Wall clock time and date at job start Tue Mar 31 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21284 * 119.99733 * 2 1 4 4 N 1.34777 * 120.00057 * 179.97438 * 2 1 3 5 5 C 1.47578 * 134.48791 * 179.97438 * 4 2 1 6 6 C 1.53944 * 86.11251 * 155.36346 * 5 4 2 7 7 C 1.50703 * 113.74181 * 137.95236 * 6 5 4 8 8 O 1.21273 * 120.00074 * 1.92455 * 7 6 5 9 9 N 1.34780 * 119.99979 * 181.91928 * 7 6 5 10 10 C 1.47019 * 125.64652 * 359.97438 * 9 7 6 11 11 C 1.54330 * 107.26907 * 178.99307 * 10 9 7 12 12 C 1.55153 * 102.94158 * 337.80489 * 11 10 9 13 13 H 1.09002 * 111.00143 * 277.38850 * 12 11 10 14 14 N 1.46497 * 111.00018 * 153.57660 * 12 11 10 15 15 C 1.46500 * 120.00505 * 304.57760 * 14 12 11 16 16 C 1.36940 * 120.00016 * 124.58600 * 14 12 11 17 17 H 1.08001 * 119.99304 * 340.69494 * 16 14 12 18 18 C 1.38806 * 120.00498 * 160.42469 * 16 14 12 19 19 N 1.31617 * 119.99781 * 347.10237 * 18 16 14 20 20 Si 1.86794 * 120.00189 * 167.10612 * 18 16 14 21 21 H 1.48499 * 109.47441 * 59.99874 * 20 18 16 22 22 H 1.48505 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47273 * 299.99659 * 20 18 16 24 24 C 1.47464 * 125.63004 * 180.02562 * 9 7 6 25 25 C 1.47811 * 134.45941 * 359.87255 * 4 2 1 26 26 H 1.09003 * 109.46673 * 239.99717 * 1 2 3 27 27 H 1.08996 * 109.46947 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46910 * 120.00048 * 1 2 3 29 29 H 1.08994 * 113.77440 * 41.06283 * 5 4 2 30 30 H 1.09000 * 113.76841 * 269.66040 * 5 4 2 31 31 H 1.09003 * 113.74117 * 269.14969 * 6 5 4 32 32 H 1.08997 * 109.88769 * 59.57464 * 10 9 7 33 33 H 1.09005 * 110.00953 * 298.47863 * 10 9 7 34 34 H 1.09003 * 110.71514 * 219.43832 * 11 10 9 35 35 H 1.09002 * 110.72064 * 96.17170 * 11 10 9 36 36 H 1.09000 * 109.47229 * 264.82985 * 15 14 12 37 37 H 1.08999 * 109.46892 * 24.82944 * 15 14 12 38 38 H 1.08995 * 109.47048 * 144.82705 * 15 14 12 39 39 H 0.97002 * 120.00076 * 180.02562 * 19 18 16 40 40 H 1.08994 * 110.35062 * 85.23212 * 24 9 7 41 41 H 1.09003 * 110.40190 * 322.89587 * 24 9 7 42 42 H 1.08994 * 113.76982 * 90.36828 * 25 4 2 43 43 H 1.09004 * 113.82894 * 318.91297 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6098 -1.5364 0.0002 6 6 3.1598 -2.8615 0.6415 7 6 3.8595 -4.0741 0.0836 8 8 4.7158 -3.9431 -0.7651 9 7 3.5336 -5.3041 0.5278 10 6 2.5196 -5.6056 1.5488 11 6 2.4760 -7.1396 1.7123 12 6 3.0653 -7.6489 0.3705 13 1 2.3027 -7.6700 -0.4081 14 7 3.6809 -8.9681 0.5346 15 6 4.7244 -9.1693 1.5429 16 6 3.2809 -10.0133 -0.2547 17 1 2.3302 -9.9712 -0.7654 18 6 4.0998 -11.1242 -0.4029 19 7 5.3529 -11.0761 -0.0031 20 14 3.4235 -12.6875 -1.1698 21 1 2.9560 -12.3999 -2.5496 22 1 4.4910 -13.7190 -1.2143 23 1 2.2862 -13.1863 -0.3557 24 6 4.1362 -6.5701 0.0709 25 6 1.7850 -2.5913 0.0035 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 4.2236 -0.9177 0.6548 30 1 4.0333 -1.6527 -0.9974 31 1 3.1499 -2.8406 1.7313 32 1 1.5457 -5.2397 1.2235 33 1 2.7933 -5.1395 2.4954 34 1 1.4499 -7.4848 1.8388 35 1 3.0965 -7.4558 2.5509 36 1 5.7044 -9.0607 1.0782 37 1 4.6131 -8.4277 2.3339 38 1 4.6321 -10.1692 1.9667 39 1 5.9253 -11.8523 -0.1069 40 1 5.0501 -6.7775 0.6274 41 1 4.3434 -6.5281 -0.9984 42 1 1.6715 -3.0178 -0.9931 43 1 0.9442 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971420712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:36 Heat of formation + Delta-G solvation = -22.979369 kcal Electronic energy + Delta-G solvation = -24025.616535 eV Core-core repulsion = 20493.300814 eV Total energy + Delta-G solvation = -3532.315721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88446 -40.51031 -39.15961 -38.15671 -36.54298 -33.49828 -32.21921 -31.23461 -30.01928 -28.94834 -28.05311 -27.17894 -25.74704 -24.13752 -23.19394 -20.90722 -20.12223 -19.96962 -18.93889 -18.49142 -18.00518 -17.43339 -17.09334 -16.64504 -16.41273 -16.02702 -15.49303 -15.15563 -14.77534 -14.56168 -14.36378 -14.20098 -14.02147 -13.79616 -13.57535 -13.44431 -13.26843 -13.12991 -13.08215 -12.91570 -12.72237 -12.45293 -12.35960 -12.16938 -12.06781 -12.00346 -11.78032 -11.34317 -11.18699 -10.78522 -10.61051 -9.85518 -9.63402 -8.81399 -7.81997 -5.28643 1.49566 1.50303 1.51255 1.54707 1.57669 1.65562 2.06002 2.53388 3.17632 3.30361 3.46937 3.53310 3.62559 3.92352 3.98070 4.08545 4.16150 4.26726 4.33553 4.42210 4.45938 4.50205 4.50534 4.57691 4.66962 4.74634 4.78965 4.83123 4.94337 4.98276 5.09509 5.11718 5.25374 5.28123 5.38185 5.49566 5.65524 5.76166 6.31761 6.56371 6.63468 7.05264 7.10670 7.15468 7.87224 8.29051 9.20972 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034333 B = 0.002899 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.355997 B = 9657.680813 C = 9838.075284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.525 3.475 3 O -0.605 6.605 4 N -0.647 5.647 5 C 0.115 3.885 6 C -0.128 4.128 7 C 0.532 3.468 8 O -0.592 6.592 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.142 4.142 12 C 0.165 3.835 13 H 0.078 0.922 14 N -0.603 5.603 15 C 0.179 3.821 16 C -0.263 4.263 17 H 0.079 0.921 18 C -0.056 4.056 19 N -0.941 5.941 20 Si 0.970 3.030 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.274 1.274 24 C 0.096 3.904 25 C 0.130 3.870 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.069 0.931 36 H -0.006 1.006 37 H 0.036 0.964 38 H 0.020 0.980 39 H 0.247 0.753 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.110 15.915 6.123 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.318 3.682 3 O -0.487 6.487 4 N -0.383 5.383 5 C -0.008 4.008 6 C -0.150 4.150 7 C 0.321 3.679 8 O -0.472 6.472 9 N -0.340 5.340 10 C -0.016 4.016 11 C -0.181 4.181 12 C 0.056 3.944 13 H 0.096 0.904 14 N -0.324 5.324 15 C 0.034 3.966 16 C -0.393 4.393 17 H 0.097 0.903 18 C -0.251 4.251 19 N -0.588 5.588 20 Si 0.799 3.201 21 H -0.203 1.203 22 H -0.226 1.226 23 H -0.200 1.200 24 C -0.030 4.030 25 C 0.008 3.992 26 H 0.136 0.864 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.174 0.826 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.013 0.987 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.353 16.643 5.664 22.076 hybrid contribution 0.932 -1.215 -0.837 1.745 sum -12.421 15.428 4.827 20.386 Atomic orbital electron populations 1.21898 0.87105 1.06141 1.06574 1.21460 0.92118 0.80837 0.73790 1.90711 1.72402 1.32493 1.53090 1.50184 1.08704 1.06412 1.72952 1.23012 0.84353 0.92090 1.01327 1.23299 0.97529 0.90105 1.04035 1.20521 0.82402 0.83711 0.81275 1.90715 1.35328 1.86244 1.34940 1.48575 1.39612 1.04818 1.40958 1.22325 0.92136 0.95699 0.91489 1.23084 1.02925 0.94047 0.98076 1.21650 0.92858 0.82835 0.97079 0.90404 1.44085 1.43904 1.05308 1.39096 1.20507 0.89933 0.96957 0.89198 1.19613 1.00434 0.95783 1.23501 0.90285 1.25773 0.95317 1.02580 1.01409 1.70265 1.05686 1.29734 1.53128 0.85292 0.76996 0.79285 0.78558 1.20311 1.22611 1.20002 1.22702 0.97872 0.84211 0.98230 1.23375 0.96439 0.76991 1.02354 0.86398 0.89113 0.87457 0.89665 0.90303 0.82577 0.87522 0.88728 0.88348 0.91260 0.98718 0.94542 0.96070 0.94388 0.93721 0.94069 0.88993 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.07 71.24 0.72 -0.69 16 2 C 0.52 10.46 8.17 87.66 0.72 11.17 16 3 O -0.61 -18.69 17.81 -3.04 -0.05 -18.74 16 4 N -0.65 -11.09 3.61 -836.26 -3.02 -14.12 16 5 C 0.12 2.37 8.17 86.49 0.71 3.08 16 6 C -0.13 -1.98 3.53 -10.88 -0.04 -2.02 16 7 C 0.53 13.76 7.38 87.66 0.65 14.41 16 8 O -0.59 -21.68 16.17 -3.01 -0.05 -21.73 16 9 N -0.61 -15.44 3.33 -811.64 -2.70 -18.14 16 10 C 0.10 1.69 6.47 86.73 0.56 2.25 16 11 C -0.14 -3.37 6.48 31.78 0.21 -3.16 16 12 C 0.16 5.77 3.54 46.39 0.16 5.93 16 13 H 0.08 2.71 7.92 -2.39 -0.02 2.69 16 14 N -0.60 -27.95 2.97 -694.99 -2.06 -30.01 16 15 C 0.18 8.40 7.71 127.77 0.98 9.38 16 16 C -0.26 -13.66 9.66 84.03 0.81 -12.85 16 17 H 0.08 3.88 7.82 -2.91 -0.02 3.86 16 18 C -0.06 -3.04 5.11 84.86 0.43 -2.61 16 19 N -0.94 -54.89 10.50 21.65 0.23 -54.66 16 20 Si 0.97 43.75 29.57 68.60 2.03 45.78 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.10 3.41 6.49 86.86 0.56 3.97 16 25 C 0.13 1.34 8.18 86.44 0.71 2.05 16 26 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.98 7.43 -2.39 -0.02 1.96 16 31 H 0.16 1.50 8.12 -2.39 -0.02 1.48 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.80 6.17 -2.39 -0.01 1.79 16 36 H -0.01 -0.30 7.43 -2.39 -0.02 -0.31 16 37 H 0.04 1.41 6.17 -2.39 -0.01 1.40 16 38 H 0.02 1.07 7.10 -2.39 -0.02 1.06 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 41 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 42 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 43 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -79.47 351.17 2.55 -76.92 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.00 Total: 3.77 kcal Atomic # 6 Polarization: 23.74 SS G_CDS: 7.18 Total: 30.92 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -7.55 Total: -116.93 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.10 Total: -40.47 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -79.47 2.55 -76.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971420712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.945 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds