Wall clock time and date at job start Tue Mar 31 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21278 * 120.00020 * 2 1 4 4 N 1.34770 * 119.99665 * 180.26352 * 2 1 3 5 5 C 1.47024 * 125.65056 * 359.42496 * 4 2 1 6 6 C 1.54331 * 107.26522 * 178.84250 * 5 4 2 7 7 C 1.55153 * 103.02280 * 338.13963 * 6 5 4 8 8 H 1.08996 * 111.00842 * 277.23010 * 7 6 5 9 9 C 1.50706 * 111.03741 * 153.39518 * 7 6 5 10 10 O 1.21277 * 119.99810 * 332.86900 * 9 7 6 11 11 N 1.34776 * 120.00141 * 152.87104 * 9 7 6 12 12 C 1.47424 * 125.64632 * 4.75922 * 11 9 7 13 13 C 1.55124 * 104.72266 * 155.81731 * 12 11 9 14 14 C 1.55161 * 101.48843 * 37.29579 * 13 12 11 15 15 H 1.09001 * 110.71968 * 82.68976 * 14 13 12 16 16 N 1.46495 * 110.87388 * 205.90013 * 14 13 12 17 17 C 1.36938 * 120.00161 * 268.60422 * 16 14 13 18 18 H 1.08004 * 119.99756 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00183 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00244 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47440 * 89.99927 * 21 19 17 23 23 H 1.48499 * 109.47384 * 209.99999 * 21 19 17 24 24 H 1.48510 * 109.47123 * 329.99807 * 21 19 17 25 25 C 1.47015 * 125.65065 * 185.06611 * 11 9 7 26 26 C 1.47429 * 125.64688 * 179.72479 * 4 2 1 27 27 H 1.09008 * 109.46975 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47279 * 120.00398 * 1 2 3 29 29 H 1.09002 * 109.47165 * 240.01067 * 1 2 3 30 30 H 1.09001 * 109.88177 * 298.38780 * 5 4 2 31 31 H 1.09000 * 109.88232 * 59.55336 * 5 4 2 32 32 H 1.09000 * 110.85113 * 219.67133 * 6 5 4 33 33 H 1.09001 * 110.67124 * 96.52285 * 6 5 4 34 34 H 1.08999 * 110.37009 * 274.74668 * 12 11 9 35 35 H 1.08998 * 110.36662 * 37.06994 * 12 11 9 36 36 H 1.08998 * 111.19477 * 279.19085 * 13 12 11 37 37 H 1.08998 * 110.90937 * 155.27478 * 13 12 11 38 38 H 0.96999 * 119.99836 * 88.61363 * 16 14 13 39 39 H 0.96998 * 120.00792 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.88580 * 300.44527 * 25 11 9 41 41 H 1.09007 * 109.88223 * 61.60435 * 25 11 9 42 42 H 1.08999 * 110.36620 * 322.93700 * 26 4 2 43 43 H 1.08995 * 110.36589 * 85.15168 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0054 5 6 1.5746 -2.5066 0.0005 6 6 2.7278 -3.5315 -0.0389 7 6 3.9054 -2.7103 -0.6274 8 1 3.8513 -2.6742 -1.7154 9 6 5.2314 -3.2645 -0.1736 10 8 5.3109 -3.8611 0.8792 11 7 6.3288 -3.0969 -0.9378 12 6 6.3964 -2.3122 -2.1840 13 6 7.8897 -1.9145 -2.3190 14 6 8.5982 -3.1910 -1.7933 15 1 8.6746 -3.9414 -2.5802 16 7 9.9225 -2.8692 -1.2561 17 6 11.0229 -2.9228 -2.0693 18 1 10.9143 -3.2019 -3.1070 19 6 12.2778 -2.6184 -1.5601 20 7 12.4102 -2.2788 -0.2955 21 14 13.7787 -2.6908 -2.6698 22 1 13.9889 -1.3653 -3.3053 23 1 14.9736 -3.0483 -1.8637 24 1 13.5669 -3.7167 -3.7226 25 6 7.6552 -3.6717 -0.6702 26 6 3.6479 -1.3123 -0.0118 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 -0.3633 -0.5137 0.8901 30 1 0.9856 -2.6430 0.9075 31 1 0.9409 -2.6305 -0.8777 32 1 2.4795 -4.3702 -0.6893 33 1 2.9659 -3.8816 0.9655 34 1 6.0853 -2.9208 -3.0330 35 1 5.7728 -1.4217 -2.1058 36 1 8.1258 -1.0520 -1.6958 37 1 8.1491 -1.7246 -3.3605 38 1 10.0199 -2.6183 -0.3241 39 1 13.2872 -2.0664 0.0606 40 1 8.0218 -3.3242 0.2957 41 1 7.5958 -4.7601 -0.6766 42 1 4.1031 -0.5368 -0.6278 43 1 4.0381 -1.2659 1.0049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970585977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:17 Heat of formation + Delta-G solvation = -52.129386 kcal Electronic energy + Delta-G solvation = -23857.617778 eV Core-core repulsion = 20324.038017 eV Total energy + Delta-G solvation = -3533.579761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.69541 -39.58524 -37.82416 -36.87312 -34.18384 -32.52500 -31.50193 -30.17242 -29.61400 -29.27795 -27.61778 -24.54659 -23.66531 -22.93612 -21.84286 -20.06595 -19.72367 -18.95071 -17.66324 -17.42290 -17.26790 -16.17432 -15.88034 -15.62166 -15.11756 -14.67845 -14.61709 -13.93100 -13.68088 -13.57726 -13.38445 -13.25023 -13.12624 -12.83213 -12.60807 -12.51440 -12.39196 -12.01333 -11.97193 -11.71051 -11.44994 -11.22824 -11.15381 -10.87057 -10.74115 -10.36786 -10.21928 -10.12043 -9.82815 -9.72898 -9.01598 -8.99992 -8.48248 -7.08005 -5.84557 -3.15658 2.32593 2.46537 2.67191 3.10281 3.39460 3.44614 3.46590 4.05083 4.13276 4.45104 4.51958 4.53198 4.72224 4.86757 4.87790 4.91402 4.97931 5.00873 5.14294 5.25049 5.29835 5.39948 5.43954 5.51415 5.54315 5.54842 5.61969 5.72289 5.76981 5.90470 5.93113 6.09967 6.20548 6.32980 6.50948 6.56530 6.85501 7.16583 7.62031 7.63676 7.84386 8.19069 8.32586 9.44067 9.97996 10.32478 11.37546 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030025 B = 0.002852 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.326262 B = 9815.962435 C =10224.072872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.525 3.475 3 O -0.543 6.543 4 N -0.621 5.621 5 C 0.102 3.898 6 C -0.117 4.117 7 C -0.121 4.121 8 H 0.104 0.896 9 C 0.537 3.463 10 O -0.540 6.540 11 N -0.609 5.609 12 C 0.096 3.904 13 C -0.155 4.155 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.715 5.715 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.099 3.901 26 C 0.122 3.878 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.519 -1.240 -2.842 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.421 6.421 4 N -0.356 5.356 5 C -0.021 4.021 6 C -0.155 4.155 7 C -0.143 4.143 8 H 0.122 0.878 9 C 0.324 3.676 10 O -0.417 6.417 11 N -0.342 5.342 12 C -0.027 4.027 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.085 0.915 16 N -0.355 5.355 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.024 4.024 26 C -0.001 4.001 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.221 0.779 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.097 -0.958 -2.346 25.224 hybrid contribution 0.910 0.045 -0.371 0.984 sum -24.187 -0.913 -2.717 24.356 Atomic orbital electron populations 1.21896 0.91173 1.05486 1.04215 1.20530 0.90442 0.81898 0.75686 1.90757 1.70829 1.30594 1.49873 1.48550 1.07142 1.06081 1.73850 1.22102 0.96410 0.81452 1.02104 1.22623 0.91984 0.96971 1.03908 1.22460 0.93330 0.96317 1.02178 0.87757 1.19700 0.84128 0.80220 0.83597 1.90702 1.85459 1.42995 1.22575 1.48494 1.09974 1.50609 1.25171 1.22483 0.99537 0.94680 0.85975 1.23618 0.91809 1.01687 1.02537 1.21183 0.85697 0.93859 0.93242 0.91516 1.42368 1.00453 1.81257 1.11437 1.19215 0.85723 1.39796 0.93030 0.90935 1.24783 0.97719 1.01932 0.96197 1.69660 1.23175 1.52253 1.12575 0.86165 0.82719 0.77680 0.79428 1.21615 1.21711 1.20671 1.22386 0.81345 0.97882 1.00832 1.22041 0.80979 0.95270 1.01851 0.88885 0.89386 0.89389 0.90760 0.90937 0.89348 0.88519 0.91478 0.91309 0.90539 0.90448 0.77911 0.93299 0.90980 0.91594 0.89579 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.51 36.01 0.34 -0.64 16 2 C 0.52 5.60 7.96 -10.99 -0.09 5.51 16 3 O -0.54 -8.39 17.34 5.56 0.10 -8.29 16 4 N -0.62 -5.95 3.33 -170.51 -0.57 -6.51 16 5 C 0.10 0.64 6.49 -3.06 -0.02 0.62 16 6 C -0.12 -0.93 6.31 -24.89 -0.16 -1.08 16 7 C -0.12 -1.22 2.74 -89.62 -0.25 -1.46 16 8 H 0.10 0.87 7.41 -51.93 -0.38 0.49 16 9 C 0.54 7.67 7.01 -10.98 -0.08 7.59 16 10 O -0.54 -9.61 16.21 5.56 0.09 -9.52 16 11 N -0.61 -8.92 3.32 -170.39 -0.57 -9.49 16 12 C 0.10 1.19 6.26 -2.41 -0.02 1.17 16 13 C -0.16 -2.45 6.79 -24.46 -0.17 -2.61 16 14 C 0.17 3.20 3.60 -66.09 -0.24 2.96 16 15 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 16 N -0.71 -17.24 5.23 -51.65 -0.27 -17.51 16 17 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 21 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.10 1.71 6.62 -3.07 -0.02 1.69 16 26 C 0.12 1.36 6.36 -2.53 -0.02 1.34 16 27 H 0.09 0.55 8.12 -51.92 -0.42 0.13 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.94 7.22 -51.93 -0.37 0.57 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.39 10.09 7.56 -40.82 -0.31 9.78 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.40 7.72 -51.93 -0.40 1.00 16 41 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 43 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -34.17 353.80 -8.03 -42.20 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.90 Total: 5.87 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.95 Total: 8.00 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.68 Total: -60.43 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.19 Total: -17.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.17 -8.03 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970585977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.930 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds