Wall clock time and date at job start Tue Mar 31 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21284 * 119.99733 * 2 1 4 4 N 1.34777 * 120.00057 * 179.97438 * 2 1 3 5 5 C 1.47578 * 134.48791 * 179.97438 * 4 2 1 6 6 C 1.53944 * 86.11251 * 155.36346 * 5 4 2 7 7 C 1.50703 * 113.74181 * 137.95236 * 6 5 4 8 8 O 1.21273 * 120.00074 * 1.92455 * 7 6 5 9 9 N 1.34780 * 119.99979 * 181.91928 * 7 6 5 10 10 C 1.47019 * 125.64652 * 359.97438 * 9 7 6 11 11 C 1.54330 * 107.26907 * 178.99307 * 10 9 7 12 12 C 1.55153 * 102.94158 * 337.80489 * 11 10 9 13 13 H 1.09002 * 111.00143 * 277.38850 * 12 11 10 14 14 N 1.46497 * 111.00018 * 153.57660 * 12 11 10 15 15 C 1.46500 * 120.00505 * 304.57760 * 14 12 11 16 16 C 1.36940 * 120.00016 * 124.58600 * 14 12 11 17 17 H 1.08001 * 119.99304 * 340.69494 * 16 14 12 18 18 C 1.38806 * 120.00498 * 160.42469 * 16 14 12 19 19 N 1.31617 * 119.99781 * 347.10237 * 18 16 14 20 20 Si 1.86794 * 120.00189 * 167.10612 * 18 16 14 21 21 H 1.48499 * 109.47441 * 59.99874 * 20 18 16 22 22 H 1.48505 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47273 * 299.99659 * 20 18 16 24 24 C 1.47464 * 125.63004 * 180.02562 * 9 7 6 25 25 C 1.47811 * 134.45941 * 359.87255 * 4 2 1 26 26 H 1.09003 * 109.46673 * 239.99717 * 1 2 3 27 27 H 1.08996 * 109.46947 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46910 * 120.00048 * 1 2 3 29 29 H 1.08994 * 113.77440 * 41.06283 * 5 4 2 30 30 H 1.09000 * 113.76841 * 269.66040 * 5 4 2 31 31 H 1.09003 * 113.74117 * 269.14969 * 6 5 4 32 32 H 1.08997 * 109.88769 * 59.57464 * 10 9 7 33 33 H 1.09005 * 110.00953 * 298.47863 * 10 9 7 34 34 H 1.09003 * 110.71514 * 219.43832 * 11 10 9 35 35 H 1.09002 * 110.72064 * 96.17170 * 11 10 9 36 36 H 1.09000 * 109.47229 * 264.82985 * 15 14 12 37 37 H 1.08999 * 109.46892 * 24.82944 * 15 14 12 38 38 H 1.08995 * 109.47048 * 144.82705 * 15 14 12 39 39 H 0.97002 * 120.00076 * 180.02562 * 19 18 16 40 40 H 1.08994 * 110.35062 * 85.23212 * 24 9 7 41 41 H 1.09003 * 110.40190 * 322.89587 * 24 9 7 42 42 H 1.08994 * 113.76982 * 90.36828 * 25 4 2 43 43 H 1.09004 * 113.82894 * 318.91297 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6098 -1.5364 0.0002 6 6 3.1598 -2.8615 0.6415 7 6 3.8595 -4.0741 0.0836 8 8 4.7158 -3.9431 -0.7651 9 7 3.5336 -5.3041 0.5278 10 6 2.5196 -5.6056 1.5488 11 6 2.4760 -7.1396 1.7123 12 6 3.0653 -7.6489 0.3705 13 1 2.3027 -7.6700 -0.4081 14 7 3.6809 -8.9681 0.5346 15 6 4.7244 -9.1693 1.5429 16 6 3.2809 -10.0133 -0.2547 17 1 2.3302 -9.9712 -0.7654 18 6 4.0998 -11.1242 -0.4029 19 7 5.3529 -11.0761 -0.0031 20 14 3.4235 -12.6875 -1.1698 21 1 2.9560 -12.3999 -2.5496 22 1 4.4910 -13.7190 -1.2143 23 1 2.2862 -13.1863 -0.3557 24 6 4.1362 -6.5701 0.0709 25 6 1.7850 -2.5913 0.0035 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 4.2236 -0.9177 0.6548 30 1 4.0333 -1.6527 -0.9974 31 1 3.1499 -2.8406 1.7313 32 1 1.5457 -5.2397 1.2235 33 1 2.7933 -5.1395 2.4954 34 1 1.4499 -7.4848 1.8388 35 1 3.0965 -7.4558 2.5509 36 1 5.7044 -9.0607 1.0782 37 1 4.6131 -8.4277 2.3339 38 1 4.6321 -10.1692 1.9667 39 1 5.9253 -11.8523 -0.1069 40 1 5.0501 -6.7775 0.6274 41 1 4.3434 -6.5281 -0.9984 42 1 1.6715 -3.0178 -0.9931 43 1 0.9442 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971420712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:36 Heat of formation + Delta-G solvation = 0.373540 kcal Electronic energy + Delta-G solvation = -24024.603877 eV Core-core repulsion = 20493.300814 eV Total energy + Delta-G solvation = -3531.303063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.97761 -39.45144 -38.02844 -37.02440 -34.90108 -31.87755 -31.33158 -29.88206 -29.13934 -27.78556 -26.47361 -26.12917 -24.47314 -22.61843 -22.20706 -19.39957 -19.30980 -19.02868 -17.47210 -17.25182 -17.10499 -16.18800 -15.97576 -15.64329 -15.10953 -14.78501 -14.11276 -13.95285 -13.46370 -13.34544 -13.23228 -13.04013 -13.02100 -12.69615 -12.59686 -12.46449 -12.26022 -12.17051 -12.02255 -11.57204 -11.31528 -10.94741 -10.87034 -10.57302 -10.50109 -10.34825 -10.22347 -9.96930 -9.88317 -9.71329 -9.02726 -8.65677 -8.43074 -6.91664 -5.81539 -3.26905 2.31844 2.45090 2.57489 3.10960 3.34069 3.39950 3.40457 3.97417 4.12526 4.39609 4.46118 4.63701 4.79401 4.87938 4.90154 4.95241 5.04714 5.14728 5.18215 5.24218 5.32502 5.37697 5.40920 5.53656 5.59767 5.70807 5.77562 5.80921 5.91634 6.21517 6.29626 6.41888 6.54124 6.71628 6.78645 7.31573 7.34696 7.63344 7.67634 7.73459 7.84824 8.20429 8.28290 9.12893 9.75331 10.22012 11.23083 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034333 B = 0.002899 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.355997 B = 9657.680813 C = 9838.075284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.534 3.466 3 O -0.547 6.547 4 N -0.648 5.648 5 C 0.129 3.871 6 C -0.146 4.146 7 C 0.534 3.466 8 O -0.539 6.539 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.155 4.155 12 C 0.174 3.826 13 H 0.078 0.922 14 N -0.586 5.586 15 C 0.160 3.840 16 C -0.262 4.262 17 H 0.071 0.929 18 C 0.004 3.996 19 N -0.906 5.906 20 Si 0.908 3.092 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.085 3.915 25 C 0.121 3.879 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.001 0.999 38 H 0.048 0.952 39 H 0.255 0.745 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.372 15.029 4.621 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.324 3.676 3 O -0.425 6.425 4 N -0.385 5.385 5 C 0.007 3.993 6 C -0.168 4.168 7 C 0.320 3.680 8 O -0.417 6.417 9 N -0.343 5.343 10 C -0.020 4.020 11 C -0.195 4.195 12 C 0.063 3.937 13 H 0.096 0.904 14 N -0.306 5.306 15 C 0.016 3.984 16 C -0.391 4.391 17 H 0.089 0.911 18 C -0.195 4.195 19 N -0.551 5.551 20 Si 0.738 3.262 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.039 4.039 25 C -0.003 4.003 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.538 15.746 4.138 18.869 hybrid contribution -0.248 -1.008 -0.335 1.090 sum -9.786 14.738 3.803 18.095 Atomic orbital electron populations 1.21872 0.91157 1.05409 1.04320 1.20519 0.90273 0.81611 0.75156 1.90736 1.70941 1.30421 1.50392 1.50105 1.09215 1.05368 1.73845 1.23046 0.83261 0.90784 1.02234 1.23319 0.97004 0.93870 1.02627 1.19748 0.83086 0.82927 0.82226 1.90726 1.32900 1.85526 1.32533 1.48562 1.39204 1.06129 1.40393 1.22048 0.91135 0.97907 0.90904 1.23221 1.02437 0.91898 1.01924 1.21439 0.93218 0.84998 0.94082 0.90392 1.43891 1.43750 1.03653 1.39287 1.20847 0.91388 0.97516 0.88654 1.19202 1.00434 0.95062 1.24415 0.91071 1.25000 0.94995 0.99555 0.99954 1.70078 1.04488 1.29513 1.50972 0.86279 0.77841 0.82920 0.79138 1.20887 1.21596 1.21011 1.23190 0.98537 0.81747 1.00453 1.23168 0.96382 0.79172 1.01531 0.89381 0.88892 0.89386 0.89420 0.88040 0.85796 0.91817 0.91978 0.90475 0.90332 0.95152 0.98060 0.93312 0.93518 0.91317 0.90841 0.88790 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.07 36.01 0.36 -0.71 16 2 C 0.53 5.89 8.17 -10.98 -0.09 5.80 16 3 O -0.55 -8.51 17.81 5.55 0.10 -8.41 16 4 N -0.65 -6.45 3.61 -178.25 -0.64 -7.10 16 5 C 0.13 1.39 8.17 -2.97 -0.02 1.36 16 6 C -0.15 -1.39 3.53 -90.84 -0.32 -1.71 16 7 C 0.53 7.35 7.38 -10.98 -0.08 7.27 16 8 O -0.54 -9.68 16.17 5.56 0.09 -9.59 16 9 N -0.61 -8.50 3.33 -170.47 -0.57 -9.06 16 10 C 0.10 1.11 6.47 -3.06 -0.02 1.09 16 11 C -0.15 -2.14 6.48 -24.89 -0.16 -2.30 16 12 C 0.17 3.15 3.54 -65.77 -0.23 2.91 16 13 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 14 N -0.59 -13.52 2.97 -171.02 -0.51 -14.03 16 15 C 0.16 3.68 7.71 59.85 0.46 4.14 16 16 C -0.26 -6.77 9.66 -15.06 -0.15 -6.91 16 17 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 18 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 19 N -0.91 -25.45 10.50 55.49 0.58 -24.87 16 20 Si 0.91 21.03 29.57 -169.99 -5.03 16.00 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.08 1.51 6.49 -2.49 -0.02 1.49 16 25 C 0.12 0.91 8.18 -2.83 -0.02 0.89 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.22 7.43 -51.93 -0.39 0.84 16 31 H 0.12 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 36 H 0.03 0.77 7.43 -51.93 -0.39 0.38 16 37 H 0.00 0.02 6.17 -51.93 -0.32 -0.30 16 38 H 0.05 1.22 7.10 -51.93 -0.37 0.85 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.07 1.34 7.20 -51.93 -0.37 0.96 16 41 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 42 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -33.25 351.17 -7.81 -41.06 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.75 Total: -2.64 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -0.38 Total: 13.35 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -1.14 Total: -55.06 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.19 Total: -18.00 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.25 -7.81 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971420712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.437 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds