0.8554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789907848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:39 Heat of formation + Delta-G solvation = 34.698962 kcal Electronic energy + Delta-G solvation = -24660.831247 eV Core-core repulsion = 21163.309397 eV Total energy + Delta-G solvation = -3497.521850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.32890 -40.79444 -38.61378 -37.01540 -34.97572 -34.82345 -33.77030 -32.57438 -29.34809 -28.98182 -28.43890 -27.35560 -25.31218 -24.84695 -23.71378 -22.77247 -21.75398 -20.80957 -19.19587 -18.48251 -18.20673 -17.61467 -16.95136 -16.50565 -16.44280 -16.21674 -15.90323 -15.43202 -15.08526 -14.74123 -14.58801 -14.30474 -14.01704 -13.60815 -13.52665 -13.34110 -13.22053 -13.15001 -13.01127 -12.75478 -12.65805 -12.58232 -12.41245 -12.32926 -12.20087 -12.09658 -11.76229 -11.55373 -11.45785 -11.21878 -10.66327 -10.15312 -9.63023 -9.27752 -8.25513 -6.39987 0.21900 1.03272 1.30694 1.37709 1.39670 1.46311 1.78333 2.20928 2.38930 3.05666 3.07202 3.30373 3.48936 3.78628 3.96929 4.15298 4.19059 4.26129 4.41396 4.47518 4.54231 4.64022 4.66459 4.69657 4.73279 4.78437 4.82473 4.85568 4.89375 5.04442 5.06654 5.13601 5.18996 5.24409 5.30356 5.56552 5.70023 5.75552 5.98479 6.09202 6.15147 6.32770 6.69688 6.97610 7.26410 7.31895 8.80118 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.005650 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.120443 B = 4954.997475 C = 6482.440050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.018 3.982 3 N -0.287 5.287 4 N -0.076 5.076 5 N -0.352 5.352 6 H 0.462 0.538 7 C -0.039 4.039 8 C 0.594 3.406 9 O -0.566 6.566 10 N -0.569 5.569 11 C 0.250 3.750 12 C -0.552 4.552 13 H 0.057 0.943 14 C 0.025 3.975 15 N -0.914 5.914 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.118 3.882 21 C -0.116 4.116 22 C 0.065 3.935 23 N -0.563 5.563 24 C 0.021 3.979 25 C 0.025 3.975 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.267 0.733 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.026 0.974 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 -7.847 6.678 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 N -0.153 5.153 4 N -0.056 5.056 5 N -0.078 5.078 6 H 0.310 0.690 7 C -0.176 4.176 8 C 0.378 3.622 9 O -0.446 6.446 10 N -0.298 5.298 11 C 0.130 3.870 12 C -0.590 4.590 13 H 0.075 0.925 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.004 4.004 21 C -0.155 4.155 22 C -0.064 4.064 23 N -0.287 5.287 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.279 -6.435 7.436 11.667 hybrid contribution 1.033 -1.617 -1.725 2.580 sum -5.246 -8.052 5.711 11.179 Atomic orbital electron populations 1.20279 0.83753 1.04386 1.04359 1.22555 0.99443 0.86791 1.03429 1.74688 0.95669 1.26819 1.18159 1.77991 1.15868 0.92680 1.19026 1.45192 1.08800 1.06276 1.47502 0.68982 1.21820 0.86184 0.96641 1.12957 1.16814 0.78283 0.83649 0.83430 1.90757 1.57686 1.62363 1.33775 1.48073 1.56360 1.15321 1.10000 1.19196 0.96751 0.91433 0.79643 1.21617 1.08397 1.25964 1.03034 0.92504 1.25603 0.98829 0.94552 0.98681 1.69993 1.36134 1.28255 1.20913 0.85708 0.79844 0.78661 0.78111 1.19147 1.21010 1.20027 1.21496 0.94381 0.81679 1.02862 1.21786 0.94292 0.97655 1.01782 1.21964 0.88649 0.95994 0.99790 1.61964 1.02735 1.20551 1.43435 1.22457 0.98450 0.99461 0.92367 1.22422 1.01550 0.87847 1.00505 0.88267 0.88980 0.90720 0.95281 0.95031 0.92383 0.89779 0.90195 0.92062 0.91896 0.94258 0.90079 0.95548 0.90252 0.91739 0.90935 0.90378 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.07 10.09 71.24 0.72 -1.35 16 2 C 0.02 0.66 6.25 42.04 0.26 0.92 16 3 N -0.29 -11.40 12.35 -47.88 -0.59 -11.99 16 4 N -0.08 -2.90 13.35 37.02 0.49 -2.41 16 5 N -0.35 -12.52 7.07 -48.53 -0.34 -12.87 16 6 H 0.46 13.36 8.96 -219.89 -1.97 11.39 16 7 C -0.04 -1.49 5.58 40.41 0.23 -1.27 16 8 C 0.59 23.05 7.30 86.61 0.63 23.69 16 9 O -0.57 -23.33 16.66 -4.09 -0.07 -23.40 16 10 N -0.57 -21.63 2.46 -830.27 -2.04 -23.67 16 11 C 0.25 11.18 4.96 85.63 0.42 11.60 16 12 C -0.55 -27.25 9.38 25.60 0.24 -27.01 16 13 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 14 C 0.02 1.26 5.46 84.65 0.46 1.72 16 15 N -0.91 -49.58 13.29 21.45 0.28 -49.29 16 16 Si 0.95 40.82 29.54 68.60 2.03 42.85 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 C 0.12 3.79 5.47 86.38 0.47 4.26 16 21 C -0.12 -3.22 5.46 30.59 0.17 -3.05 16 22 C 0.06 1.49 4.96 86.30 0.43 1.92 16 23 N -0.56 -12.36 5.02 -948.85 -4.76 -17.13 16 24 C 0.02 0.42 9.32 127.69 1.19 1.61 16 25 C 0.02 0.42 9.57 127.69 1.22 1.64 16 26 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.07 2.27 7.71 -2.39 -0.02 2.25 16 29 H 0.03 1.36 8.11 -2.39 -0.02 1.34 16 30 H 0.03 1.53 5.46 -2.38 -0.01 1.51 16 31 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.08 2.52 7.35 -2.39 -0.02 2.50 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.81 6.55 -2.39 -0.02 1.79 16 36 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.08 1.77 8.06 -2.39 -0.02 1.75 16 38 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 40 H 0.06 1.43 6.47 -2.39 -0.02 1.41 16 41 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 42 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 43 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -61.73 360.91 0.49 -61.24 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.96 Total: 21.98 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.45 Total: 14.68 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -6.96 Total: -117.35 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.07 Total: -23.40 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -61.73 0.49 -61.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789907848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.939 kcal (2) G-P(sol) polarization free energy of solvation -61.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds