Wall clock time and date at job start Tue Mar 31 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46763 * 124.34928 * 2 1 4 4 C 1.54476 * 105.47278 * 162.98085 * 3 2 1 5 5 H 1.09000 * 110.97007 * 143.53688 * 4 3 2 6 6 C 1.50710 * 111.00221 * 267.28121 * 4 3 2 7 7 O 1.21281 * 119.99881 * 1.29429 * 6 4 3 8 8 N 1.34777 * 119.99878 * 181.28893 * 6 4 3 9 9 C 1.48212 * 119.97070 * 3.11445 * 8 6 4 10 10 C 1.47611 * 110.03833 * 102.55041 * 9 8 6 11 11 C 1.53796 * 111.84296 * 58.43592 * 10 9 8 12 12 N 1.43461 * 107.95669 * 281.54187 * 11 10 9 13 13 C 1.36940 * 118.94217 * 273.63271 * 12 11 10 14 14 H 1.08007 * 119.99731 * 25.47903 * 13 12 11 15 15 C 1.38811 * 120.00219 * 205.48547 * 13 12 11 16 16 N 1.31617 * 120.00101 * 17.36565 * 15 13 12 17 17 Si 1.86804 * 119.99923 * 197.36104 * 15 13 12 18 18 H 1.48507 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46738 * 119.99797 * 17 15 13 20 20 H 1.48495 * 109.47207 * 240.00228 * 17 15 13 21 21 C 1.48861 * 122.12324 * 93.60995 * 12 11 10 22 22 C 1.43621 * 119.96683 * 183.38945 * 8 6 4 23 23 C 1.54623 * 101.76621 * 25.41561 * 4 3 2 24 24 C 1.34422 * 124.34989 * 179.97438 * 2 1 3 25 25 O 1.21277 * 124.94225 * 0.67750 * 24 2 1 26 26 H 1.08997 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47603 * 300.02860 * 1 2 3 28 28 H 1.09007 * 109.46707 * 60.02962 * 1 2 3 29 29 H 1.09006 * 110.24859 * 43.98357 * 3 2 1 30 30 H 1.09002 * 110.31924 * 282.01903 * 3 2 1 31 31 H 1.08999 * 109.32157 * 222.78239 * 9 8 6 32 32 H 1.08997 * 109.32477 * 342.24630 * 9 8 6 33 33 H 1.08994 * 109.10234 * 297.76140 * 10 9 8 34 34 H 1.09001 * 108.90391 * 178.97645 * 10 9 8 35 35 H 1.08997 * 109.76267 * 161.92734 * 11 10 9 36 36 H 1.08997 * 109.80679 * 41.17839 * 11 10 9 37 37 H 0.97006 * 120.00100 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.48159 * 200.65440 * 21 12 11 39 39 H 1.09000 * 109.48461 * 80.63542 * 21 12 11 40 40 H 1.09005 * 108.87360 * 31.42410 * 22 8 6 41 41 H 1.08999 * 108.87529 * 149.86392 * 22 8 6 42 42 H 1.09006 * 110.48806 * 216.52595 * 23 4 3 43 43 H 1.09003 * 110.48612 * 93.88136 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 0.4358 5 1 4.4754 1.3010 -0.0965 6 6 3.8759 0.8816 1.9268 7 8 2.9597 1.2857 2.6111 8 7 5.0503 0.5513 2.4996 9 6 6.1912 0.1234 1.6558 10 6 7.1596 1.2287 1.5163 11 6 7.6888 1.7015 2.8807 12 7 6.6868 2.5362 3.4786 13 6 6.6672 3.8708 3.1726 14 1 7.0801 4.2163 2.2363 15 6 6.1167 4.7797 4.0658 16 7 5.9284 4.4360 5.3223 17 14 5.6432 6.4906 3.4845 18 1 5.9533 6.6257 2.0385 19 1 4.1891 6.7019 3.7002 20 1 6.4100 7.5042 4.2525 21 6 5.6674 1.9982 4.4206 22 6 5.1932 0.6087 3.9275 23 6 3.6898 -0.7378 0.0102 24 6 2.2235 -1.1098 0.0005 25 8 1.7947 -2.2442 -0.0108 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5143 0.8897 28 1 -0.3633 0.5134 -0.8903 29 1 1.8984 1.9384 0.7102 30 1 2.3309 1.6443 -0.9998 31 1 6.6816 -0.7325 2.1195 32 1 5.8234 -0.1647 0.6711 33 1 6.6753 2.0660 1.0138 34 1 7.9982 0.8888 0.9086 35 1 8.6080 2.2706 2.7424 36 1 7.8811 0.8405 3.5208 37 1 5.5441 5.0712 5.9466 38 1 4.8169 2.6786 4.4632 39 1 6.1055 1.9014 5.4140 40 1 4.2317 0.3805 4.3876 41 1 5.9186 -0.1426 4.2397 42 1 4.2326 -1.3459 0.7340 43 1 4.1195 -0.8530 -0.9849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981276708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:59 Heat of formation + Delta-G solvation = -51.587464 kcal Electronic energy + Delta-G solvation = -25671.791804 eV Core-core repulsion = 22138.235543 eV Total energy + Delta-G solvation = -3533.556261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07001 -40.51544 -38.60118 -37.26549 -36.10744 -34.08203 -33.85788 -32.61737 -29.55824 -28.67649 -27.74532 -27.05227 -25.57016 -24.49796 -22.57091 -21.45385 -20.71126 -19.89466 -18.71425 -18.25608 -17.82839 -17.23914 -17.07527 -16.57657 -16.29515 -16.02203 -15.55467 -15.25481 -14.99445 -14.69685 -14.63035 -14.55046 -14.03860 -13.86139 -13.49132 -13.44294 -13.22496 -13.10336 -13.08309 -12.86474 -12.74455 -12.52244 -12.31904 -12.15776 -12.05834 -11.78290 -11.68215 -11.36958 -10.95592 -10.69038 -10.49429 -9.75582 -9.50523 -8.64141 -7.84278 -5.27163 1.41425 1.44919 1.48344 1.52894 1.67284 2.06635 2.18316 2.51942 3.24489 3.30972 3.34731 3.47042 3.73824 3.84215 4.10596 4.26005 4.33419 4.36377 4.42384 4.44916 4.56030 4.63004 4.65306 4.68319 4.77643 4.80389 4.82993 4.85263 4.91847 5.00778 5.07974 5.32416 5.33292 5.46172 5.59479 5.61980 5.71909 5.88430 6.05775 6.41537 6.56269 7.07204 7.18399 7.30353 7.96950 8.39066 9.21200 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.005292 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.775821 B = 5289.546400 C = 5987.538655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.620 5.620 3 C 0.115 3.885 4 C -0.114 4.114 5 H 0.157 0.843 6 C 0.508 3.492 7 O -0.590 6.590 8 N -0.584 5.584 9 C 0.111 3.889 10 C -0.157 4.157 11 C 0.150 3.850 12 N -0.602 5.602 13 C -0.250 4.250 14 H 0.069 0.931 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.952 3.048 18 H -0.260 1.260 19 H -0.302 1.302 20 H -0.293 1.293 21 C 0.181 3.819 22 C 0.106 3.894 23 C -0.132 4.132 24 C 0.504 3.496 25 O -0.583 6.583 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.244 0.756 38 H 0.023 0.977 39 H 0.010 0.990 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -10.167 -15.126 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.352 5.352 3 C -0.007 4.007 4 C -0.136 4.136 5 H 0.174 0.826 6 C 0.297 3.703 7 O -0.470 6.470 8 N -0.314 5.314 9 C -0.010 4.010 10 C -0.198 4.198 11 C 0.023 3.977 12 N -0.325 5.325 13 C -0.381 4.381 14 H 0.087 0.913 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.782 3.218 18 H -0.184 1.184 19 H -0.230 1.230 20 H -0.220 1.220 21 C 0.055 3.945 22 C -0.020 4.020 23 C -0.171 4.171 24 C 0.293 3.707 25 O -0.464 6.464 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.119 -10.467 -14.648 18.127 hybrid contribution -0.572 1.527 0.905 1.865 sum -2.691 -8.940 -13.743 16.614 Atomic orbital electron populations 1.21665 0.77423 1.03238 1.02875 1.48301 1.07463 1.07566 1.71897 1.22148 0.88196 0.86871 1.03527 1.22353 1.00564 0.98911 0.91723 0.82588 1.20951 0.81916 0.76249 0.91159 1.90669 1.42824 1.47642 1.65913 1.47512 1.12160 1.65062 1.06689 1.21338 0.86079 0.97355 0.96194 1.21781 0.99883 0.98634 0.99500 1.20551 0.90517 0.93421 0.93173 1.43879 1.31253 1.04769 1.52567 1.19468 1.35113 0.84119 0.99406 0.91288 1.25675 1.03187 1.01042 0.94905 1.70196 1.49435 1.35953 1.02897 0.85417 0.76770 0.81078 0.78534 1.18405 1.22993 1.22047 1.21425 0.90899 0.91583 0.90592 1.21578 1.00603 0.98118 0.81702 1.22491 0.93192 0.93914 1.07552 1.21451 0.90884 0.83952 0.74366 1.90678 1.79674 1.22659 1.53393 0.91071 0.92281 0.89193 0.91021 0.86237 0.88956 0.86796 0.93281 0.88184 0.94446 0.93465 0.94682 0.95819 0.97242 0.92896 0.89491 0.87152 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.86 11.14 127.77 1.42 3.28 16 2 N -0.62 -14.91 3.33 -842.89 -2.81 -17.72 16 3 C 0.12 2.44 6.67 86.83 0.58 3.02 16 4 C -0.11 -2.39 2.50 -10.48 -0.03 -2.41 16 5 H 0.16 2.31 7.77 -2.39 -0.02 2.29 16 6 C 0.51 16.82 6.94 87.66 0.61 17.43 16 7 O -0.59 -25.78 15.12 -3.03 -0.05 -25.82 16 8 N -0.58 -18.18 2.44 -830.40 -2.02 -20.20 16 9 C 0.11 2.28 5.01 84.36 0.42 2.71 16 10 C -0.16 -3.91 5.65 29.18 0.16 -3.75 16 11 C 0.15 5.28 5.63 87.21 0.49 5.77 16 12 N -0.60 -28.21 2.53 -698.07 -1.77 -29.97 16 13 C -0.25 -13.29 9.25 84.03 0.78 -12.51 16 14 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 15 C -0.05 -3.00 4.87 84.86 0.41 -2.59 16 16 N -0.94 -56.89 11.12 21.65 0.24 -56.65 16 17 Si 0.95 45.73 29.59 68.60 2.03 47.76 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 C 0.18 8.81 5.19 86.56 0.45 9.26 16 22 C 0.11 3.94 5.23 87.55 0.46 4.40 16 23 C -0.13 -2.29 5.13 30.58 0.16 -2.13 16 24 C 0.50 13.35 8.02 87.90 0.71 14.06 16 25 O -0.58 -19.98 17.35 -3.02 -0.05 -20.03 16 26 H 0.07 1.60 7.53 -2.39 -0.02 1.59 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 1.96 7.04 -2.38 -0.02 1.94 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 32 H 0.11 1.50 4.78 -2.39 -0.01 1.49 16 33 H 0.05 1.44 7.91 -2.39 -0.02 1.43 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 36 H 0.05 1.53 7.59 -2.39 -0.02 1.51 16 37 H 0.24 14.57 8.31 -92.70 -0.77 13.80 16 38 H 0.02 1.37 6.63 -2.39 -0.02 1.36 16 39 H 0.01 0.51 8.00 -2.39 -0.02 0.49 16 40 H 0.05 2.13 7.42 -2.38 -0.02 2.12 16 41 H 0.09 2.70 7.73 -2.39 -0.02 2.68 16 42 H 0.11 1.94 6.83 -2.38 -0.02 1.92 16 43 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -81.56 336.24 3.20 -78.36 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.00 Total: 7.75 kcal Atomic # 6 Polarization: 29.90 SS G_CDS: 6.62 Total: 36.53 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -6.36 Total: -124.54 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.10 Total: -45.86 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.56 3.20 -78.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981276708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.772 kcal (2) G-P(sol) polarization free energy of solvation -81.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds