Wall clock time and date at job start Tue Mar 31 2020 03:56:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36933 * 120.00448 * 2 1
4 4 H 1.07999 * 119.99838 * 154.70514 * 3 2 1
5 5 C 1.38806 * 119.99801 * 334.71361 * 3 2 1
6 6 N 1.31621 * 120.00359 * 4.18553 * 5 3 2
7 7 Si 1.86807 * 120.00051 * 184.18707 * 5 3 2
8 8 H 1.48497 * 109.46776 * 59.99352 * 7 5 3
9 9 H 1.48497 * 109.47457 * 179.97438 * 7 5 3
10 10 H 1.48496 * 109.46883 * 300.00121 * 7 5 3
11 11 C 1.46505 * 119.99737 * 180.02562 * 2 1 3
12 12 H 1.08996 * 110.88615 * 179.29959 * 11 2 1
13 13 C 1.55158 * 111.00344 * 55.41645 * 11 2 1
14 14 C 1.54374 * 102.92241 * 206.45421 * 13 11 2
15 15 N 1.47016 * 107.28452 * 22.13928 * 14 13 11
16 16 C 1.34778 * 125.64686 * 181.05719 * 15 14 13
17 17 O 1.21283 * 120.00284 * 174.91810 * 16 15 14
18 18 C 1.50703 * 120.00060 * 354.91885 * 16 15 14
19 19 H 1.09004 * 109.66536 * 35.13894 * 18 16 15
20 20 C 1.53349 * 109.67484 * 155.67066 * 18 16 15
21 21 C 1.52932 * 108.65944 * 187.27895 * 20 18 16
22 22 N 1.45752 * 110.48301 * 309.21670 * 21 20 18
23 23 C 1.33350 * 124.10475 * 19.12009 * 22 21 20
24 24 O 1.21285 * 118.24880 * 177.77952 * 23 22 21
25 25 C 1.50181 * 123.50866 * 357.74296 * 23 22 21
26 26 C 1.47421 * 108.70869 * 1.09090 * 15 14 13
27 27 H 1.09006 * 109.46951 * 84.47295 * 1 2 3
28 28 H 1.08996 * 109.46547 * 324.47913 * 1 2 3
29 29 H 1.08999 * 109.47435 * 204.47802 * 1 2 3
30 30 H 0.97005 * 119.99993 * 180.02562 * 6 5 3
31 31 H 1.09001 * 110.72228 * 324.79090 * 13 11 2
32 32 H 1.08997 * 110.72108 * 88.06325 * 13 11 2
33 33 H 1.08997 * 109.84392 * 262.73283 * 14 13 11
34 34 H 1.08997 * 110.02957 * 141.65361 * 14 13 11
35 35 H 1.09001 * 109.60067 * 307.02402 * 20 18 16
36 36 H 1.09001 * 109.60030 * 67.51012 * 20 18 16
37 37 H 1.09008 * 109.28919 * 188.91274 * 21 20 18
38 38 H 1.09003 * 109.15234 * 69.43397 * 21 20 18
39 39 H 0.96995 * 117.94525 * 199.08918 * 22 21 20
40 40 H 1.08991 * 109.40355 * 257.46124 * 25 23 22
41 41 H 1.09008 * 109.32823 * 137.67118 * 25 23 22
42 42 H 1.08992 * 110.37110 * 217.03010 * 26 15 14
43 43 H 1.09002 * 110.36305 * 94.70902 * 26 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1498 1.1858 0.0000
4 1 3.1521 1.2306 0.3996
5 6 1.5556 2.3304 -0.5135
6 7 0.3057 2.2952 -0.9245
7 14 2.5298 3.9206 -0.6212
8 1 3.7191 3.7148 -1.4863
9 1 1.6746 4.9868 -1.2018
10 1 2.9705 4.3242 0.7382
11 6 2.1975 -1.2688 -0.0006
12 1 3.2737 -1.0962 -0.0129
13 6 1.7635 -2.1609 -1.1935
14 6 2.0551 -3.5878 -0.6815
15 7 2.0779 -3.5287 0.7873
16 6 2.3213 -4.5670 1.6115
17 8 2.4062 -4.3848 2.8076
18 6 2.4879 -5.9543 1.0469
19 1 2.9879 -5.8992 0.0799
20 6 3.3202 -6.8077 2.0115
21 6 3.6292 -8.1459 1.3388
22 7 2.4086 -8.7487 0.8178
23 6 1.2817 -8.0745 0.5860
24 8 0.3405 -8.6751 0.1124
25 6 1.1154 -6.6113 0.8808
26 6 1.7897 -2.1459 1.2094
27 1 -0.3633 0.0990 -1.0230
28 1 -0.3632 0.8364 0.5971
29 1 -0.3634 -0.9353 0.4258
30 1 -0.1094 3.0950 -1.2837
31 1 0.7010 -2.0360 -1.4021
32 1 2.3600 -1.9387 -2.0783
33 1 3.0227 -3.9241 -1.0541
34 1 1.2728 -4.2705 -1.0130
35 1 4.2518 -6.2922 2.2451
36 1 2.7553 -6.9803 2.9276
37 1 4.0811 -8.8193 2.0672
38 1 4.3280 -7.9810 0.5187
39 1 2.4168 -9.6997 0.6274
40 1 0.5422 -6.4899 1.7998
41 1 0.5836 -6.1354 0.0567
42 1 2.3842 -1.8848 2.0848
43 1 0.7272 -2.0280 1.4225
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000971326199.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:01
Heat of formation + Delta-G solvation = -68.848623 kcal
Electronic energy + Delta-G solvation = -24395.255029 eV
Core-core repulsion = 20860.950268 eV
Total energy + Delta-G solvation = -3534.304761 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 295.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.79293 -40.67653 -39.00628 -37.28525 -36.55794 -34.29585 -33.32184 -31.27650
-30.66705 -29.48661 -28.08398 -26.59395 -25.03392 -24.03653 -23.46190 -20.98134
-20.41116 -19.97681 -18.97593 -18.37377 -18.17104 -17.62146 -17.14275 -16.62643
-16.32215 -16.01159 -15.65990 -15.17690 -15.04523 -14.90418 -14.60349 -14.50252
-14.33561 -14.17891 -13.75644 -13.36578 -13.08233 -12.88014 -12.75853 -12.67477
-12.51213 -12.36418 -12.15096 -12.11095 -12.07818 -12.04549 -11.82689 -11.47183
-11.34039 -10.65874 -10.59520 -10.06637 -9.66612 -8.76765 -7.84304 -5.33907
1.46819 1.48758 1.50098 1.56690 1.58300 1.91587 2.31976 2.51043
3.25097 3.33632 3.55866 3.61417 3.62776 3.72683 3.94812 3.95554
4.18677 4.20854 4.22683 4.32819 4.43066 4.45703 4.58117 4.67393
4.73954 4.78958 4.86861 4.93462 4.97627 5.02924 5.16512 5.25435
5.26523 5.35299 5.46641 5.64250 5.78338 5.83299 6.28043 6.33372
6.55064 7.08761 7.15905 7.16596 7.84706 8.29105 9.18511
Molecular weight = 295.17amu
Principal moments of inertia in cm(-1)
A = 0.034637 B = 0.003140 C = 0.003034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 808.188877 B = 8914.369127 C = 9225.439017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.184 3.816
2 N -0.606 5.606
3 C -0.271 4.271
4 H 0.072 0.928
5 C -0.045 4.045
6 N -0.936 5.936
7 Si 0.970 3.030
8 H -0.274 1.274
9 H -0.295 1.295
10 H -0.280 1.280
11 C 0.167 3.833
12 H 0.076 0.924
13 C -0.143 4.143
14 C 0.106 3.894
15 N -0.611 5.611
16 C 0.529 3.471
17 O -0.583 6.583
18 C -0.095 4.095
19 H 0.127 0.873
20 C -0.119 4.119
21 C 0.113 3.887
22 N -0.708 5.708
23 C 0.527 3.473
24 O -0.604 6.604
25 C -0.120 4.120
26 C 0.095 3.905
27 H 0.006 0.994
28 H 0.021 0.979
29 H 0.020 0.980
30 H 0.248 0.752
31 H 0.062 0.938
32 H 0.086 0.914
33 H 0.099 0.901
34 H 0.087 0.913
35 H 0.097 0.903
36 H 0.068 0.932
37 H 0.109 0.891
38 H 0.095 0.905
39 H 0.408 0.592
40 H 0.097 0.903
41 H 0.110 0.890
42 H 0.054 0.946
43 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.835 -21.280 0.773 23.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.328 5.328
3 C -0.401 4.401
4 H 0.090 0.910
5 C -0.241 4.241
6 N -0.583 5.583
7 Si 0.798 3.202
8 H -0.199 1.199
9 H -0.221 1.221
10 H -0.206 1.206
11 C 0.058 3.942
12 H 0.094 0.906
13 C -0.183 4.183
14 C -0.016 4.016
15 N -0.344 5.344
16 C 0.319 3.681
17 O -0.463 6.463
18 C -0.116 4.116
19 H 0.145 0.855
20 C -0.157 4.157
21 C -0.010 4.010
22 N -0.359 5.359
23 C 0.315 3.685
24 O -0.486 6.486
25 C -0.160 4.160
26 C -0.031 4.031
27 H 0.024 0.976
28 H 0.040 0.960
29 H 0.038 0.962
30 H 0.058 0.942
31 H 0.081 0.919
32 H 0.104 0.896
33 H 0.117 0.883
34 H 0.106 0.894
35 H 0.116 0.884
36 H 0.087 0.913
37 H 0.127 0.873
38 H 0.113 0.887
39 H 0.245 0.755
40 H 0.115 0.885
41 H 0.128 0.872
42 H 0.073 0.927
43 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 8.332 -21.144 1.194 22.758
hybrid contribution -0.106 1.196 0.037 1.201
sum 8.226 -19.948 1.231 21.613
Atomic orbital electron populations
1.20538 0.82620 0.95319 0.97622 1.43967 1.02041 1.00914 1.85854
1.19520 0.99373 0.87470 1.33689 0.91001 1.25872 0.97374 1.01890
0.98920 1.70255 1.12389 1.28539 1.47077 0.85311 0.77957 0.79047
0.77907 1.19939 1.22134 1.20559 1.21539 0.95806 0.84683 0.92181
0.90568 1.23072 1.02138 0.93692 0.99380 1.22236 1.03579 0.97719
0.78022 1.48574 1.68824 1.08497 1.08473 1.20726 0.75438 0.86374
0.85537 1.90691 1.52932 1.85729 1.16955 1.21416 0.97565 0.89817
1.02810 0.85504 1.21778 1.01310 0.94896 0.97742 1.21649 0.85219
0.94125 0.99966 1.45475 1.12161 1.13394 1.64854 1.20016 0.82241
0.89763 0.76498 1.90767 1.40463 1.70074 1.47299 1.21517 0.97579
0.91411 1.05513 1.22625 0.99847 0.81486 0.99116 0.97578 0.96022
0.96202 0.94204 0.91904 0.89568 0.88329 0.89438 0.88417 0.91298
0.87272 0.88702 0.75535 0.88512 0.87172 0.92743 0.92743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.95 7.63 127.77 0.97 9.92 16
2 N -0.61 -29.21 2.97 -695.01 -2.06 -31.27 16
3 C -0.27 -14.44 9.62 84.03 0.81 -13.64 16
4 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16
5 C -0.05 -2.48 5.38 84.86 0.46 -2.02 16
6 N -0.94 -54.01 10.12 21.65 0.22 -53.79 16
7 Si 0.97 43.98 29.56 68.60 2.03 46.01 16
8 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
9 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16
10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16
11 C 0.17 6.26 3.54 46.38 0.16 6.42 16
12 H 0.08 2.86 7.96 -2.39 -0.02 2.84 16
13 C -0.14 -4.22 6.52 31.80 0.21 -4.02 16
14 C 0.11 2.25 6.14 86.75 0.53 2.79 16
15 N -0.61 -16.60 3.33 -811.73 -2.70 -19.30 16
16 C 0.53 13.79 6.95 87.66 0.61 14.40 16
17 O -0.58 -20.08 16.48 -3.04 -0.05 -20.13 16
18 C -0.09 -1.53 2.14 -11.40 -0.02 -1.55 16
19 H 0.13 1.39 7.26 -2.38 -0.02 1.38 16
20 C -0.12 -1.50 4.72 30.69 0.15 -1.36 16
21 C 0.11 0.72 7.17 86.50 0.62 1.34 16
22 N -0.71 -8.36 5.45 -467.28 -2.55 -10.91 16
23 C 0.53 10.33 7.71 87.72 0.68 11.01 16
24 O -0.60 -17.42 17.78 -3.05 -0.05 -17.47 16
25 C -0.12 -2.18 5.34 29.71 0.16 -2.02 16
26 C 0.09 3.32 6.48 86.86 0.56 3.89 16
27 H 0.01 0.31 7.44 -2.38 -0.02 0.29 16
28 H 0.02 1.16 7.02 -2.39 -0.02 1.14 16
29 H 0.02 0.84 6.25 -2.39 -0.01 0.83 16
30 H 0.25 14.02 8.31 -92.70 -0.77 13.24 16
31 H 0.06 2.06 7.16 -2.39 -0.02 2.04 16
32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
33 H 0.10 1.50 7.93 -2.39 -0.02 1.48 16
34 H 0.09 1.50 7.61 -2.39 -0.02 1.48 16
35 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16
36 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16
37 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16
38 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16
39 H 0.41 3.90 8.80 -92.71 -0.82 3.08 16
40 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16
41 H 0.11 1.94 7.61 -2.38 -0.02 1.93 16
42 H 0.05 2.09 7.99 -2.39 -0.02 2.07 16
43 H 0.05 2.07 6.23 -2.39 -0.01 2.06 16
Total: -1.00 -73.73 340.50 0.93 -72.80
By element:
Atomic # 1 Polarization: 8.70 SS G_CDS: 0.20 Total: 8.90 kcal
Atomic # 6 Polarization: 19.27 SS G_CDS: 5.89 Total: 25.16 kcal
Atomic # 7 Polarization: -108.18 SS G_CDS: -7.09 Total: -115.27 kcal
Atomic # 8 Polarization: -37.50 SS G_CDS: -0.10 Total: -37.60 kcal
Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal
Total: -73.73 0.93 -72.80 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000971326199.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal
(2) G-P(sol) polarization free energy of solvation -73.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.778 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds