Wall clock time and date at job start Tue Mar 31 2020 03:16:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.21287 * 120.00201 * 2 1
4 4 N 1.34774 * 120.00230 * 180.02562 * 2 1 3
5 5 C 1.45981 * 125.22888 * 359.29826 * 4 2 1
6 6 C 1.53986 * 107.06916 * 198.06076 * 5 4 2
7 7 H 1.09004 * 112.79570 * 210.32794 * 6 5 4
8 8 C 1.53669 * 109.29985 * 83.30625 * 6 5 4
9 9 N 1.46659 * 107.96868 * 233.06127 * 8 6 5
10 10 C 1.34781 * 125.33069 * 179.29642 * 9 8 6
11 11 O 1.21587 * 119.99910 * 179.97438 * 10 9 8
12 12 N 1.34774 * 120.00572 * 359.97438 * 10 9 8
13 13 C 1.46498 * 120.00323 * 180.02562 * 12 10 9
14 14 C 1.53001 * 109.46710 * 180.02562 * 13 12 10
15 15 C 1.50701 * 109.46834 * 179.97438 * 14 13 12
16 16 H 1.08010 * 120.00200 * 0.02562 * 15 14 13
17 17 C 1.37874 * 120.00338 * 180.02562 * 15 14 13
18 18 N 1.31517 * 120.00001 * 359.97438 * 17 15 14
19 19 Si 1.86802 * 120.00326 * 180.02562 * 17 15 14
20 20 H 1.48503 * 109.47041 * 59.99572 * 19 17 15
21 21 H 1.48500 * 109.47334 * 179.97438 * 19 17 15
22 22 H 1.48503 * 109.47149 * 299.99751 * 19 17 15
23 23 C 1.46754 * 109.33339 * 359.28614 * 9 8 6
24 24 C 1.53984 * 106.67578 * 18.45562 * 23 9 8
25 25 H 1.08994 * 112.80035 * 209.36643 * 24 23 9
26 26 C 1.46660 * 125.33637 * 180.02562 * 4 2 1
27 27 H 1.08997 * 109.46837 * 239.99916 * 1 2 3
28 28 H 1.09003 * 109.47154 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.47188 * 119.99402 * 1 2 3
30 30 H 1.08994 * 109.02158 * 79.07330 * 5 4 2
31 31 H 1.09001 * 110.62374 * 317.93168 * 5 4 2
32 32 H 1.09002 * 109.76947 * 352.68778 * 8 6 5
33 33 H 1.08997 * 109.76946 * 113.43046 * 8 6 5
34 34 H 0.97007 * 119.99396 * 0.02562 * 12 10 9
35 35 H 1.08991 * 109.46884 * 299.99926 * 13 12 10
36 36 H 1.08998 * 109.47094 * 60.00655 * 13 12 10
37 37 H 1.08994 * 109.47781 * 299.99842 * 14 13 12
38 38 H 1.08999 * 109.47589 * 60.00594 * 14 13 12
39 39 H 0.96998 * 120.00408 * 180.02562 * 18 17 15
40 40 H 1.08996 * 110.02033 * 259.14665 * 23 9 8
41 41 H 1.09005 * 110.01802 * 137.75344 * 23 9 8
42 42 H 1.09001 * 109.76986 * 59.69742 * 26 4 2
43 43 H 1.09001 * 109.76631 * 298.94890 * 26 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0504 0.0000
4 7 2.1809 -1.1671 -0.0005
5 6 1.5694 -2.4926 0.0135
6 6 2.6556 -3.4868 0.4640
7 1 2.5233 -4.4800 0.0348
8 6 2.7336 -3.4928 1.9987
9 7 4.1287 -3.2521 2.3818
10 6 4.5873 -3.1740 3.6467
11 8 5.7680 -2.9707 3.8539
12 7 3.7371 -3.3211 4.6821
13 6 4.2355 -3.2355 6.0571
14 6 3.0750 -3.4369 7.0336
15 6 3.5877 -3.3495 8.4480
16 1 4.6365 -3.1680 8.6320
17 6 2.7182 -3.5012 9.5071
18 7 1.4412 -3.7216 9.2832
19 14 3.3537 -3.3921 11.2604
20 1 3.9622 -2.0561 11.4841
21 1 2.2274 -3.5877 12.2082
22 1 4.3767 -4.4454 11.4825
23 6 4.9471 -3.1101 1.1719
24 6 3.9773 -2.8029 0.0160
25 1 4.3391 -3.1649 -0.9464
26 6 3.6412 -1.3035 0.0000
27 1 -0.3633 -0.5138 0.8900
28 1 -0.3633 1.0277 -0.0005
29 1 -0.3633 -0.5137 -0.8900
30 1 1.2325 -2.7391 -0.9934
31 1 0.7282 -2.5201 0.7061
32 1 2.0990 -2.7042 2.4032
33 1 2.4081 -4.4603 2.3806
34 1 2.7951 -3.4836 4.5169
35 1 4.9856 -4.0092 6.2203
36 1 4.6828 -2.2552 6.2210
37 1 2.3244 -2.6635 6.8705
38 1 2.6280 -4.4174 6.8696
39 1 0.8293 -3.8279 10.0283
40 1 5.4830 -4.0381 0.9728
41 1 5.6540 -2.2893 1.2939
42 1 4.0560 -0.8230 0.8861
43 1 4.0547 -0.8428 -0.8972
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000883564144.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:16
Heat of formation + Delta-G solvation = -65.580130 kcal
Electronic energy + Delta-G solvation = -24006.340970 eV
Core-core repulsion = 20472.177941 eV
Total energy + Delta-G solvation = -3534.163029 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.24113 -39.57523 -38.32286 -35.48535 -34.79307 -32.91544 -32.01523 -31.19125
-30.07304 -29.16733 -26.64334 -25.74114 -24.36389 -22.47018 -21.07161 -20.47722
-20.02262 -19.56651 -17.91092 -17.36936 -16.91701 -16.38938 -15.78991 -15.70119
-15.26502 -14.75039 -14.53183 -14.14053 -13.91217 -13.65636 -13.62037 -13.36812
-13.06039 -12.89216 -12.76537 -12.58413 -12.37676 -12.27893 -12.23542 -11.45447
-11.35386 -11.21898 -11.15246 -11.01228 -10.64696 -10.31947 -10.15793 -9.96952
-9.56767 -9.28242 -8.97012 -8.75073 -8.45905 -8.21248 -6.09151 -4.11788
2.36119 2.68105 2.82611 3.31982 3.35495 3.39332 3.50828 3.68497
3.98588 4.08184 4.35353 4.46329 4.50794 4.66861 4.72872 4.80927
4.94515 4.98320 5.02028 5.13784 5.25200 5.28011 5.37274 5.44837
5.50934 5.56982 5.60771 5.65397 5.74906 5.95889 6.16020 6.39139
6.41173 6.76329 6.97978 7.17850 7.23319 7.55080 7.62455 7.87681
7.89684 8.23873 8.35552 8.91073 8.96513 9.52955 11.02521
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.018715 B = 0.003171 C = 0.002923
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1495.788206 B = 8828.370956 C = 9578.346994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.525 3.475
3 O -0.543 6.543
4 N -0.616 5.616
5 C 0.107 3.893
6 C -0.104 4.104
7 H 0.116 0.884
8 C 0.106 3.894
9 N -0.638 5.638
10 C 0.717 3.283
11 O -0.593 6.593
12 N -0.735 5.735
13 C 0.139 3.861
14 C 0.014 3.986
15 C -0.521 4.521
16 H 0.059 0.941
17 C 0.059 3.941
18 N -0.895 5.895
19 Si 0.897 3.103
20 H -0.275 1.275
21 H -0.287 1.287
22 H -0.275 1.275
23 C 0.135 3.865
24 C -0.108 4.108
25 H 0.113 0.887
26 C 0.113 3.887
27 H 0.090 0.910
28 H 0.093 0.907
29 H 0.087 0.913
30 H 0.072 0.928
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.071 0.929
34 H 0.392 0.608
35 H 0.055 0.945
36 H 0.054 0.946
37 H 0.021 0.979
38 H 0.022 0.978
39 H 0.262 0.738
40 H 0.068 0.932
41 H 0.079 0.921
42 H 0.073 0.927
43 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.808 -0.899 -24.218 24.532
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.314 3.686
3 O -0.420 6.420
4 N -0.351 5.351
5 C -0.017 4.017
6 C -0.124 4.124
7 H 0.134 0.866
8 C -0.018 4.018
9 N -0.379 5.379
10 C 0.419 3.581
11 O -0.471 6.471
12 N -0.388 5.388
13 C 0.017 3.983
14 C -0.023 4.023
15 C -0.560 4.560
16 H 0.078 0.922
17 C -0.142 4.142
18 N -0.534 5.534
19 Si 0.725 3.275
20 H -0.201 1.201
21 H -0.212 1.212
22 H -0.201 1.201
23 C 0.011 3.989
24 C -0.127 4.127
25 H 0.131 0.869
26 C -0.010 4.010
27 H 0.108 0.892
28 H 0.111 0.889
29 H 0.106 0.894
30 H 0.090 0.910
31 H 0.101 0.899
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.225 0.775
35 H 0.073 0.927
36 H 0.073 0.927
37 H 0.040 0.960
38 H 0.040 0.960
39 H 0.072 0.928
40 H 0.086 0.914
41 H 0.097 0.903
42 H 0.092 0.908
43 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.787 -0.110 -23.827 23.989
hybrid contribution -0.335 -0.172 0.930 1.003
sum -3.123 -0.283 -22.897 23.110
Atomic orbital electron populations
1.21913 0.91111 1.05633 1.04267 1.20542 0.90465 0.81903 0.75656
1.90750 1.70870 1.30661 1.49726 1.48093 1.07178 1.05919 1.73907
1.21906 0.96168 0.81848 1.01741 1.22894 0.94552 0.99751 0.95187
0.86567 1.21849 0.84350 1.01572 0.93989 1.47275 1.08517 1.77691
1.04374 1.15554 0.85168 0.78291 0.79091 1.90902 1.15217 1.57423
1.83546 1.45546 1.10682 1.76272 1.06316 1.21621 0.98946 1.00670
0.77086 1.19311 0.92507 0.97582 0.92933 1.21016 0.94942 1.49692
0.90360 0.92248 1.24986 0.94819 0.94955 0.99464 1.69944 1.02698
1.48972 1.31781 0.86566 0.78324 0.78804 0.83807 1.20089 1.21245
1.20093 1.21625 0.93071 1.02062 0.82103 1.22944 0.95612 0.94505
0.99655 0.86869 1.21828 0.80870 0.95480 1.02816 0.89166 0.88857
0.89427 0.90989 0.89921 0.91485 0.91055 0.77456 0.92687 0.92740
0.96034 0.95998 0.92813 0.91420 0.90302 0.90826 0.91091
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.12 9.36 36.01 0.34 -0.78 16
2 C 0.52 5.75 7.94 -10.99 -0.09 5.67 16
3 O -0.54 -8.60 17.39 5.55 0.10 -8.50 16
4 N -0.62 -5.55 3.29 -172.95 -0.57 -6.12 16
5 C 0.11 0.58 5.71 -3.81 -0.02 0.56 16
6 C -0.10 -0.61 4.09 -88.47 -0.36 -0.98 16
7 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16
8 C 0.11 0.98 5.53 -3.61 -0.02 0.96 16
9 N -0.64 -8.40 3.31 -178.06 -0.59 -8.99 16
10 C 0.72 13.07 8.47 -86.92 -0.74 12.33 16
11 O -0.59 -13.16 16.62 5.29 0.09 -13.07 16
12 N -0.73 -13.47 5.51 -65.23 -0.36 -13.83 16
13 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16
14 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16
15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16
16 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16
17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16
18 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16
19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16
20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
23 C 0.14 1.41 6.06 -3.39 -0.02 1.39 16
24 C -0.11 -0.75 4.05 -88.47 -0.36 -1.10 16
25 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16
26 C 0.11 1.06 6.28 -3.60 -0.02 1.04 16
27 H 0.09 0.48 7.86 -51.93 -0.41 0.08 16
28 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16
29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.08 0.37 7.26 -51.93 -0.38 -0.01 16
32 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16
33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.39 6.27 7.43 -40.82 -0.30 5.96 16
35 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16
36 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16
37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
41 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16
42 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16
43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
LS Contribution 352.08 15.07 5.31 5.31
Total: -1.00 -36.45 352.08 -9.06 -45.52
By element:
Atomic # 1 Polarization: 6.49 SS G_CDS: -6.88 Total: -0.40 kcal
Atomic # 6 Polarization: 10.89 SS G_CDS: -1.87 Total: 9.02 kcal
Atomic # 7 Polarization: -53.54 SS G_CDS: -0.78 Total: -54.32 kcal
Atomic # 8 Polarization: -21.76 SS G_CDS: 0.18 Total: -21.58 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -36.45 -9.06 -45.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000883564144.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.061 kcal
(2) G-P(sol) polarization free energy of solvation -36.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.516 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds