Wall clock time and date at job start Tue Mar 31 2020 03:16:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.21287 * 120.00201 * 2 1
4 4 N 1.34774 * 120.00230 * 180.02562 * 2 1 3
5 5 C 1.45981 * 125.22888 * 359.29826 * 4 2 1
6 6 C 1.53986 * 107.06916 * 198.06076 * 5 4 2
7 7 H 1.09004 * 112.79570 * 210.32794 * 6 5 4
8 8 C 1.53669 * 109.29985 * 83.30625 * 6 5 4
9 9 N 1.46659 * 107.96868 * 233.06127 * 8 6 5
10 10 C 1.34781 * 125.33069 * 179.29642 * 9 8 6
11 11 O 1.21587 * 119.99910 * 179.97438 * 10 9 8
12 12 N 1.34774 * 120.00572 * 359.97438 * 10 9 8
13 13 C 1.46498 * 120.00323 * 180.02562 * 12 10 9
14 14 C 1.53001 * 109.46710 * 180.02562 * 13 12 10
15 15 C 1.50701 * 109.46834 * 179.97438 * 14 13 12
16 16 H 1.08010 * 120.00200 * 0.02562 * 15 14 13
17 17 C 1.37874 * 120.00338 * 180.02562 * 15 14 13
18 18 N 1.31517 * 120.00001 * 359.97438 * 17 15 14
19 19 Si 1.86802 * 120.00326 * 180.02562 * 17 15 14
20 20 H 1.48503 * 109.47041 * 59.99572 * 19 17 15
21 21 H 1.48500 * 109.47334 * 179.97438 * 19 17 15
22 22 H 1.48503 * 109.47149 * 299.99751 * 19 17 15
23 23 C 1.46754 * 109.33339 * 359.28614 * 9 8 6
24 24 C 1.53984 * 106.67578 * 18.45562 * 23 9 8
25 25 H 1.08994 * 112.80035 * 209.36643 * 24 23 9
26 26 C 1.46660 * 125.33637 * 180.02562 * 4 2 1
27 27 H 1.08997 * 109.46837 * 239.99916 * 1 2 3
28 28 H 1.09003 * 109.47154 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.47188 * 119.99402 * 1 2 3
30 30 H 1.08994 * 109.02158 * 79.07330 * 5 4 2
31 31 H 1.09001 * 110.62374 * 317.93168 * 5 4 2
32 32 H 1.09002 * 109.76947 * 352.68778 * 8 6 5
33 33 H 1.08997 * 109.76946 * 113.43046 * 8 6 5
34 34 H 0.97007 * 119.99396 * 0.02562 * 12 10 9
35 35 H 1.08991 * 109.46884 * 299.99926 * 13 12 10
36 36 H 1.08998 * 109.47094 * 60.00655 * 13 12 10
37 37 H 1.08994 * 109.47781 * 299.99842 * 14 13 12
38 38 H 1.08999 * 109.47589 * 60.00594 * 14 13 12
39 39 H 0.96998 * 120.00408 * 180.02562 * 18 17 15
40 40 H 1.08996 * 110.02033 * 259.14665 * 23 9 8
41 41 H 1.09005 * 110.01802 * 137.75344 * 23 9 8
42 42 H 1.09001 * 109.76986 * 59.69742 * 26 4 2
43 43 H 1.09001 * 109.76631 * 298.94890 * 26 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0504 0.0000
4 7 2.1809 -1.1671 -0.0005
5 6 1.5694 -2.4926 0.0135
6 6 2.6556 -3.4868 0.4640
7 1 2.5233 -4.4800 0.0348
8 6 2.7336 -3.4928 1.9987
9 7 4.1287 -3.2521 2.3818
10 6 4.5873 -3.1740 3.6467
11 8 5.7680 -2.9707 3.8539
12 7 3.7371 -3.3211 4.6821
13 6 4.2355 -3.2355 6.0571
14 6 3.0750 -3.4369 7.0336
15 6 3.5877 -3.3495 8.4480
16 1 4.6365 -3.1680 8.6320
17 6 2.7182 -3.5012 9.5071
18 7 1.4412 -3.7216 9.2832
19 14 3.3537 -3.3921 11.2604
20 1 3.9622 -2.0561 11.4841
21 1 2.2274 -3.5877 12.2082
22 1 4.3767 -4.4454 11.4825
23 6 4.9471 -3.1101 1.1719
24 6 3.9773 -2.8029 0.0160
25 1 4.3391 -3.1649 -0.9464
26 6 3.6412 -1.3035 0.0000
27 1 -0.3633 -0.5138 0.8900
28 1 -0.3633 1.0277 -0.0005
29 1 -0.3633 -0.5137 -0.8900
30 1 1.2325 -2.7391 -0.9934
31 1 0.7282 -2.5201 0.7061
32 1 2.0990 -2.7042 2.4032
33 1 2.4081 -4.4603 2.3806
34 1 2.7951 -3.4836 4.5169
35 1 4.9856 -4.0092 6.2203
36 1 4.6828 -2.2552 6.2210
37 1 2.3244 -2.6635 6.8705
38 1 2.6280 -4.4174 6.8696
39 1 0.8293 -3.8279 10.0283
40 1 5.4830 -4.0381 0.9728
41 1 5.6540 -2.2893 1.2939
42 1 4.0560 -0.8230 0.8861
43 1 4.0547 -0.8428 -0.8972
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000883564144.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:15
Heat of formation + Delta-G solvation = -92.441953 kcal
Electronic energy + Delta-G solvation = -24007.505786 eV
Core-core repulsion = 20472.177941 eV
Total energy + Delta-G solvation = -3535.327845 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.06876 -40.74310 -39.37638 -36.72869 -36.31370 -34.85418 -33.04404 -31.87619
-31.43239 -30.29578 -27.38125 -27.10025 -25.85841 -23.42574 -22.83860 -21.20746
-21.13844 -20.47199 -19.11878 -18.49551 -18.11501 -17.71572 -16.99873 -16.79915
-16.51563 -16.29796 -15.90643 -15.37360 -15.01581 -14.88754 -14.51257 -14.34914
-14.26518 -13.80373 -13.69508 -13.48928 -13.36843 -13.23466 -13.16109 -12.97659
-12.92560 -12.54419 -12.26027 -12.09116 -11.93433 -11.81810 -11.68867 -11.53354
-11.24970 -11.04033 -10.61108 -10.22028 -9.70851 -9.49527 -8.24969 -6.35439
1.41219 1.43866 1.51155 1.56352 1.60525 2.02589 2.07203 2.40247
2.95147 3.09751 3.24724 3.38766 3.45685 3.85077 4.01209 4.09669
4.26366 4.39335 4.45130 4.46635 4.48620 4.53275 4.61529 4.62543
4.69494 4.74140 4.81844 4.83686 4.92140 5.00362 5.05638 5.15160
5.24098 5.27267 5.40518 5.49264 5.55936 5.77085 5.99420 6.15523
6.48557 6.76661 6.94186 7.09710 7.33774 7.50101 8.86793
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.018715 B = 0.003171 C = 0.002923
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1495.788206 B = 8828.370956 C = 9578.346994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.511 3.489
3 O -0.608 6.608
4 N -0.615 5.615
5 C 0.101 3.899
6 C -0.088 4.088
7 H 0.159 0.841
8 C 0.094 3.906
9 N -0.634 5.634
10 C 0.711 3.289
11 O -0.640 6.640
12 N -0.730 5.730
13 C 0.160 3.840
14 C 0.027 3.973
15 C -0.550 4.550
16 H 0.058 0.942
17 C 0.010 3.990
18 N -0.925 5.925
19 Si 0.965 3.035
20 H -0.271 1.271
21 H -0.279 1.279
22 H -0.268 1.268
23 C 0.126 3.874
24 C -0.087 4.087
25 H 0.154 0.846
26 C 0.108 3.892
27 H 0.106 0.894
28 H 0.085 0.915
29 H 0.120 0.880
30 H 0.109 0.891
31 H 0.098 0.902
32 H 0.058 0.942
33 H 0.086 0.914
34 H 0.404 0.596
35 H 0.045 0.955
36 H 0.038 0.962
37 H 0.006 0.994
38 H 0.012 0.988
39 H 0.267 0.733
40 H 0.083 0.917
41 H 0.053 0.947
42 H 0.030 0.970
43 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.269 -2.787 -25.844 26.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.303 3.697
3 O -0.490 6.490
4 N -0.348 5.348
5 C -0.021 4.021
6 C -0.106 4.106
7 H 0.176 0.824
8 C -0.029 4.029
9 N -0.372 5.372
10 C 0.413 3.587
11 O -0.522 6.522
12 N -0.385 5.385
13 C 0.036 3.964
14 C -0.010 4.010
15 C -0.588 4.588
16 H 0.076 0.924
17 C -0.189 4.189
18 N -0.564 5.564
19 Si 0.789 3.211
20 H -0.196 1.196
21 H -0.204 1.204
22 H -0.193 1.193
23 C 0.003 3.997
24 C -0.106 4.106
25 H 0.172 0.828
26 C -0.015 4.015
27 H 0.125 0.875
28 H 0.104 0.896
29 H 0.138 0.862
30 H 0.127 0.873
31 H 0.116 0.884
32 H 0.077 0.923
33 H 0.104 0.896
34 H 0.240 0.760
35 H 0.064 0.936
36 H 0.057 0.943
37 H 0.025 0.975
38 H 0.030 0.970
39 H 0.075 0.925
40 H 0.101 0.899
41 H 0.071 0.929
42 H 0.049 0.951
43 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -4.304 -2.052 -25.517 25.958
hybrid contribution 0.115 0.412 1.383 1.448
sum -4.189 -1.640 -24.134 24.549
Atomic orbital electron populations
1.21926 0.87544 1.05971 1.06508 1.21430 0.92254 0.81467 0.74553
1.90715 1.72378 1.33041 1.52905 1.48246 1.07029 1.07087 1.72449
1.22252 0.96115 0.79382 1.04310 1.23018 0.93652 1.01843 0.92135
0.82387 1.22229 0.81608 1.01993 0.97047 1.47304 1.10904 1.75772
1.03221 1.15706 0.84417 0.78126 0.80486 1.90859 1.17223 1.59481
1.84686 1.45217 1.11381 1.76701 1.05202 1.21094 0.97382 0.99352
0.78579 1.19096 0.92825 0.96267 0.92849 1.21425 0.95177 1.50185
0.92035 0.92414 1.25842 0.94993 0.94301 1.03778 1.70041 1.03761
1.49390 1.33216 0.85509 0.78031 0.79038 0.78535 1.19568 1.20370
1.19254 1.21882 0.93655 1.01910 0.82227 1.22936 0.95365 0.92543
0.99800 0.82821 1.21803 0.81589 0.97270 1.00838 0.87541 0.89648
0.86152 0.87345 0.88375 0.92342 0.89551 0.76005 0.93617 0.94329
0.97549 0.97010 0.92462 0.89910 0.92874 0.95139 0.91041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.77 9.36 71.24 0.67 -1.10 16
2 C 0.51 10.96 7.94 87.66 0.70 11.66 16
3 O -0.61 -20.26 17.39 -3.05 -0.05 -20.32 16
4 N -0.61 -10.01 3.29 -819.47 -2.70 -12.71 16
5 C 0.10 0.65 5.71 86.81 0.50 1.14 16
6 C -0.09 -0.63 4.09 -9.40 -0.04 -0.67 16
7 H 0.16 0.03 8.14 -2.38 -0.02 0.02 16
8 C 0.09 1.50 5.53 86.57 0.48 1.98 16
9 N -0.63 -16.37 3.31 -835.53 -2.77 -19.14 16
10 C 0.71 26.52 8.47 179.05 1.52 28.04 16
11 O -0.64 -29.62 16.62 -3.99 -0.07 -29.69 16
12 N -0.73 -27.35 5.51 -478.55 -2.64 -29.99 16
13 C 0.16 7.27 5.61 86.38 0.48 7.76 16
14 C 0.03 1.40 5.09 29.85 0.15 1.55 16
15 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16
16 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16
17 C 0.01 0.56 5.46 84.65 0.46 1.02 16
18 N -0.92 -54.13 13.29 21.45 0.28 -53.84 16
19 Si 0.96 43.90 29.54 68.60 2.03 45.93 16
20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16
22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16
23 C 0.13 2.52 6.06 86.66 0.53 3.04 16
24 C -0.09 -0.95 4.05 -9.40 -0.04 -0.99 16
25 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16
26 C 0.11 1.99 6.28 86.58 0.54 2.54 16
27 H 0.11 0.84 7.86 -2.39 -0.02 0.82 16
28 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16
29 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16
30 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16
31 H 0.10 0.41 7.26 -2.39 -0.02 0.39 16
32 H 0.06 1.06 7.47 -2.39 -0.02 1.04 16
33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
34 H 0.40 12.96 7.43 -92.70 -0.69 12.27 16
35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
38 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16
39 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16
40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
41 H 0.05 1.34 7.78 -2.38 -0.02 1.32 16
42 H 0.03 0.82 7.52 -2.39 -0.02 0.80 16
43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
Total: -1.00 -84.57 352.08 0.58 -83.99
By element:
Atomic # 1 Polarization: 10.47 SS G_CDS: 0.31 Total: 10.79 kcal
Atomic # 6 Polarization: 18.80 SS G_CDS: 6.18 Total: 24.98 kcal
Atomic # 7 Polarization: -107.86 SS G_CDS: -7.82 Total: -115.68 kcal
Atomic # 8 Polarization: -49.89 SS G_CDS: -0.12 Total: -50.01 kcal
Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal
Total: -84.57 0.58 -83.99 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000883564144.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.456 kcal
(2) G-P(sol) polarization free energy of solvation -84.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds