Wall clock time and date at job start Tue Mar 31 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99412 * 2 1 4 4 H 1.08005 * 119.99530 * 160.56651 * 3 2 1 5 5 C 1.38812 * 120.00249 * 340.83755 * 3 2 1 6 6 N 1.31617 * 119.99947 * 346.45678 * 5 3 2 7 7 Si 1.86797 * 119.99763 * 166.45065 * 5 3 2 8 8 H 1.48499 * 109.47253 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47109 * 120.00506 * 7 5 3 10 10 H 1.48501 * 109.47025 * 240.00329 * 7 5 3 11 11 C 1.46494 * 120.00489 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.88906 * 179.30119 * 11 2 1 13 13 C 1.55160 * 111.00298 * 55.41537 * 11 2 1 14 14 C 1.54375 * 102.91655 * 206.45466 * 13 11 2 15 15 N 1.47017 * 107.29116 * 22.14267 * 14 13 11 16 16 C 1.34777 * 125.64615 * 181.05797 * 15 14 13 17 17 O 1.21283 * 119.99502 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00144 * 0.03541 * 16 15 14 19 19 C 1.53000 * 109.46881 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.43798 * 52.46115 * 19 18 16 21 21 C 1.54636 * 110.48656 * 175.00157 * 19 18 16 22 22 C 1.54473 * 101.76477 * 93.87911 * 21 19 18 23 23 N 1.46770 * 105.47477 * 25.41808 * 22 21 19 24 24 C 1.34413 * 111.29992 * 342.98390 * 23 22 21 25 25 O 1.21284 * 124.94527 * 180.44427 * 24 23 22 26 26 C 1.47425 * 108.70378 * 1.08651 * 15 14 13 27 27 H 1.09002 * 109.47279 * 84.82896 * 1 2 3 28 28 H 1.08998 * 109.46706 * 204.82661 * 1 2 3 29 29 H 1.08999 * 109.47172 * 324.82657 * 1 2 3 30 30 H 0.97002 * 119.99545 * 180.02562 * 6 5 3 31 31 H 1.08996 * 110.71966 * 324.78445 * 13 11 2 32 32 H 1.08997 * 110.71971 * 88.06591 * 13 11 2 33 33 H 1.09001 * 109.84528 * 262.72666 * 14 13 11 34 34 H 1.09009 * 110.02404 * 141.65273 * 14 13 11 35 35 H 1.08999 * 109.47169 * 300.00063 * 18 16 15 36 36 H 1.08994 * 109.46976 * 60.00671 * 18 16 15 37 37 H 1.08999 * 110.96679 * 212.00258 * 21 19 18 38 38 H 1.09002 * 110.96611 * 335.75907 * 21 19 18 39 39 H 1.08998 * 110.24395 * 144.41868 * 22 21 19 40 40 H 1.08996 * 110.24920 * 266.41948 * 22 21 19 41 41 H 0.96993 * 124.34853 * 162.98394 * 23 22 21 42 42 H 1.08997 * 110.36549 * 217.03396 * 26 15 14 43 43 H 1.09003 * 110.36153 * 94.71101 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1835 1.2127 0.3112 5 6 1.5131 2.3548 -0.3946 6 7 0.3542 2.2956 -1.0157 7 14 2.3014 4.0116 -0.0439 8 1 3.5929 3.8063 0.6597 9 1 2.5433 4.7254 -1.3234 10 1 1.3949 4.8202 0.8103 11 6 2.1976 -1.2686 -0.0006 12 1 3.2738 -1.0960 -0.0129 13 6 1.7637 -2.1608 -1.1935 14 6 2.0555 -3.5876 -0.6814 15 7 2.0783 -3.5285 0.7874 16 6 2.3218 -4.5668 1.6116 17 8 2.3148 -4.4017 2.8131 18 6 2.6030 -5.9326 1.0402 19 6 2.8431 -6.9231 2.1813 20 1 2.0227 -6.8844 2.8978 21 6 3.0102 -8.3570 1.6270 22 6 4.5449 -8.4639 1.4876 23 7 5.0938 -7.5142 2.4627 24 6 4.1612 -6.6339 2.8651 25 8 4.3491 -5.7375 3.6603 26 6 1.7899 -2.1457 1.2095 27 1 -0.3634 0.0926 -1.0235 28 1 -0.3633 -0.9327 0.4315 29 1 -0.3633 0.8400 0.5920 30 1 -0.0903 3.1124 -1.2917 31 1 0.7011 -2.0360 -1.4019 32 1 2.3601 -1.9385 -2.0783 33 1 3.0231 -3.9238 -1.0540 34 1 1.2732 -4.2705 -1.0129 35 1 1.7492 -6.2614 0.4477 36 1 3.4887 -5.8860 0.4067 37 1 2.6302 -9.0950 2.3334 38 1 2.5223 -8.4598 0.6577 39 1 4.8751 -9.4763 1.7200 40 1 4.8522 -8.1885 0.4787 41 1 6.0116 -7.5209 2.7764 42 1 2.3845 -1.8845 2.0849 43 1 0.7274 -2.0280 1.4225 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971667706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:27 Heat of formation + Delta-G solvation = -63.803672 kcal Electronic energy + Delta-G solvation = -24335.126487 eV Core-core repulsion = 20801.040491 eV Total energy + Delta-G solvation = -3534.085996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67897 -40.61609 -38.79539 -37.38104 -36.54480 -33.89221 -33.33952 -31.31416 -30.14633 -29.12392 -28.10211 -26.94082 -24.96822 -23.69709 -22.59356 -21.25018 -20.88732 -20.04624 -18.98220 -18.43964 -17.86061 -17.59814 -16.97195 -16.70800 -16.22706 -15.73280 -15.52981 -15.11527 -14.90117 -14.60485 -14.54899 -14.40967 -14.24424 -13.81318 -13.51067 -13.38787 -13.30135 -12.96890 -12.93626 -12.84865 -12.49419 -12.38379 -12.18643 -12.08418 -12.08046 -11.87593 -11.80612 -11.44719 -10.88209 -10.67098 -10.61644 -9.97451 -9.58846 -8.84196 -7.85919 -5.31446 1.44330 1.46840 1.56615 1.63443 1.73520 2.03092 2.49849 2.53231 3.25845 3.40280 3.49674 3.56784 3.78947 3.84204 3.93614 4.11389 4.19769 4.24125 4.34286 4.42334 4.47063 4.55005 4.63240 4.73243 4.79246 4.83718 4.91202 4.96376 5.02695 5.15695 5.23492 5.26387 5.27700 5.32521 5.43980 5.60500 5.71281 6.02597 6.09699 6.28138 6.65270 7.11660 7.26497 7.39138 7.82604 8.24812 9.17445 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031875 B = 0.003151 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.214151 B = 8884.349548 C = 9230.890217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.604 5.604 3 C -0.268 4.268 4 H 0.068 0.932 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.271 1.271 9 H -0.287 1.287 10 H -0.292 1.292 11 C 0.165 3.835 12 H 0.068 0.932 13 C -0.141 4.141 14 C 0.110 3.890 15 N -0.619 5.619 16 C 0.501 3.499 17 O -0.574 6.574 18 C -0.106 4.106 19 C -0.112 4.112 20 H 0.090 0.910 21 C -0.116 4.116 22 C 0.095 3.905 23 N -0.732 5.732 24 C 0.500 3.500 25 O -0.575 6.575 26 C 0.098 3.902 27 H 0.013 0.987 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.249 0.751 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.411 0.589 42 H 0.038 0.962 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.434 -27.577 -3.597 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.326 5.326 3 C -0.398 4.398 4 H 0.086 0.914 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.796 3.204 8 H -0.196 1.196 9 H -0.214 1.214 10 H -0.219 1.219 11 C 0.056 3.944 12 H 0.086 0.914 13 C -0.181 4.181 14 C -0.012 4.012 15 N -0.354 5.354 16 C 0.291 3.709 17 O -0.453 6.453 18 C -0.146 4.146 19 C -0.134 4.134 20 H 0.108 0.892 21 C -0.153 4.153 22 C -0.028 4.028 23 N -0.387 5.387 24 C 0.286 3.714 25 O -0.453 6.453 26 C -0.028 4.028 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.250 0.750 42 H 0.057 0.943 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.328 -26.964 -2.607 27.609 hybrid contribution 0.574 1.801 0.771 2.042 sum 5.901 -25.163 -1.836 25.911 Atomic orbital electron populations 1.20506 0.82374 0.95558 0.97926 1.44003 1.02202 1.00875 1.85499 1.19580 0.96526 0.86111 1.37539 0.91384 1.25655 0.98274 1.01353 0.99127 1.70239 1.18199 1.26979 1.42645 0.85196 0.77873 0.80107 0.77199 1.19599 1.21411 1.21901 1.21519 0.95412 0.84895 0.92562 0.91425 1.23058 1.02266 0.93834 0.98908 1.22219 1.03643 0.97615 0.77720 1.48604 1.69940 1.08226 1.08613 1.21356 0.76287 0.87227 0.86015 1.90803 1.52401 1.85228 1.16831 1.21617 1.06815 0.88040 0.98109 1.21770 0.95658 0.97929 0.98065 0.89173 1.22794 0.95679 0.92063 1.04807 1.22424 0.93799 0.93777 0.92805 1.46405 1.13485 1.33128 1.45702 1.21470 0.88683 0.80496 0.80710 1.90798 1.84038 1.33971 1.36461 1.22520 0.99503 0.82182 0.98596 0.96888 0.95567 0.96626 0.94140 0.91465 0.89649 0.88927 0.88170 0.83484 0.86555 0.88711 0.85285 0.87687 0.88842 0.75048 0.94315 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.66 127.77 0.98 10.00 16 2 N -0.60 -30.56 2.97 -695.02 -2.06 -32.63 16 3 C -0.27 -14.97 9.66 84.03 0.81 -14.16 16 4 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 5 C -0.05 -2.76 5.10 84.86 0.43 -2.33 16 6 N -0.93 -54.98 10.51 21.65 0.23 -54.75 16 7 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 8 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 11 C 0.17 6.73 3.54 46.39 0.16 6.89 16 12 H 0.07 2.85 7.93 -2.39 -0.02 2.83 16 13 C -0.14 -4.35 6.53 31.80 0.21 -4.14 16 14 C 0.11 2.43 6.49 86.75 0.56 2.99 16 15 N -0.62 -19.18 3.33 -811.69 -2.70 -21.88 16 16 C 0.50 15.68 7.66 87.66 0.67 16.35 16 17 O -0.57 -24.74 14.24 16.63 0.24 -24.50 16 18 C -0.11 -1.77 4.30 29.85 0.13 -1.64 16 19 C -0.11 -2.00 2.54 -10.80 -0.03 -2.03 16 20 H 0.09 2.04 7.90 -2.39 -0.02 2.02 16 21 C -0.12 -0.63 6.71 31.65 0.21 -0.42 16 22 C 0.09 0.48 7.78 86.83 0.68 1.15 16 23 N -0.73 -11.17 6.24 -459.81 -2.87 -14.03 16 24 C 0.50 13.09 7.44 87.90 0.65 13.74 16 25 O -0.57 -23.28 16.21 16.63 0.27 -23.01 16 26 C 0.10 3.88 6.46 86.86 0.56 4.44 16 27 H 0.01 0.68 7.44 -2.39 -0.02 0.67 16 28 H 0.03 1.14 6.25 -2.39 -0.01 1.12 16 29 H 0.01 0.84 7.09 -2.39 -0.02 0.82 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.07 2.23 7.16 -2.39 -0.02 2.21 16 32 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.15 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.12 1.44 8.12 -2.39 -0.02 1.42 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.13 -0.13 7.87 -2.39 -0.02 -0.15 16 39 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.41 5.57 8.96 -92.71 -0.83 4.73 16 42 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 43 H 0.05 2.28 6.22 -2.39 -0.01 2.26 16 Total: -1.00 -86.91 342.32 1.35 -85.56 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.18 Total: 6.48 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 6.03 Total: 30.86 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -7.40 Total: -123.29 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: 0.51 Total: -47.51 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -86.91 1.35 -85.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971667706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.756 kcal (2) G-P(sol) polarization free energy of solvation -86.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds