Wall clock time and date at job start Tue Mar 31 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34418 * 124.34859 * 2 1 4 4 O 1.21282 * 124.94310 * 0.40257 * 3 2 1 5 5 C 1.51287 * 110.11487 * 180.38648 * 3 2 1 6 6 C 1.54622 * 104.19515 * 16.25012 * 5 3 2 7 7 C 1.46761 * 124.35250 * 179.97438 * 2 1 3 8 8 H 1.09005 * 110.24328 * 43.91334 * 7 2 1 9 9 C 1.50702 * 110.24350 * 282.00784 * 7 2 1 10 10 O 1.21284 * 120.00089 * 335.26450 * 9 7 2 11 11 N 1.34777 * 120.00027 * 155.26394 * 9 7 2 12 12 C 1.47983 * 119.99931 * 185.26462 * 11 9 7 13 13 C 1.47135 * 110.42620 * 102.40562 * 12 11 9 14 14 C 1.53799 * 111.77913 * 58.34675 * 13 12 11 15 15 N 1.43470 * 107.95973 * 281.70827 * 14 13 12 16 16 C 1.36940 * 118.93636 * 273.63024 * 15 14 13 17 17 H 1.08001 * 119.99943 * 138.49893 * 16 15 14 18 18 C 1.38806 * 120.00243 * 318.49488 * 16 15 14 19 19 N 1.31617 * 120.00135 * 159.46712 * 18 16 15 20 20 Si 1.86806 * 119.99919 * 339.46163 * 18 16 15 21 21 H 1.48495 * 109.46992 * 95.28457 * 20 18 16 22 22 H 1.48499 * 109.47398 * 215.29088 * 20 18 16 23 23 H 1.48501 * 109.46747 * 335.28658 * 20 18 16 24 24 C 1.48862 * 122.12018 * 93.60169 * 15 14 13 25 25 C 1.43619 * 119.97050 * 5.23810 * 11 9 7 26 26 H 1.08996 * 109.47272 * 270.02790 * 1 2 3 27 27 H 1.09002 * 109.46618 * 30.02339 * 1 2 3 28 28 H 1.08993 * 109.47072 * 150.02153 * 1 2 3 29 29 H 1.09001 * 110.48698 * 134.92791 * 5 3 2 30 30 H 1.09001 * 110.47930 * 257.44052 * 5 3 2 31 31 H 1.08997 * 110.96932 * 217.08526 * 6 5 3 32 32 H 1.08996 * 110.96781 * 93.32099 * 6 5 3 33 33 H 1.09009 * 109.21199 * 342.16137 * 12 11 9 34 34 H 1.08994 * 109.34862 * 222.74941 * 12 11 9 35 35 H 1.08993 * 109.01097 * 297.76982 * 13 12 11 36 36 H 1.09007 * 109.00752 * 178.90803 * 13 12 11 37 37 H 1.08993 * 109.76585 * 41.32101 * 14 13 12 38 38 H 1.09001 * 109.76612 * 162.04101 * 14 13 12 39 39 H 0.97005 * 119.99512 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47410 * 80.63023 * 24 15 14 41 41 H 1.09003 * 109.47843 * 200.65762 * 24 15 14 42 42 H 1.09006 * 108.87431 * 149.90691 * 25 11 9 43 43 H 1.08998 * 108.87633 * 31.47309 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 0.0070 5 6 3.6898 0.7378 -0.0096 6 6 3.7012 -0.7487 -0.4348 7 6 2.2932 -1.2116 0.0005 8 1 1.8978 -1.9391 -0.7085 9 6 2.3446 -1.8075 1.3838 10 8 2.1584 -1.1043 2.3543 11 7 2.5974 -3.1218 1.5424 12 6 2.5330 -3.7303 2.8898 13 6 1.2769 -4.4783 3.0560 14 6 1.1264 -5.5834 1.9970 15 7 0.7065 -4.9674 0.7713 16 6 -0.6305 -4.7633 0.5564 17 1 -0.9715 -3.8387 0.1146 18 6 -1.5475 -5.7448 0.9063 19 7 -2.8123 -5.4292 1.0876 20 14 -0.9863 -7.5138 1.1198 21 1 -0.7042 -7.7738 2.5544 22 1 -2.0550 -8.4322 0.6510 23 1 0.2464 -7.7415 0.3237 24 6 1.6773 -4.5423 -0.2741 25 6 2.9287 -3.9313 0.4033 26 1 -0.3633 0.0005 1.0276 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 4.2329 1.3457 -0.7332 30 1 4.1196 0.8555 0.9852 31 1 4.4754 -1.3009 0.0979 32 1 3.8274 -0.8450 -1.5131 33 1 2.5862 -2.9430 3.6419 34 1 3.3765 -4.4081 3.0207 35 1 0.4383 -3.7874 2.9698 36 1 1.2623 -4.9320 4.0470 37 1 2.0829 -6.0845 1.8488 38 1 0.3783 -6.3063 2.3223 39 1 -3.4530 -6.1152 1.3325 40 1 1.9716 -5.4065 -0.8696 41 1 1.2129 -3.7969 -0.9198 42 1 3.5859 -4.7395 0.7242 43 1 3.4586 -3.3164 -0.3242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981770650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:48 Heat of formation + Delta-G solvation = -47.723531 kcal Electronic energy + Delta-G solvation = -25971.187248 eV Core-core repulsion = 22437.798539 eV Total energy + Delta-G solvation = -3533.388709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16545 -40.56820 -38.75481 -37.30278 -36.07586 -34.21812 -33.65371 -33.52329 -29.71961 -29.08990 -27.72353 -27.15261 -25.44876 -24.32737 -22.70750 -21.79501 -20.95383 -19.92047 -18.67791 -18.50198 -17.85665 -17.55639 -17.12189 -16.72739 -16.50264 -16.02172 -15.47614 -15.24451 -15.06856 -14.85598 -14.77142 -14.51339 -14.32630 -14.00469 -13.84107 -13.66628 -13.54242 -13.32366 -13.27783 -12.77697 -12.62949 -12.41389 -12.38428 -12.20878 -11.92518 -11.84624 -11.59466 -11.45063 -11.13289 -10.92830 -10.60670 -9.80514 -9.59253 -8.60561 -8.16851 -5.58893 1.31684 1.33397 1.42984 1.54098 1.56252 1.91506 2.22615 2.44261 3.10216 3.26583 3.40107 3.44160 3.57174 3.89386 4.06691 4.13117 4.21802 4.23072 4.27206 4.32749 4.39390 4.49099 4.51935 4.68394 4.69425 4.71797 4.78241 4.85663 4.92912 4.96664 5.04134 5.08735 5.16269 5.18198 5.29246 5.45077 5.72585 5.99975 6.00857 6.19433 6.51052 7.00762 7.10283 7.19397 7.71604 8.06225 9.02740 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.005432 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.293111 B = 5153.613783 C = 5650.178100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.604 5.604 3 C 0.508 3.492 4 O -0.584 6.584 5 C -0.145 4.145 6 C -0.103 4.103 7 C 0.107 3.893 8 H 0.126 0.874 9 C 0.503 3.497 10 O -0.585 6.585 11 N -0.583 5.583 12 C 0.130 3.870 13 C -0.155 4.155 14 C 0.147 3.853 15 N -0.613 5.613 16 C -0.250 4.250 17 H 0.028 0.972 18 C -0.025 4.025 19 N -0.956 5.956 20 Si 0.953 3.047 21 H -0.281 1.281 22 H -0.316 1.316 23 H -0.246 1.246 24 C 0.115 3.885 25 C 0.088 3.912 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.337 1.440 -4.727 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.336 5.336 3 C 0.299 3.701 4 O -0.465 6.465 5 C -0.184 4.184 6 C -0.141 4.141 7 C 0.000 4.000 8 H 0.144 0.856 9 C 0.290 3.710 10 O -0.465 6.465 11 N -0.313 5.313 12 C 0.008 3.992 13 C -0.196 4.196 14 C 0.021 3.979 15 N -0.337 5.337 16 C -0.381 4.381 17 H 0.046 0.954 18 C -0.221 4.221 19 N -0.600 5.600 20 Si 0.782 3.218 21 H -0.208 1.208 22 H -0.246 1.246 23 H -0.170 1.170 24 C -0.009 4.009 25 C -0.037 4.037 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.152 0.848 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.832 2.314 -4.207 20.405 hybrid contribution -1.642 -0.761 0.706 1.942 sum 18.190 1.553 -3.502 18.589 Atomic orbital electron populations 1.21482 0.78350 1.03552 1.00931 1.48058 1.06518 1.07067 1.71913 1.21773 0.91414 0.83499 0.73427 1.90661 1.80080 1.22771 1.52969 1.22379 0.91204 0.98951 1.05902 1.22765 0.91870 0.93807 1.05623 1.22040 0.95688 0.88215 0.94105 0.85612 1.21384 0.75376 0.82478 0.91772 1.90659 1.51239 1.61605 1.43024 1.47464 1.67490 1.07213 1.09146 1.20568 0.97910 0.96995 0.83685 1.21601 0.98020 0.99538 1.00398 1.20758 0.98147 0.93161 0.85838 1.43970 1.02188 1.71967 1.15590 1.18543 0.82808 0.97857 1.38846 0.95401 1.26223 0.94770 1.02091 0.99044 1.70026 1.04439 1.34443 1.51142 0.85706 0.77633 0.80777 0.77702 1.20803 1.24575 1.16963 1.22482 0.89874 0.98082 0.90487 1.22101 0.96705 0.96577 0.88302 0.95076 0.90030 0.90101 0.84826 0.87742 0.86232 0.84688 0.91636 0.87378 0.96233 0.90857 0.90119 0.95972 0.93189 0.92427 0.93065 0.87720 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.28 10.95 127.77 1.40 4.68 16 2 N -0.60 -18.38 2.62 -823.08 -2.15 -20.53 16 3 C 0.51 15.67 8.02 87.90 0.71 16.37 16 4 O -0.58 -22.91 17.60 -3.04 -0.05 -22.96 16 5 C -0.14 -2.67 6.85 30.59 0.21 -2.46 16 6 C -0.10 -1.31 5.89 31.65 0.19 -1.12 16 7 C 0.11 2.51 2.54 44.70 0.11 2.62 16 8 H 0.13 2.67 5.75 -2.38 -0.01 2.65 16 9 C 0.50 15.30 6.77 87.66 0.59 15.89 16 10 O -0.59 -23.46 16.07 -3.04 -0.05 -23.51 16 11 N -0.58 -15.31 2.45 -831.84 -2.04 -17.35 16 12 C 0.13 3.58 5.71 84.27 0.48 4.06 16 13 C -0.15 -5.43 5.64 29.04 0.16 -5.27 16 14 C 0.15 5.38 4.54 87.21 0.40 5.78 16 15 N -0.61 -24.76 2.06 -698.07 -1.44 -26.20 16 16 C -0.25 -13.26 9.53 84.03 0.80 -12.46 16 17 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 18 C -0.03 -1.43 5.30 84.86 0.45 -0.98 16 19 N -0.96 -59.34 13.97 21.65 0.30 -59.04 16 20 Si 0.95 44.15 25.10 68.60 1.72 45.87 16 21 H -0.28 -12.57 6.72 99.48 0.67 -11.91 16 22 H -0.32 -15.27 7.11 99.48 0.71 -14.56 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 24 C 0.12 3.26 6.70 86.56 0.58 3.84 16 25 C 0.09 1.65 4.82 87.55 0.42 2.07 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 2.54 7.93 -2.39 -0.02 2.52 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.12 0.99 7.74 -2.39 -0.02 0.98 16 32 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 2.03 7.07 -2.38 -0.02 2.01 16 34 H 0.11 2.06 8.05 -2.39 -0.02 2.04 16 35 H 0.02 0.88 7.91 -2.39 -0.02 0.87 16 36 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.08 2.28 7.59 -2.39 -0.02 2.26 16 38 H 0.02 0.95 3.37 -2.39 -0.01 0.94 16 39 H 0.26 15.39 8.31 -92.70 -0.77 14.61 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.51 6.68 -2.39 -0.02 1.50 16 42 H 0.10 1.45 7.73 -2.38 -0.02 1.43 16 43 H 0.12 1.23 6.02 -2.39 -0.01 1.22 16 Total: -1.00 -83.95 333.27 3.76 -80.19 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.97 Total: 10.51 kcal Atomic # 6 Polarization: 26.52 SS G_CDS: 6.50 Total: 33.03 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -5.33 Total: -123.13 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.10 Total: -46.47 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.72 Total: 45.87 kcal Total: -83.95 3.76 -80.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981770650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.468 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds