Wall clock time and date at job start Tue Mar 31 2020 03:56:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36933 * 120.00448 * 2 1
4 4 H 1.07999 * 119.99838 * 154.70514 * 3 2 1
5 5 C 1.38806 * 119.99801 * 334.71361 * 3 2 1
6 6 N 1.31621 * 120.00359 * 4.18553 * 5 3 2
7 7 Si 1.86807 * 120.00051 * 184.18707 * 5 3 2
8 8 H 1.48497 * 109.46776 * 59.99352 * 7 5 3
9 9 H 1.48497 * 109.47457 * 179.97438 * 7 5 3
10 10 H 1.48496 * 109.46883 * 300.00121 * 7 5 3
11 11 C 1.46505 * 119.99737 * 180.02562 * 2 1 3
12 12 H 1.08996 * 110.88615 * 179.29959 * 11 2 1
13 13 C 1.55158 * 111.00344 * 55.41645 * 11 2 1
14 14 C 1.54374 * 102.92241 * 206.45421 * 13 11 2
15 15 N 1.47016 * 107.28452 * 22.13928 * 14 13 11
16 16 C 1.34778 * 125.64686 * 181.05719 * 15 14 13
17 17 O 1.21283 * 120.00284 * 174.91810 * 16 15 14
18 18 C 1.50703 * 120.00060 * 354.91885 * 16 15 14
19 19 H 1.09004 * 109.66536 * 35.13894 * 18 16 15
20 20 C 1.53349 * 109.67484 * 155.67066 * 18 16 15
21 21 C 1.52932 * 108.65944 * 187.27895 * 20 18 16
22 22 N 1.45752 * 110.48301 * 309.21670 * 21 20 18
23 23 C 1.33350 * 124.10475 * 19.12009 * 22 21 20
24 24 O 1.21285 * 118.24880 * 177.77952 * 23 22 21
25 25 C 1.50181 * 123.50866 * 357.74296 * 23 22 21
26 26 C 1.47421 * 108.70869 * 1.09090 * 15 14 13
27 27 H 1.09006 * 109.46951 * 84.47295 * 1 2 3
28 28 H 1.08996 * 109.46547 * 324.47913 * 1 2 3
29 29 H 1.08999 * 109.47435 * 204.47802 * 1 2 3
30 30 H 0.97005 * 119.99993 * 180.02562 * 6 5 3
31 31 H 1.09001 * 110.72228 * 324.79090 * 13 11 2
32 32 H 1.08997 * 110.72108 * 88.06325 * 13 11 2
33 33 H 1.08997 * 109.84392 * 262.73283 * 14 13 11
34 34 H 1.08997 * 110.02957 * 141.65361 * 14 13 11
35 35 H 1.09001 * 109.60067 * 307.02402 * 20 18 16
36 36 H 1.09001 * 109.60030 * 67.51012 * 20 18 16
37 37 H 1.09008 * 109.28919 * 188.91274 * 21 20 18
38 38 H 1.09003 * 109.15234 * 69.43397 * 21 20 18
39 39 H 0.96995 * 117.94525 * 199.08918 * 22 21 20
40 40 H 1.08991 * 109.40355 * 257.46124 * 25 23 22
41 41 H 1.09008 * 109.32823 * 137.67118 * 25 23 22
42 42 H 1.08992 * 110.37110 * 217.03010 * 26 15 14
43 43 H 1.09002 * 110.36305 * 94.70902 * 26 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1498 1.1858 0.0000
4 1 3.1521 1.2306 0.3996
5 6 1.5556 2.3304 -0.5135
6 7 0.3057 2.2952 -0.9245
7 14 2.5298 3.9206 -0.6212
8 1 3.7191 3.7148 -1.4863
9 1 1.6746 4.9868 -1.2018
10 1 2.9705 4.3242 0.7382
11 6 2.1975 -1.2688 -0.0006
12 1 3.2737 -1.0962 -0.0129
13 6 1.7635 -2.1609 -1.1935
14 6 2.0551 -3.5878 -0.6815
15 7 2.0779 -3.5287 0.7873
16 6 2.3213 -4.5670 1.6115
17 8 2.4062 -4.3848 2.8076
18 6 2.4879 -5.9543 1.0469
19 1 2.9879 -5.8992 0.0799
20 6 3.3202 -6.8077 2.0115
21 6 3.6292 -8.1459 1.3388
22 7 2.4086 -8.7487 0.8178
23 6 1.2817 -8.0745 0.5860
24 8 0.3405 -8.6751 0.1124
25 6 1.1154 -6.6113 0.8808
26 6 1.7897 -2.1459 1.2094
27 1 -0.3633 0.0990 -1.0230
28 1 -0.3632 0.8364 0.5971
29 1 -0.3634 -0.9353 0.4258
30 1 -0.1094 3.0950 -1.2837
31 1 0.7010 -2.0360 -1.4021
32 1 2.3600 -1.9387 -2.0783
33 1 3.0227 -3.9241 -1.0541
34 1 1.2728 -4.2705 -1.0130
35 1 4.2518 -6.2922 2.2451
36 1 2.7553 -6.9803 2.9276
37 1 4.0811 -8.8193 2.0672
38 1 4.3280 -7.9810 0.5187
39 1 2.4168 -9.6997 0.6274
40 1 0.5422 -6.4899 1.7998
41 1 0.5836 -6.1354 0.0567
42 1 2.3842 -1.8848 2.0848
43 1 0.7272 -2.0280 1.4225
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000971326199.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:02
Heat of formation + Delta-G solvation = -45.501779 kcal
Electronic energy + Delta-G solvation = -24394.242634 eV
Core-core repulsion = 20860.950268 eV
Total energy + Delta-G solvation = -3533.292366 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.88631 -39.59938 -37.67540 -36.42085 -34.87320 -33.43735 -31.62083 -30.03850
-29.75748 -28.08399 -26.11736 -25.59252 -23.91998 -22.75669 -22.28287 -19.66831
-19.31583 -19.03072 -17.59226 -17.13708 -17.12167 -16.55847 -15.83299 -15.65487
-15.03142 -14.81958 -14.45001 -14.34881 -13.74725 -13.69340 -13.39451 -13.36531
-12.82218 -12.52563 -12.50023 -12.14951 -11.98358 -11.95385 -11.50511 -11.35885
-11.30953 -10.88732 -10.85334 -10.53295 -10.41923 -10.38667 -10.30006 -9.94784
-9.94021 -9.56947 -9.43652 -8.58091 -8.42119 -6.83773 -5.80620 -3.29013
2.34443 2.60960 2.96787 3.05068 3.35079 3.40634 3.41106 4.14745
4.30831 4.32955 4.42466 4.46049 4.78659 4.90793 4.94834 4.97262
5.13214 5.24902 5.26835 5.37255 5.43596 5.50950 5.53602 5.58183
5.73297 5.82395 5.87604 5.96983 6.23707 6.33460 6.42417 6.46922
6.59069 6.78473 6.82997 6.97236 7.42711 7.67659 7.70658 7.79293
7.89988 8.21692 8.34309 9.17456 9.77200 10.26340 11.23510
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.034637 B = 0.003140 C = 0.003034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 808.188877 B = 8914.369127 C = 9225.439017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.163 3.837
2 N -0.589 5.589
3 C -0.262 4.262
4 H 0.070 0.930
5 C 0.009 3.991
6 N -0.907 5.907
7 Si 0.907 3.093
8 H -0.282 1.282
9 H -0.290 1.290
10 H -0.283 1.283
11 C 0.174 3.826
12 H 0.078 0.922
13 C -0.152 4.152
14 C 0.100 3.900
15 N -0.610 5.610
16 C 0.531 3.469
17 O -0.543 6.543
18 C -0.108 4.108
19 H 0.099 0.901
20 C -0.119 4.119
21 C 0.110 3.890
22 N -0.721 5.721
23 C 0.526 3.474
24 O -0.555 6.555
25 C -0.123 4.123
26 C 0.083 3.917
27 H 0.027 0.973
28 H 0.054 0.946
29 H -0.005 1.005
30 H 0.254 0.746
31 H 0.077 0.923
32 H 0.077 0.923
33 H 0.064 0.936
34 H 0.062 0.938
35 H 0.091 0.909
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.069 0.931
39 H 0.400 0.600
40 H 0.108 0.892
41 H 0.107 0.893
42 H 0.073 0.927
43 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.615 -19.206 1.516 20.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.309 5.309
3 C -0.392 4.392
4 H 0.087 0.913
5 C -0.190 4.190
6 N -0.552 5.552
7 Si 0.736 3.264
8 H -0.209 1.209
9 H -0.216 1.216
10 H -0.209 1.209
11 C 0.063 3.937
12 H 0.096 0.904
13 C -0.192 4.192
14 C -0.023 4.023
15 N -0.343 5.343
16 C 0.318 3.682
17 O -0.421 6.421
18 C -0.129 4.129
19 H 0.117 0.883
20 C -0.157 4.157
21 C -0.014 4.014
22 N -0.373 5.373
23 C 0.313 3.687
24 O -0.434 6.434
25 C -0.163 4.163
26 C -0.042 4.042
27 H 0.046 0.954
28 H 0.073 0.927
29 H 0.013 0.987
30 H 0.065 0.935
31 H 0.096 0.904
32 H 0.095 0.905
33 H 0.082 0.918
34 H 0.080 0.920
35 H 0.110 0.890
36 H 0.103 0.897
37 H 0.100 0.900
38 H 0.087 0.913
39 H 0.235 0.765
40 H 0.126 0.874
41 H 0.126 0.874
42 H 0.091 0.909
43 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 6.043 -19.014 1.936 20.045
hybrid contribution 0.529 0.596 -0.294 0.849
sum 6.572 -18.418 1.642 19.625
Atomic orbital electron populations
1.20905 0.82134 0.95553 0.99496 1.43807 1.02016 0.99759 1.85339
1.19181 0.99300 0.86199 1.34483 0.91255 1.25151 0.96502 0.98815
0.98492 1.70079 1.11106 1.28216 1.45779 0.86304 0.79265 0.82842
0.77943 1.20880 1.21562 1.20928 1.21398 0.96347 0.85854 0.90066
0.90410 1.23238 1.03019 0.92333 1.00606 1.22121 1.00718 0.99645
0.79841 1.48512 1.68757 1.09741 1.07280 1.19939 0.76876 0.85223
0.86137 1.90705 1.51341 1.85001 1.15016 1.21404 0.97293 0.92902
1.01333 0.88289 1.21753 1.01675 0.93749 0.98523 1.21452 0.86110
0.95236 0.98606 1.45484 1.12417 1.12980 1.66467 1.20004 0.82008
0.89754 0.76896 1.90781 1.38607 1.69252 1.44738 1.21583 0.97392
0.91468 1.05903 1.23052 1.01294 0.79398 1.00414 0.95423 0.92703
0.98673 0.93541 0.90435 0.90457 0.91800 0.91986 0.89005 0.89718
0.89959 0.91274 0.76500 0.87419 0.87422 0.90881 0.91173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.86 7.63 59.85 0.46 4.32 16
2 N -0.59 -13.98 2.97 -171.03 -0.51 -14.49 16
3 C -0.26 -6.92 9.62 -15.06 -0.14 -7.07 16
4 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16
5 C 0.01 0.24 5.38 -17.43 -0.09 0.15 16
6 N -0.91 -25.48 10.12 55.49 0.56 -24.91 16
7 Si 0.91 21.19 29.56 -169.99 -5.02 16.16 16
8 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
11 C 0.17 3.31 3.54 -65.78 -0.23 3.08 16
12 H 0.08 1.49 7.96 -51.93 -0.41 1.08 16
13 C -0.15 -2.38 6.52 -24.87 -0.16 -2.54 16
14 C 0.10 1.23 6.14 -3.04 -0.02 1.22 16
15 N -0.61 -8.87 3.33 -170.50 -0.57 -9.43 16
16 C 0.53 7.39 6.95 -10.98 -0.08 7.32 16
17 O -0.54 -9.49 16.48 5.55 0.09 -9.40 16
18 C -0.11 -1.04 2.14 -91.56 -0.20 -1.23 16
19 H 0.10 0.80 7.26 -51.93 -0.38 0.42 16
20 C -0.12 -0.93 4.72 -26.59 -0.13 -1.06 16
21 C 0.11 0.59 7.17 -4.48 -0.03 0.56 16
22 N -0.72 -5.43 5.45 -61.38 -0.33 -5.77 16
23 C 0.53 5.70 7.71 -11.87 -0.09 5.61 16
24 O -0.56 -8.29 17.78 5.55 0.10 -8.19 16
25 C -0.12 -1.24 5.34 -28.10 -0.15 -1.39 16
26 C 0.08 1.46 6.48 -2.53 -0.02 1.44 16
27 H 0.03 0.70 7.44 -51.93 -0.39 0.31 16
28 H 0.05 1.43 7.02 -51.93 -0.36 1.07 16
29 H -0.01 -0.11 6.25 -51.93 -0.32 -0.43 16
30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16
31 H 0.08 1.32 7.16 -51.93 -0.37 0.94 16
32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
33 H 0.06 0.66 7.93 -51.93 -0.41 0.25 16
34 H 0.06 0.66 7.61 -51.93 -0.39 0.27 16
35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16
37 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16
38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
39 H 0.40 2.53 8.80 -40.82 -0.36 2.18 16
40 H 0.11 1.14 8.09 -51.93 -0.42 0.72 16
41 H 0.11 1.07 7.61 -51.92 -0.39 0.68 16
42 H 0.07 1.38 7.99 -51.93 -0.41 0.96 16
43 H 0.07 1.32 6.23 -51.93 -0.32 1.00 16
LS Contribution 340.50 15.07 5.13 5.13
Total: -1.00 -32.63 340.50 -8.05 -40.68
By element:
Atomic # 1 Polarization: 6.45 SS G_CDS: -6.61 Total: -0.16 kcal
Atomic # 6 Polarization: 11.27 SS G_CDS: -0.88 Total: 10.39 kcal
Atomic # 7 Polarization: -53.76 SS G_CDS: -0.85 Total: -54.61 kcal
Atomic # 8 Polarization: -17.78 SS G_CDS: 0.19 Total: -17.59 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -32.63 -8.05 -40.68 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000971326199.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.825 kcal
(2) G-P(sol) polarization free energy of solvation -32.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds