Wall clock time and date at job start Tue Mar 31 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99671 * 2 1 4 4 N 1.34777 * 119.99893 * 180.02562 * 2 1 3 5 5 C 1.47580 * 134.49270 * 179.97438 * 4 2 1 6 6 C 1.53943 * 86.11908 * 155.36132 * 5 4 2 7 7 C 1.50697 * 113.74501 * 137.95164 * 6 5 4 8 8 O 1.21283 * 119.99601 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00099 * 179.97438 * 7 6 5 10 10 C 1.47431 * 125.64977 * 0.03713 * 9 7 6 11 11 C 1.54905 * 104.83262 * 155.83135 * 10 9 7 12 12 C 1.55155 * 101.58461 * 37.00321 * 11 10 9 13 13 H 1.09007 * 110.71764 * 83.04325 * 12 11 10 14 14 N 1.46498 * 110.72078 * 206.13142 * 12 11 10 15 15 C 1.46499 * 119.99620 * 56.16232 * 14 12 11 16 16 C 1.36933 * 120.00276 * 236.16142 * 14 12 11 17 17 H 1.07995 * 120.00351 * 23.42157 * 16 14 12 18 18 C 1.38812 * 120.00018 * 203.42454 * 16 14 12 19 19 N 1.31618 * 119.99990 * 14.49124 * 18 16 14 20 20 Si 1.86800 * 120.00083 * 194.49240 * 18 16 14 21 21 H 1.48492 * 109.47435 * 84.98720 * 20 18 16 22 22 H 1.48504 * 109.47130 * 204.98801 * 20 18 16 23 23 H 1.48506 * 109.46970 * 324.98453 * 20 18 16 24 24 C 1.47322 * 125.61759 * 180.16401 * 9 7 6 25 25 C 1.47578 * 134.49474 * 359.97438 * 4 2 1 26 26 H 1.09000 * 109.46941 * 269.99574 * 1 2 3 27 27 H 1.08999 * 109.47323 * 29.99392 * 1 2 3 28 28 H 1.08996 * 109.47226 * 150.00095 * 1 2 3 29 29 H 1.09001 * 113.76481 * 41.05604 * 5 4 2 30 30 H 1.09003 * 113.87343 * 269.67476 * 5 4 2 31 31 H 1.09000 * 113.73949 * 269.15557 * 6 5 4 32 32 H 1.08995 * 110.36767 * 36.98710 * 10 9 7 33 33 H 1.09004 * 110.45160 * 274.71255 * 10 9 7 34 34 H 1.08999 * 111.00241 * 278.93121 * 11 10 9 35 35 H 1.09005 * 111.03773 * 155.09614 * 11 10 9 36 36 H 1.09005 * 109.47256 * 95.18913 * 15 14 12 37 37 H 1.09005 * 109.47021 * 215.18248 * 15 14 12 38 38 H 1.09002 * 109.47310 * 335.18559 * 15 14 12 39 39 H 0.97004 * 120.00133 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.06151 * 61.75889 * 24 9 7 41 41 H 1.09005 * 109.84956 * 300.50040 * 24 9 7 42 42 H 1.09001 * 113.77267 * 90.33747 * 25 4 2 43 43 H 1.09009 * 113.76570 * 318.93955 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6097 -1.5366 -0.0012 6 6 3.1597 -2.8623 0.6390 7 6 3.8593 -4.0743 0.0800 8 8 4.6911 -3.9454 -0.7932 9 7 3.5614 -5.3014 0.5511 10 6 2.5758 -5.6009 1.6059 11 6 2.1563 -7.0701 1.3509 12 6 3.4980 -7.7029 0.8963 13 1 4.1053 -7.9799 1.7581 14 7 3.2583 -8.8659 0.0383 15 6 2.4485 -8.7267 -1.1745 16 6 3.7910 -10.0829 0.3700 17 1 4.0502 -10.2974 1.3962 18 6 3.9982 -11.0410 -0.6129 19 7 3.9580 -10.6997 -1.8834 20 14 4.3339 -12.8146 -0.1323 21 1 3.0460 -13.5210 0.0848 22 1 5.0903 -13.4872 -1.2190 23 1 5.1327 -12.8456 1.1192 24 6 4.1690 -6.5649 0.0987 25 6 1.7864 -2.5893 -0.0007 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5138 29 1 4.2235 -0.9183 0.6540 30 1 4.0351 -1.6522 -0.9981 31 1 3.1499 -2.8422 1.7288 32 1 1.7139 -4.9396 1.5185 33 1 3.0308 -5.5019 2.5915 34 1 1.4080 -7.1312 0.5607 35 1 1.7939 -7.5381 2.2663 36 1 3.1022 -8.5600 -2.0308 37 1 1.8695 -9.6369 -1.3313 38 1 1.7712 -7.8798 -1.0641 39 1 4.1023 -11.3693 -2.5703 40 1 5.2410 -6.5560 0.2960 41 1 3.9873 -6.7022 -0.9673 42 1 1.6742 -3.0140 -0.9982 43 1 0.9443 -2.8116 0.6549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971420711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:34 Heat of formation + Delta-G solvation = -0.647496 kcal Electronic energy + Delta-G solvation = -24114.255603 eV Core-core repulsion = 20582.908264 eV Total energy + Delta-G solvation = -3531.347339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97774 -39.43213 -38.01966 -37.00878 -34.85965 -31.85733 -31.32705 -29.87707 -29.13537 -27.78858 -26.45883 -26.10622 -24.46325 -22.57949 -22.28552 -19.38574 -19.22429 -19.02850 -17.47975 -17.23675 -17.11273 -16.26686 -15.80126 -15.69086 -14.98210 -14.75382 -14.52116 -13.74510 -13.46820 -13.25664 -13.25070 -13.07447 -12.96866 -12.70412 -12.56458 -12.47221 -12.22017 -12.08960 -11.91132 -11.59814 -11.29569 -10.98770 -10.86284 -10.63897 -10.54154 -10.34219 -10.21154 -9.95172 -9.90676 -9.69324 -9.01109 -8.63442 -8.41672 -6.87560 -5.81984 -3.30537 2.32113 2.47354 2.59514 3.13104 3.33507 3.39912 3.41164 3.99664 4.13806 4.40454 4.46552 4.64250 4.81192 4.87877 4.89247 4.98223 5.06714 5.17020 5.18126 5.24205 5.33895 5.38860 5.43733 5.51820 5.58196 5.71180 5.79103 5.81889 5.91829 6.25958 6.28136 6.42780 6.57971 6.73877 6.79096 7.24586 7.36107 7.64272 7.69337 7.72174 7.85911 8.23042 8.29851 9.12166 9.74718 10.23547 11.22088 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037809 B = 0.002930 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.386574 B = 9554.905756 C = 9685.496708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.534 3.466 3 O -0.548 6.548 4 N -0.647 5.647 5 C 0.128 3.872 6 C -0.146 4.146 7 C 0.532 3.468 8 O -0.539 6.539 9 N -0.609 5.609 10 C 0.101 3.899 11 C -0.153 4.153 12 C 0.172 3.828 13 H 0.078 0.922 14 N -0.585 5.585 15 C 0.159 3.841 16 C -0.265 4.265 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.086 3.914 25 C 0.120 3.880 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.003 0.997 39 H 0.254 0.746 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 14.574 7.275 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.325 3.675 3 O -0.426 6.426 4 N -0.384 5.384 5 C 0.006 3.994 6 C -0.168 4.168 7 C 0.319 3.681 8 O -0.416 6.416 9 N -0.342 5.342 10 C -0.023 4.023 11 C -0.194 4.194 12 C 0.061 3.939 13 H 0.097 0.903 14 N -0.305 5.305 15 C 0.014 3.986 16 C -0.394 4.394 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.038 4.038 25 C -0.003 4.003 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.901 15.323 6.591 18.457 hybrid contribution 0.174 -1.116 0.137 1.138 sum -7.726 14.207 6.728 17.515 Atomic orbital electron populations 1.21841 0.91168 1.04896 1.04783 1.20518 0.90260 0.81609 0.75117 1.90733 1.70884 1.30428 1.50512 1.50072 1.09228 1.05370 1.73750 1.23051 0.83292 0.90758 1.02291 1.23311 0.97045 0.93903 1.02566 1.19761 0.82935 0.82925 0.82484 1.90730 1.34094 1.85483 1.31341 1.48658 1.40787 1.06273 1.38526 1.22344 0.91270 0.97863 0.90790 1.23355 1.00871 0.92857 1.02271 1.21368 0.92583 0.86410 0.93489 0.90337 1.43916 1.56945 1.04078 1.25541 1.20800 0.92573 0.96629 0.88576 1.19197 1.37851 0.89599 0.92747 0.91177 1.25070 0.99801 0.99188 0.95255 1.70069 1.52986 1.32658 0.98817 0.86247 0.77850 0.84745 0.77493 1.21361 1.21704 1.20456 1.23012 0.97653 0.81968 1.01147 1.23136 0.96358 0.79222 1.01590 0.88792 0.88764 0.90177 0.89447 0.87986 0.85829 0.91380 0.91488 0.90420 0.90344 0.94893 0.94007 0.97873 0.93537 0.92035 0.90756 0.88767 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.14 36.01 0.37 -0.74 16 2 C 0.53 6.00 8.17 -10.98 -0.09 5.91 16 3 O -0.55 -8.59 17.83 5.56 0.10 -8.49 16 4 N -0.65 -6.60 3.61 -178.42 -0.64 -7.24 16 5 C 0.13 1.40 8.18 -2.98 -0.02 1.38 16 6 C -0.15 -1.41 3.31 -90.85 -0.30 -1.71 16 7 C 0.53 7.47 7.38 -10.99 -0.08 7.39 16 8 O -0.54 -9.86 16.22 5.56 0.09 -9.77 16 9 N -0.61 -8.60 3.33 -170.28 -0.57 -9.16 16 10 C 0.10 1.08 6.65 -2.53 -0.02 1.06 16 11 C -0.15 -2.10 6.60 -24.59 -0.16 -2.27 16 12 C 0.17 3.12 3.43 -66.10 -0.23 2.89 16 13 H 0.08 1.42 7.93 -51.92 -0.41 1.01 16 14 N -0.58 -13.49 2.93 -171.39 -0.50 -13.99 16 15 C 0.16 3.64 7.70 59.85 0.46 4.10 16 16 C -0.26 -6.83 9.59 -15.06 -0.14 -6.98 16 17 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 18 C 0.01 0.17 5.07 -17.43 -0.09 0.08 16 19 N -0.90 -25.43 10.82 55.49 0.60 -24.83 16 20 Si 0.91 21.02 29.58 -169.99 -5.03 15.99 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.09 1.55 6.53 -2.90 -0.02 1.53 16 25 C 0.12 0.96 7.58 -2.98 -0.02 0.93 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.40 7.84 -51.93 -0.41 -0.01 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.26 7.41 -51.93 -0.38 0.88 16 31 H 0.12 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.07 0.54 7.36 -51.93 -0.38 0.16 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.14 6.21 -51.93 -0.32 0.82 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.84 7.25 -51.93 -0.38 0.47 16 37 H 0.04 1.04 7.41 -51.93 -0.38 0.65 16 38 H 0.00 0.06 6.20 -51.93 -0.32 -0.27 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.55 7.02 -51.93 -0.36 1.19 16 42 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -33.45 349.95 -7.73 -41.18 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.70 Total: -2.54 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.35 Total: 13.58 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -1.11 Total: -55.23 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.19 Total: -18.25 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.45 -7.73 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971420711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.530 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds