Wall clock time and date at job start Tue Mar 31 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 120.00299 * 2 1 4 4 H 1.07996 * 119.99810 * 160.56651 * 3 2 1 5 5 C 1.38807 * 119.99694 * 340.84360 * 3 2 1 6 6 N 1.31625 * 120.00376 * 346.44846 * 5 3 2 7 7 Si 1.86807 * 119.99824 * 166.45232 * 5 3 2 8 8 H 1.48498 * 109.47170 * 59.99847 * 7 5 3 9 9 H 1.48492 * 109.47065 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46879 * 299.99908 * 7 5 3 11 11 C 1.46504 * 119.99808 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.88548 * 179.30004 * 11 2 1 13 13 C 1.55153 * 111.00720 * 55.41714 * 11 2 1 14 14 C 1.54366 * 102.92254 * 206.45790 * 13 11 2 15 15 N 1.47029 * 107.28731 * 22.13311 * 14 13 11 16 16 C 1.34774 * 125.64648 * 181.12686 * 15 14 13 17 17 O 1.21282 * 119.99957 * 179.97438 * 16 15 14 18 18 C 1.50704 * 120.00032 * 359.96569 * 16 15 14 19 19 C 1.52996 * 109.46942 * 179.97438 * 18 16 15 20 20 H 1.09004 * 110.22007 * 306.92622 * 19 18 16 21 21 C 1.54486 * 110.24581 * 185.00008 * 19 18 16 22 22 C 1.54629 * 101.76396 * 215.58267 * 21 19 18 23 23 C 1.51276 * 104.19588 * 24.79730 * 22 21 19 24 24 O 1.21290 * 124.94445 * 163.75020 * 23 22 21 25 25 N 1.34419 * 110.11631 * 343.74425 * 23 22 21 26 26 C 1.47425 * 108.70387 * 1.09646 * 15 14 13 27 27 H 1.08998 * 109.47224 * 84.81991 * 1 2 3 28 28 H 1.08993 * 109.47350 * 204.82986 * 1 2 3 29 29 H 1.09008 * 109.46998 * 324.82843 * 1 2 3 30 30 H 0.96997 * 119.99945 * 179.97438 * 6 5 3 31 31 H 1.09003 * 110.71655 * 324.78741 * 13 11 2 32 32 H 1.08994 * 110.72016 * 88.05742 * 13 11 2 33 33 H 1.08998 * 109.84414 * 262.72871 * 14 13 11 34 34 H 1.08998 * 110.03629 * 141.64542 * 14 13 11 35 35 H 1.08992 * 109.46893 * 299.99335 * 18 16 15 36 36 H 1.08995 * 109.47279 * 59.99773 * 18 16 15 37 37 H 1.08995 * 110.96842 * 333.69807 * 21 19 18 38 38 H 1.08998 * 110.97035 * 97.46716 * 21 19 18 39 39 H 1.08997 * 110.48623 * 143.47262 * 22 21 19 40 40 H 1.08996 * 110.48779 * 265.98588 * 22 21 19 41 41 H 0.97008 * 124.34828 * 179.57088 * 25 23 22 42 42 H 1.08997 * 110.36549 * 217.03080 * 26 15 14 43 43 H 1.08996 * 110.45561 * 94.75419 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1836 1.2125 0.3112 5 6 1.5133 2.3547 -0.3945 6 7 0.3544 2.2957 -1.0156 7 14 2.3018 4.0116 -0.0439 8 1 3.6261 4.0809 -0.7123 9 1 1.4282 5.0949 -0.5615 10 1 2.4777 4.1758 1.4215 11 6 2.1974 -1.2688 -0.0006 12 1 3.2736 -1.0962 -0.0129 13 6 1.7635 -2.1610 -1.1935 14 6 2.0551 -3.5877 -0.6814 15 7 2.0779 -3.5286 0.7875 16 6 2.3226 -4.5665 1.6117 17 8 2.3164 -4.4013 2.8132 18 6 2.6035 -5.9325 1.0403 19 6 2.8463 -6.9224 2.1813 20 1 3.6180 -6.5433 2.8513 21 6 3.2590 -8.2994 1.6156 22 6 2.5836 -9.2664 2.6155 23 6 1.4311 -8.4677 3.1831 24 8 0.4904 -8.9384 3.7869 25 7 1.6013 -7.1603 2.9210 26 6 1.7897 -2.1458 1.2095 27 1 -0.3633 0.0928 -1.0234 28 1 -0.3634 -0.9326 0.4315 29 1 -0.3633 0.8401 0.5920 30 1 -0.0904 3.1126 -1.2909 31 1 0.7010 -2.0360 -1.4019 32 1 2.3599 -1.9386 -2.0782 33 1 3.0226 -3.9241 -1.0539 34 1 1.2728 -4.2706 -1.0127 35 1 1.7492 -6.2616 0.4489 36 1 3.4884 -5.8859 0.4057 37 1 2.8654 -8.4415 0.6091 38 1 4.3425 -8.4180 1.6295 39 1 2.2156 -10.1531 2.0993 40 1 3.2809 -9.5474 3.4047 41 1 0.9806 -6.4636 3.1863 42 1 2.3842 -1.8845 2.0849 43 1 0.7276 -2.0264 1.4238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972537977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:23 Heat of formation + Delta-G solvation = -68.778341 kcal Electronic energy + Delta-G solvation = -23995.569678 eV Core-core repulsion = 20461.267964 eV Total energy + Delta-G solvation = -3534.301714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60556 -40.72233 -38.96856 -37.52658 -36.54982 -33.56444 -32.20787 -32.09735 -31.11881 -29.37207 -28.10331 -26.52989 -24.84919 -23.69917 -22.24186 -21.49485 -20.95064 -20.12031 -18.97629 -18.36383 -17.87210 -17.58141 -17.45610 -16.55139 -16.23078 -15.93160 -15.56923 -15.06758 -14.91770 -14.69506 -14.44213 -14.27222 -14.21351 -14.07183 -13.42736 -13.41039 -13.35557 -12.97990 -12.80015 -12.69308 -12.48523 -12.40294 -12.31927 -12.13840 -12.11031 -11.87648 -11.83602 -11.44501 -10.93175 -10.87427 -10.64008 -10.11166 -9.64049 -8.84325 -7.85044 -5.30876 1.46385 1.49621 1.55328 1.58797 1.64051 1.98434 2.45124 2.50747 3.26596 3.35434 3.54017 3.55825 3.69228 3.87242 3.94166 4.07954 4.19389 4.26507 4.35140 4.42219 4.44750 4.47650 4.62145 4.71569 4.79521 4.88052 4.91186 4.92878 5.02896 5.15983 5.21134 5.24568 5.29393 5.32622 5.43111 5.61159 5.70966 5.82905 6.10335 6.28535 6.60821 7.11466 7.15406 7.22902 7.83398 8.25616 9.18146 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037864 B = 0.002797 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.319779 B =10010.096265 C =10091.735937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.604 5.604 3 C -0.267 4.267 4 H 0.074 0.926 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.272 1.272 9 H -0.295 1.295 10 H -0.283 1.283 11 C 0.165 3.835 12 H 0.076 0.924 13 C -0.144 4.144 14 C 0.109 3.891 15 N -0.614 5.614 16 C 0.515 3.485 17 O -0.591 6.591 18 C -0.134 4.134 19 C 0.139 3.861 20 H 0.082 0.918 21 C -0.112 4.112 22 C -0.148 4.148 23 C 0.502 3.498 24 O -0.601 6.601 25 N -0.722 5.722 26 C 0.096 3.904 27 H 0.010 0.990 28 H 0.025 0.975 29 H 0.015 0.985 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.401 0.599 42 H 0.051 0.949 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 -22.055 -2.285 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.326 5.326 3 C -0.397 4.397 4 H 0.091 0.909 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.198 1.198 9 H -0.221 1.221 10 H -0.210 1.210 11 C 0.056 3.944 12 H 0.094 0.906 13 C -0.184 4.184 14 C -0.013 4.013 15 N -0.347 5.347 16 C 0.306 3.694 17 O -0.472 6.472 18 C -0.174 4.174 19 C 0.034 3.966 20 H 0.100 0.900 21 C -0.149 4.149 22 C -0.188 4.188 23 C 0.290 3.710 24 O -0.483 6.483 25 N -0.375 5.375 26 C -0.030 4.030 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.238 0.762 42 H 0.069 0.931 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.712 -22.200 -1.426 23.891 hybrid contribution -0.636 2.128 0.614 2.305 sum 8.076 -20.071 -0.811 21.650 Atomic orbital electron populations 1.20487 0.82672 0.95455 0.97775 1.44004 1.02042 1.01053 1.85457 1.19540 0.96655 0.85965 1.37508 0.90863 1.25682 0.98263 1.01486 0.99159 1.70234 1.18315 1.27094 1.42674 0.85330 0.77754 0.79540 0.77752 1.19797 1.22119 1.20977 1.21551 0.95764 0.84671 0.92373 0.90596 1.23078 1.01982 0.94095 0.99274 1.22220 1.03905 0.97341 0.77794 1.48610 1.69022 1.08400 1.08641 1.21232 0.75625 0.86808 0.85783 1.90708 1.54335 1.85461 1.16736 1.22150 1.07438 0.88322 0.99515 1.21706 0.85735 0.96771 0.92411 0.90013 1.22791 1.03818 0.88901 0.99422 1.22398 0.95507 0.99602 1.01282 1.21839 0.87247 0.84030 0.77872 1.90714 1.37192 1.75464 1.44974 1.46645 1.25108 1.08326 1.57383 1.22554 0.99572 0.81930 0.98911 0.97192 0.95708 0.96652 0.94231 0.92142 0.89599 0.87869 0.89151 0.86324 0.83278 0.87401 0.85753 0.86608 0.86445 0.76176 0.93077 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 7.66 127.77 0.98 9.72 16 2 N -0.60 -28.95 2.97 -695.03 -2.06 -31.01 16 3 C -0.27 -14.21 9.66 84.03 0.81 -13.40 16 4 H 0.07 3.77 7.82 -2.91 -0.02 3.74 16 5 C -0.05 -2.78 5.10 84.86 0.43 -2.35 16 6 N -0.94 -54.12 10.51 21.65 0.23 -53.89 16 7 Si 0.97 44.31 29.57 68.60 2.03 46.34 16 8 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 C 0.17 6.10 3.54 46.38 0.16 6.26 16 12 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 13 C -0.14 -4.10 6.52 31.80 0.21 -3.90 16 14 C 0.11 2.06 6.49 86.74 0.56 2.63 16 15 N -0.61 -15.72 3.33 -811.70 -2.70 -18.42 16 16 C 0.51 12.36 7.68 87.66 0.67 13.03 16 17 O -0.59 -19.56 15.29 -3.04 -0.05 -19.61 16 18 C -0.13 -1.55 4.50 29.85 0.13 -1.42 16 19 C 0.14 1.78 3.00 45.45 0.14 1.92 16 20 H 0.08 1.24 7.91 -2.38 -0.02 1.22 16 21 C -0.11 -0.52 6.69 31.65 0.21 -0.31 16 22 C -0.15 -1.53 6.86 30.59 0.21 -1.32 16 23 C 0.50 11.29 8.43 87.90 0.74 12.03 16 24 O -0.60 -19.99 18.03 -3.06 -0.06 -20.05 16 25 N -0.72 -14.98 5.62 -439.44 -2.47 -17.45 16 26 C 0.10 3.33 6.46 86.86 0.56 3.89 16 27 H 0.01 0.51 7.43 -2.39 -0.02 0.49 16 28 H 0.02 1.04 6.25 -2.39 -0.01 1.03 16 29 H 0.01 0.80 7.09 -2.38 -0.02 0.79 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.06 1.93 7.16 -2.39 -0.02 1.91 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 0.12 7.91 -2.39 -0.02 0.10 16 38 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.40 10.22 8.12 -92.70 -0.75 9.46 16 42 H 0.05 1.96 8.04 -2.39 -0.02 1.94 16 43 H 0.05 1.90 6.22 -2.39 -0.01 1.89 16 Total: -1.00 -77.73 344.55 1.01 -76.72 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.26 Total: 10.57 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 5.82 Total: 26.79 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -7.00 Total: -120.77 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.10 Total: -39.65 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -77.73 1.01 -76.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972537977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.940 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds