Wall clock time and date at job start Tue Mar 31 2020 03:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.47101 * 119.99873 * 2 1 4 4 O 1.21614 * 120.00126 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00252 * 179.97438 * 3 2 1 6 6 C 1.46507 * 119.99862 * 359.97438 * 5 3 2 7 7 C 1.46503 * 120.00391 * 180.02562 * 5 3 2 8 8 C 1.50695 * 109.47220 * 89.99870 * 7 5 3 9 9 O 1.21281 * 120.00149 * 0.02562 * 8 7 5 10 10 N 1.34771 * 119.99890 * 180.02562 * 8 7 5 11 11 C 1.47087 * 120.88164 * 179.97438 * 10 8 7 12 12 C 1.53233 * 108.51817 * 231.20398 * 11 10 8 13 13 N 1.46905 * 109.34461 * 306.16600 * 12 11 10 14 14 C 1.46895 * 110.99974 * 187.25362 * 13 12 11 15 15 C 1.50702 * 109.46770 * 170.00187 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72214 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.46900 * 111.26196 * 63.11001 * 13 12 11 24 24 C 1.47077 * 120.88346 * 0.02562 * 10 8 7 25 25 H 1.08005 * 119.99719 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00143 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00313 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47335 * 270.00333 * 6 5 3 29 29 H 1.09000 * 109.47086 * 30.00119 * 6 5 3 30 30 H 1.09000 * 109.47115 * 149.99876 * 6 5 3 31 31 H 1.09000 * 109.46349 * 329.99604 * 7 5 3 32 32 H 1.09001 * 109.46942 * 210.00130 * 7 5 3 33 33 H 1.08999 * 109.62348 * 111.49529 * 11 10 8 34 34 H 1.08990 * 109.78576 * 351.00887 * 11 10 8 35 35 H 1.09003 * 109.49046 * 186.21182 * 12 11 10 36 36 H 1.08999 * 109.49709 * 66.12959 * 12 11 10 37 37 H 1.09004 * 109.47258 * 50.00511 * 14 13 12 38 38 H 1.08994 * 109.47601 * 290.00103 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.49699 * 56.85399 * 23 13 12 41 41 H 1.09003 * 109.48977 * 176.93746 * 23 13 12 42 42 H 1.09005 * 109.63045 * 248.50602 * 24 10 8 43 43 H 1.08998 * 109.62824 * 9.08326 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4573 2.3272 -0.0005 5 7 3.4131 1.2740 0.0005 6 6 4.1457 0.0053 0.0017 7 6 4.1456 2.5428 0.0011 8 6 4.3962 2.9775 1.4220 9 8 4.0022 2.2946 2.3436 10 7 5.0582 4.1252 1.6688 11 6 5.3129 4.5683 3.0480 12 6 4.8431 6.0201 3.1874 13 7 5.4765 6.8389 2.1451 14 6 5.1881 8.2649 2.3479 15 6 6.0436 9.0874 1.4191 16 1 6.7323 8.5996 0.7452 17 6 5.9425 10.4625 1.4253 18 7 5.1036 11.0565 2.2456 19 14 6.9974 11.4817 0.2686 20 1 7.8514 10.5805 -0.5460 21 1 6.1214 12.2774 -0.6285 22 1 7.8575 12.3974 1.0603 23 6 5.0656 6.4044 0.8033 24 6 5.5441 4.9686 0.5661 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8700 -0.9353 0.0004 28 1 4.3270 -0.3087 1.0296 29 1 3.5569 -0.7547 -0.5119 30 1 5.0983 0.1353 -0.5119 31 1 3.5567 3.3024 -0.5129 32 1 5.0982 2.4125 -0.5124 33 1 6.3801 4.5068 3.2610 34 1 4.7632 3.9369 3.7458 35 1 5.1240 6.4006 4.1695 36 1 3.7596 6.0641 3.0761 37 1 5.4077 8.5367 3.3804 38 1 4.1359 8.4563 2.1378 39 1 5.0328 12.0240 2.2502 40 1 3.9791 6.4429 0.7252 41 1 5.5080 7.0634 0.0562 42 1 6.6336 4.9456 0.5401 43 1 5.1447 4.6011 -0.3792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827478177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:27 Heat of formation + Delta-G solvation = -49.902350 kcal Electronic energy + Delta-G solvation = -24109.173341 eV Core-core repulsion = 20575.690152 eV Total energy + Delta-G solvation = -3533.483189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.61069 -40.53953 -38.95575 -36.55003 -35.99840 -34.45080 -33.96160 -32.41669 -30.49619 -29.50743 -27.57721 -27.04912 -24.79234 -24.25745 -23.43095 -22.01852 -20.12635 -19.63544 -18.65878 -18.52127 -18.47494 -17.46959 -16.84122 -16.56103 -16.41442 -16.05086 -15.91770 -15.56341 -15.33176 -15.04518 -14.61390 -14.39785 -14.37921 -14.08135 -13.86996 -13.59732 -13.39106 -13.09400 -12.94200 -12.76935 -12.62923 -12.59385 -12.41843 -12.32148 -12.13595 -11.80403 -11.29000 -11.18550 -11.03976 -10.78315 -10.63916 -9.81883 -9.74095 -9.12219 -8.21248 -6.32099 0.42080 1.43346 1.43824 1.48741 1.57513 1.67752 2.15886 2.32941 2.40804 3.10980 3.18788 3.44119 3.61772 3.94162 4.00088 4.11265 4.15466 4.19349 4.22224 4.30994 4.32020 4.40613 4.50564 4.68322 4.70187 4.74988 4.79412 4.90282 4.95282 4.98646 5.15685 5.18246 5.24532 5.30243 5.40221 5.50408 5.62755 5.99680 6.17780 6.29174 6.36721 6.51158 6.84061 7.00555 7.10478 7.38154 8.90736 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.003069 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.571582 B = 9121.827317 C = 9286.945552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.226 4.226 3 C 0.531 3.469 4 O -0.597 6.597 5 N -0.598 5.598 6 C 0.073 3.927 7 C 0.097 3.903 8 C 0.495 3.505 9 O -0.580 6.580 10 N -0.610 5.610 11 C 0.129 3.871 12 C 0.042 3.958 13 N -0.534 5.534 14 C 0.207 3.793 15 C -0.519 4.519 16 H 0.074 0.926 17 C -0.003 4.003 18 N -0.939 5.939 19 Si 0.974 3.026 20 H -0.255 1.255 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.046 3.954 24 C 0.120 3.880 25 H 0.156 0.844 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.005 0.995 37 H 0.004 0.996 38 H -0.046 1.046 39 H 0.264 0.736 40 H 0.006 0.994 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -25.762 -8.723 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.246 4.246 3 C 0.324 3.676 4 O -0.480 6.480 5 N -0.328 5.328 6 C -0.068 4.068 7 C -0.030 4.030 8 C 0.284 3.716 9 O -0.460 6.460 10 N -0.344 5.344 11 C 0.006 3.994 12 C -0.087 4.087 13 N -0.258 5.258 14 C 0.081 3.919 15 C -0.557 4.557 16 H 0.092 0.908 17 C -0.200 4.200 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.178 1.178 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.083 4.083 24 C -0.003 4.003 25 H 0.174 0.826 26 H 0.107 0.893 27 H 0.183 0.817 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.173 0.827 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.023 0.977 37 H 0.022 0.978 38 H -0.028 1.028 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.314 -25.513 -8.166 26.790 hybrid contribution -0.855 1.610 0.220 1.836 sum -1.169 -23.903 -7.946 25.216 Atomic orbital electron populations 1.25034 0.95257 1.04091 0.87800 1.22996 0.96689 0.96359 1.08597 1.19548 0.82433 0.90840 0.74787 1.90775 1.69015 1.35588 1.52622 1.47518 1.05530 1.07658 1.72139 1.22187 0.98294 0.83628 1.02733 1.21521 1.00768 0.88246 0.92420 1.21773 0.76328 0.80312 0.93206 1.90635 1.52427 1.55238 1.47690 1.48350 1.55843 1.22028 1.08167 1.21558 1.01912 0.92576 0.83343 1.22440 0.95129 0.94222 0.96891 1.62057 1.57693 1.03925 1.02173 1.19396 0.92706 0.83701 0.96121 1.21486 1.22121 0.91248 1.20883 0.90821 1.26006 0.96947 0.99422 0.97665 1.70120 1.38328 1.10098 1.39396 0.85258 0.78292 0.78285 0.78319 1.17833 1.20790 1.20695 1.22413 0.96657 0.96950 0.92284 1.22080 1.01186 0.87655 0.89337 0.82615 0.89291 0.81669 0.93002 0.87801 0.88270 0.87653 0.82677 0.89225 0.89933 0.89975 0.97674 0.97757 1.02806 0.92755 0.97613 0.88993 0.88275 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 14.31 66.65 0.95 -0.28 16 2 C -0.23 -3.80 9.21 23.43 0.22 -3.58 16 3 C 0.53 13.95 7.62 86.57 0.66 14.61 16 4 O -0.60 -21.71 15.80 -4.08 -0.06 -21.78 16 5 N -0.60 -12.53 2.36 -855.43 -2.02 -14.55 16 6 C 0.07 0.80 10.20 127.77 1.30 2.10 16 7 C 0.10 2.06 4.30 85.63 0.37 2.43 16 8 C 0.50 14.69 7.78 87.66 0.68 15.37 16 9 O -0.58 -21.43 15.89 -3.03 -0.05 -21.48 16 10 N -0.61 -17.94 3.01 -818.05 -2.46 -20.40 16 11 C 0.13 4.11 6.59 86.35 0.57 4.68 16 12 C 0.04 1.63 5.62 86.38 0.49 2.12 16 13 N -0.53 -22.94 4.62 -899.92 -4.16 -27.09 16 14 C 0.21 11.15 4.72 85.56 0.40 11.56 16 15 C -0.52 -28.75 8.41 25.60 0.22 -28.53 16 16 H 0.07 3.87 7.13 -2.91 -0.02 3.85 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 18 N -0.94 -56.98 13.29 21.45 0.28 -56.69 16 19 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 20 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.05 1.69 5.45 86.37 0.47 2.16 16 24 C 0.12 3.06 6.50 86.33 0.56 3.62 16 25 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 26 H 0.09 1.78 7.49 -2.91 -0.02 1.75 16 27 H 0.17 1.42 6.22 -2.91 -0.02 1.41 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.56 6.09 -2.39 -0.01 0.55 16 30 H 0.10 0.59 7.89 -2.39 -0.02 0.57 16 31 H 0.11 2.51 6.94 -2.39 -0.02 2.49 16 32 H 0.16 1.77 7.75 -2.39 -0.02 1.75 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.08 2.71 7.07 -2.39 -0.02 2.70 16 35 H 0.08 3.09 7.99 -2.39 -0.02 3.07 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.00 0.25 7.97 -2.38 -0.02 0.23 16 38 H -0.05 -2.75 8.12 -2.39 -0.02 -2.77 16 39 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 40 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.09 3.50 6.67 -2.39 -0.02 3.48 16 42 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.12 2.12 6.02 -2.39 -0.01 2.11 16 Total: -1.00 -82.82 352.44 1.90 -80.91 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.00 Total: 9.08 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 7.35 Total: 26.57 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -8.36 Total: -118.74 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.11 Total: -43.26 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -82.82 1.90 -80.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827478177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.010 kcal (2) G-P(sol) polarization free energy of solvation -82.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds