Wall clock time and date at job start Tue Mar 31 2020 03:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 120.00094 * 2 1 4 4 H 1.08003 * 120.00197 * 203.87347 * 3 2 1 5 5 C 1.38816 * 119.99935 * 23.87343 * 3 2 1 6 6 N 1.31622 * 119.99709 * 10.89112 * 5 3 2 7 7 Si 1.86798 * 120.00016 * 190.88924 * 5 3 2 8 8 H 1.48500 * 109.46961 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46908 * 120.00006 * 7 5 3 10 10 H 1.48502 * 109.47195 * 239.99982 * 7 5 3 11 11 C 1.46496 * 120.00217 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64587 * 178.31118 * 11 2 1 13 13 C 1.55161 * 110.72052 * 301.45247 * 11 2 1 14 14 C 1.54905 * 101.58561 * 154.04077 * 13 11 2 15 15 N 1.47432 * 104.83003 * 322.99184 * 14 13 11 16 16 C 1.34775 * 125.64667 * 204.08921 * 15 14 13 17 17 O 1.21282 * 120.00085 * 175.02591 * 16 15 14 18 18 C 1.50703 * 119.99888 * 355.02624 * 16 15 14 19 19 H 1.08994 * 109.67076 * 334.83646 * 18 16 15 20 20 C 1.53350 * 109.67151 * 214.33969 * 18 16 15 21 21 C 1.52916 * 108.67389 * 172.73929 * 20 18 16 22 22 N 1.45757 * 110.48785 * 50.74900 * 21 20 18 23 23 C 1.33353 * 124.10819 * 340.94987 * 22 21 20 24 24 O 1.21280 * 118.24313 * 182.21748 * 23 22 21 25 25 C 1.50187 * 123.52133 * 2.14080 * 23 22 21 26 26 C 1.47020 * 108.70066 * 24.35522 * 15 14 13 27 27 H 1.08999 * 109.46917 * 275.09272 * 1 2 3 28 28 H 1.09004 * 109.47255 * 35.08597 * 1 2 3 29 29 H 1.08995 * 109.46900 * 155.09076 * 1 2 3 30 30 H 0.97000 * 119.99838 * 179.97438 * 6 5 3 31 31 H 1.09004 * 111.00167 * 35.96420 * 13 11 2 32 32 H 1.08996 * 111.03812 * 272.13351 * 13 11 2 33 33 H 1.08998 * 110.36804 * 204.15292 * 14 13 11 34 34 H 1.08997 * 110.45904 * 81.87239 * 14 13 11 35 35 H 1.09006 * 109.59938 * 292.49052 * 20 18 16 36 36 H 1.08991 * 109.60553 * 52.81666 * 20 18 16 37 37 H 1.09000 * 109.30465 * 171.06186 * 21 20 18 38 38 H 1.08997 * 109.30029 * 290.64544 * 21 20 18 39 39 H 0.97008 * 117.94004 * 160.92807 * 22 21 20 40 40 H 1.08996 * 109.44775 * 222.37100 * 25 23 22 41 41 H 1.09004 * 109.36290 * 102.62503 * 25 23 22 42 42 H 1.09009 * 109.88135 * 118.13000 * 26 15 14 43 43 H 1.08998 * 109.88269 * 239.28998 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1604 1.2260 -0.3785 5 6 1.5447 2.3367 0.4865 6 7 0.4054 2.2550 1.1407 7 14 2.3474 4.0011 0.2130 8 1 3.6118 3.8222 -0.5450 9 1 1.4269 4.8736 -0.5594 10 1 2.6414 4.6306 1.5255 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 -0.0305 13 6 1.8162 -2.1233 1.2371 14 6 2.1053 -3.5568 0.7262 15 7 1.6992 -3.5415 -0.6910 16 6 1.3359 -4.6181 -1.4156 17 8 0.9334 -4.4772 -2.5510 18 6 1.4297 -5.9972 -0.8151 19 1 2.1835 -6.0040 -0.0279 20 6 1.8100 -7.0091 -1.9028 21 6 2.0763 -8.3618 -1.2414 22 7 0.9711 -8.7273 -0.3643 23 6 0.0774 -7.8605 0.1134 24 8 -0.7763 -8.2741 0.8690 25 6 0.0724 -6.3990 -0.2326 26 6 1.7625 -2.1580 -1.1845 27 1 -0.3633 0.0912 1.0236 28 1 -0.3634 0.8410 -0.5907 29 1 -0.3633 -0.9320 -0.4328 30 1 -0.0171 3.0590 1.4810 31 1 0.7618 -2.0022 1.4856 32 1 2.4473 -1.8782 2.0913 33 1 1.5140 -4.2842 1.2824 34 1 3.1674 -3.7856 0.8140 35 1 0.9906 -7.1054 -2.6152 36 1 2.7069 -6.6696 -2.4207 37 1 2.1913 -9.1236 -2.0126 38 1 2.9931 -8.3018 -0.6549 39 1 0.8798 -9.6597 -0.1125 40 1 -0.1235 -5.8140 0.6659 41 1 -0.7089 -6.2043 -0.9674 42 1 2.4909 -2.0855 -1.9923 43 1 0.7803 -1.8456 -1.5391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971326196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:49 Heat of formation + Delta-G solvation = -46.729197 kcal Electronic energy + Delta-G solvation = -24447.072261 eV Core-core repulsion = 20913.726669 eV Total energy + Delta-G solvation = -3533.345591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -40.87674 -39.59560 -37.67536 -36.41939 -34.84831 -33.41607 -31.59761 -30.02027 -29.79941 -28.10679 -26.10474 -25.57347 -23.92090 -22.77608 -22.32246 -19.68989 -19.23982 -19.05172 -17.58428 -17.14479 -17.07203 -16.55639 -15.85566 -15.63881 -15.06821 -14.82006 -14.50126 -14.27496 -13.75277 -13.68599 -13.39276 -13.34999 -12.84250 -12.60277 -12.41728 -12.13548 -12.02260 -11.80773 -11.49605 -11.32204 -11.30531 -10.99313 -10.82975 -10.61927 -10.49082 -10.35683 -10.26236 -9.91803 -9.90824 -9.56134 -9.42960 -8.62445 -8.41089 -6.84193 -5.79249 -3.28198 2.35770 2.61836 2.97531 3.05609 3.34120 3.41750 3.43387 4.15403 4.30425 4.33385 4.43155 4.47720 4.78729 4.91297 4.94517 4.98027 5.15159 5.24210 5.27447 5.37002 5.45092 5.49370 5.51655 5.58350 5.73236 5.81247 5.85809 5.96054 6.24406 6.34086 6.43400 6.50055 6.59097 6.77805 6.83061 6.98142 7.33139 7.65996 7.71138 7.75253 7.91372 8.22806 8.32759 9.15682 9.77557 10.26442 11.25228 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034855 B = 0.003176 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.128187 B = 8813.815224 C = 9096.319563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.097 3.903 15 N -0.609 5.609 16 C 0.530 3.470 17 O -0.543 6.543 18 C -0.107 4.107 19 H 0.098 0.902 20 C -0.120 4.120 21 C 0.111 3.889 22 N -0.722 5.722 23 C 0.526 3.474 24 O -0.555 6.555 25 C -0.124 4.124 26 C 0.085 3.915 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.001 0.999 30 H 0.253 0.747 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -19.869 -2.546 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.026 4.026 15 N -0.342 5.342 16 C 0.317 3.683 17 O -0.420 6.420 18 C -0.129 4.129 19 H 0.116 0.884 20 C -0.158 4.158 21 C -0.013 4.013 22 N -0.374 5.374 23 C 0.314 3.686 24 O -0.433 6.433 25 C -0.164 4.164 26 C -0.039 4.039 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.235 0.765 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.079 0.921 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.718 -19.616 -2.808 20.370 hybrid contribution 0.430 0.654 0.051 0.784 sum 5.148 -18.962 -2.757 19.841 Atomic orbital electron populations 1.20811 0.82412 0.95611 0.99628 1.43857 1.01886 0.99856 1.85077 1.19259 0.98936 0.85503 1.35377 0.91200 1.25064 0.97667 0.98690 0.97915 1.70072 1.18534 1.27392 1.38886 0.86154 0.78690 0.84065 0.77419 1.20255 1.21571 1.21659 1.21293 0.96339 0.86027 0.90097 0.90359 1.23389 1.03033 0.92326 1.00365 1.22418 0.99439 0.99650 0.81141 1.48554 1.65494 1.07790 1.12370 1.19957 0.77639 0.85039 0.85620 1.90706 1.46378 1.86239 1.18711 1.21397 0.98827 0.93120 0.99520 0.88409 1.21751 1.04292 0.92421 0.97305 1.21432 0.89066 0.97369 0.93431 1.45490 1.29579 1.11805 1.50532 1.20010 0.80486 0.88741 0.79412 1.90781 1.37411 1.78940 1.36187 1.21601 0.97946 0.92611 1.04264 1.22785 1.02436 0.79702 0.98977 0.94833 0.93887 0.98039 0.93681 0.90526 0.90261 0.91359 0.91503 0.89617 0.89149 0.89967 0.91281 0.76495 0.87433 0.87259 0.92078 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.67 59.85 0.46 4.29 16 2 N -0.59 -13.95 2.94 -171.38 -0.50 -14.46 16 3 C -0.26 -6.88 9.61 -15.06 -0.14 -7.03 16 4 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 5 C 0.01 0.15 5.14 -17.43 -0.09 0.06 16 6 N -0.90 -25.63 10.65 55.49 0.59 -25.04 16 7 Si 0.91 21.27 29.57 -169.99 -5.03 16.25 16 8 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.26 3.42 -66.09 -0.23 3.03 16 12 H 0.08 1.45 7.93 -51.93 -0.41 1.03 16 13 C -0.15 -2.39 6.65 -24.58 -0.16 -2.56 16 14 C 0.10 1.18 6.17 -2.53 -0.02 1.17 16 15 N -0.61 -8.88 3.33 -170.51 -0.57 -9.45 16 16 C 0.53 7.46 6.83 -10.98 -0.08 7.38 16 17 O -0.54 -9.62 16.76 5.56 0.09 -9.52 16 18 C -0.11 -1.04 2.02 -91.55 -0.19 -1.22 16 19 H 0.10 0.79 7.14 -51.93 -0.37 0.42 16 20 C -0.12 -0.93 4.86 -26.59 -0.13 -1.06 16 21 C 0.11 0.59 7.17 -4.49 -0.03 0.56 16 22 N -0.72 -5.49 5.45 -61.39 -0.33 -5.83 16 23 C 0.53 5.81 7.71 -11.87 -0.09 5.72 16 24 O -0.55 -8.41 17.78 5.56 0.10 -8.31 16 25 C -0.12 -1.29 5.34 -28.09 -0.15 -1.44 16 26 C 0.09 1.49 6.41 -3.06 -0.02 1.47 16 27 H 0.03 0.87 7.33 -51.93 -0.38 0.48 16 28 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 29 H 0.00 0.03 6.30 -51.93 -0.33 -0.30 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.08 1.35 7.28 -51.93 -0.38 0.98 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.71 7.39 -51.93 -0.38 0.32 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.77 8.08 -51.93 -0.42 0.36 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.40 2.56 8.80 -40.82 -0.36 2.20 16 40 H 0.11 1.12 7.86 -51.93 -0.41 0.71 16 41 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 42 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 43 H 0.07 1.48 6.15 -51.93 -0.32 1.16 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -33.12 341.50 -8.01 -41.13 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.64 Total: -0.28 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.86 Total: 10.36 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.81 Total: -54.77 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.19 Total: -17.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.12 -8.01 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971326196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.603 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds