Wall clock time and date at job start Tue Mar 31 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99714 * 2 1 4 4 H 1.08001 * 120.00004 * 143.64212 * 3 2 1 5 5 C 1.38810 * 120.00081 * 323.64595 * 3 2 1 6 6 N 1.31620 * 120.00291 * 155.74128 * 5 3 2 7 7 Si 1.86808 * 119.99936 * 335.74046 * 5 3 2 8 8 H 1.48497 * 109.47014 * 95.48446 * 7 5 3 9 9 H 1.48494 * 109.47218 * 215.48506 * 7 5 3 10 10 H 1.48496 * 109.47081 * 335.48518 * 7 5 3 11 11 C 1.46489 * 120.00225 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.46212 * 300.00373 * 11 2 1 13 13 C 1.53189 * 109.31378 * 181.38617 * 12 11 2 14 14 N 1.46929 * 108.77735 * 305.35994 * 13 12 11 15 15 C 1.34773 * 120.63454 * 233.58681 * 14 13 12 16 16 O 1.21284 * 120.00072 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99879 * 180.27701 * 15 14 13 18 18 H 1.08994 * 115.55480 * 54.51911 * 17 15 14 19 19 C 1.53005 * 117.49630 * 200.18591 * 17 15 14 20 20 C 1.53000 * 117.49799 * 268.84381 * 17 15 14 21 21 H 1.09001 * 117.49809 * 144.99657 * 20 17 15 22 22 C 1.50708 * 117.49897 * 0.02562 * 20 17 15 23 23 N 1.34775 * 120.00090 * 179.12412 * 22 20 17 24 24 O 1.21280 * 119.99943 * 359.12832 * 22 20 17 25 25 C 1.46927 * 118.73499 * 53.86228 * 14 13 12 26 26 C 1.53042 * 109.46170 * 60.07034 * 11 2 1 27 27 H 1.08995 * 109.47420 * 270.02357 * 1 2 3 28 28 H 1.09001 * 109.47410 * 30.02439 * 1 2 3 29 29 H 1.09007 * 109.46731 * 150.02221 * 1 2 3 30 30 H 0.97001 * 120.00260 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.45044 * 180.02562 * 11 2 1 32 32 H 1.09000 * 109.49796 * 61.42918 * 12 11 2 33 33 H 1.09001 * 109.52199 * 301.34889 * 12 11 2 34 34 H 1.09000 * 109.58720 * 185.57870 * 13 12 11 35 35 H 1.09004 * 109.58660 * 65.15135 * 13 12 11 36 36 H 1.08998 * 117.50146 * 214.97325 * 19 17 15 37 37 H 1.08994 * 117.50054 * 0.02562 * 19 17 15 38 38 H 0.96998 * 119.99670 * 0.02562 * 23 22 20 39 39 H 0.96995 * 120.00271 * 179.97438 * 23 22 20 40 40 H 1.09003 * 109.58995 * 65.92454 * 25 14 13 41 41 H 1.08997 * 109.59098 * 186.35198 * 25 14 13 42 42 H 1.09002 * 109.49506 * 298.56873 * 26 11 2 43 43 H 1.09001 * 109.49751 * 58.63077 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0720 1.2771 0.5545 5 6 1.6582 2.2711 -0.7126 6 7 1.9971 3.4946 -0.3653 7 14 0.5158 1.9950 -2.1646 8 1 -0.8943 2.1164 -1.7150 9 1 0.7909 3.0118 -3.2113 10 1 0.7425 0.6373 -2.7216 11 6 2.1975 -1.2686 0.0006 12 6 1.8276 -2.0704 1.2505 13 6 2.6213 -3.3806 1.2653 14 7 2.3850 -4.0910 0.0010 15 6 1.9590 -5.3696 0.0009 16 8 1.7664 -5.9447 1.0512 17 6 1.7272 -6.0864 -1.3042 18 1 2.5722 -6.0948 -1.9925 19 6 0.8223 -7.3200 -1.2815 20 6 0.3237 -6.0160 -1.9093 21 1 0.2455 -5.9778 -2.9958 22 6 -0.7210 -5.2345 -1.1548 23 7 -1.9693 -5.1247 -1.6509 24 8 -0.4383 -4.7043 -0.1013 25 6 2.6280 -3.3828 -1.2632 26 6 1.8290 -2.0707 -1.2496 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6540 4.2529 -0.8635 31 1 3.2691 -1.0690 0.0009 32 1 0.7604 -2.2916 1.2382 33 1 2.0685 -1.4892 2.1406 34 1 2.2899 -3.9992 2.0993 35 1 3.6843 -3.1627 1.3690 36 1 1.0718 -8.1396 -1.9554 37 1 0.3944 -7.6128 -0.3228 38 1 -2.1954 -5.5491 -2.4933 39 1 -2.6417 -4.6221 -1.1652 40 1 3.6915 -3.1651 -1.3616 41 1 2.3011 -4.0027 -2.0980 42 1 0.7617 -2.2919 -1.2384 43 1 2.0707 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985650564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:52 Heat of formation + Delta-G solvation = -14.472136 kcal Electronic energy + Delta-G solvation = -25533.985981 eV Core-core repulsion = 22002.039161 eV Total energy + Delta-G solvation = -3531.946820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68955 -39.08599 -37.55845 -35.94127 -35.03555 -33.74381 -32.10254 -30.75894 -30.29040 -26.22453 -25.77225 -24.82939 -23.82804 -22.65478 -21.63203 -20.54358 -19.58239 -18.53082 -17.72519 -17.24828 -16.76620 -16.24796 -15.49750 -15.35706 -15.32310 -14.75956 -14.22703 -14.12931 -14.05891 -13.53325 -13.32107 -13.03311 -12.68015 -12.66087 -12.25514 -12.18149 -11.97889 -11.70814 -11.60657 -10.96571 -10.90082 -10.80047 -10.71295 -10.45677 -10.21448 -10.04651 -9.99235 -9.82301 -9.69170 -9.56852 -9.43459 -8.48355 -8.22896 -6.76873 -5.97729 -3.34895 2.26758 2.84433 3.08882 3.32740 3.37036 3.46368 3.52104 3.68932 4.40532 4.45920 4.50299 4.55077 4.75286 4.93202 5.03904 5.16870 5.29690 5.34451 5.36162 5.51195 5.54359 5.70856 5.75455 5.82149 5.93351 6.07334 6.18376 6.30756 6.39192 6.46378 6.55680 6.61533 6.62389 6.79584 6.82573 7.04759 7.07047 7.14136 7.75666 8.08179 8.14510 8.41028 8.51884 9.03048 9.75336 10.18365 11.18337 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.005031 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.419568 B = 5563.825335 C = 6191.817191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.605 5.605 3 C -0.266 4.266 4 H 0.078 0.922 5 C 0.034 3.966 6 N -0.900 5.900 7 Si 0.880 3.120 8 H -0.289 1.289 9 H -0.304 1.304 10 H -0.270 1.270 11 C 0.180 3.820 12 C -0.142 4.142 13 C 0.122 3.878 14 N -0.595 5.595 15 C 0.563 3.437 16 O -0.546 6.546 17 C -0.155 4.155 18 H 0.134 0.866 19 C -0.119 4.119 20 C -0.176 4.176 21 H 0.131 0.869 22 C 0.534 3.466 23 N -0.853 5.853 24 O -0.507 6.507 25 C 0.114 3.886 26 C -0.148 4.148 27 H 0.013 0.987 28 H 0.040 0.960 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.399 0.601 39 H 0.404 0.596 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -21.484 -7.443 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.328 5.328 3 C -0.394 4.394 4 H 0.096 0.904 5 C -0.166 4.166 6 N -0.541 5.541 7 Si 0.711 3.289 8 H -0.217 1.217 9 H -0.232 1.232 10 H -0.195 1.195 11 C 0.073 3.927 12 C -0.182 4.182 13 C -0.001 4.001 14 N -0.328 5.328 15 C 0.351 3.649 16 O -0.424 6.424 17 C -0.176 4.176 18 H 0.151 0.849 19 C -0.157 4.157 20 C -0.198 4.198 21 H 0.149 0.851 22 C 0.317 3.683 23 N -0.417 5.417 24 O -0.380 6.380 25 C -0.010 4.010 26 C -0.188 4.188 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.227 0.773 39 H 0.235 0.765 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.479 -21.277 -6.218 22.438 hybrid contribution -1.246 0.201 -1.468 1.936 sum -4.725 -21.075 -7.685 22.925 Atomic orbital electron populations 1.21241 0.85138 0.98451 0.98141 1.44096 1.00408 1.01701 1.86547 1.18809 1.08617 0.86724 1.25299 0.90403 1.25447 0.98112 0.95132 0.97925 1.69904 1.46859 0.97700 1.39672 0.86889 0.80115 0.77481 0.84408 1.21705 1.23193 1.19545 1.20408 0.96269 0.85298 0.90768 1.22373 1.00638 0.94685 1.00459 1.21544 0.99056 0.93479 0.86014 1.47811 1.66065 1.11352 1.07530 1.19005 0.75651 0.81329 0.88939 1.90627 1.52269 1.66529 1.32931 1.22265 0.94135 1.02436 0.98794 0.84851 1.23022 0.99875 0.89824 1.03003 1.22348 0.94192 1.02903 1.00364 0.85113 1.19617 0.83002 0.80277 0.85360 1.43693 1.12425 1.58002 1.27606 1.90880 1.79398 1.45662 1.22083 1.21802 0.99882 0.94040 0.85260 1.22556 1.00084 0.94853 1.01299 0.96836 0.94131 0.95272 0.92801 0.91210 0.91775 0.91059 0.89727 0.92080 0.86898 0.87094 0.77275 0.76535 0.91503 0.90921 0.92177 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.66 8.65 59.85 0.52 3.18 16 2 N -0.60 -14.66 2.38 -173.44 -0.41 -15.07 16 3 C -0.27 -7.51 9.82 -15.06 -0.15 -7.65 16 4 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 5 C 0.03 0.99 5.28 -17.43 -0.09 0.90 16 6 N -0.90 -27.70 13.97 55.49 0.78 -26.93 16 7 Si 0.88 22.44 25.13 -169.99 -4.27 18.17 16 8 H -0.29 -7.26 6.65 56.52 0.38 -6.88 16 9 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.18 3.61 2.55 -67.89 -0.17 3.44 16 12 C -0.14 -2.64 5.34 -26.61 -0.14 -2.78 16 13 C 0.12 2.01 6.43 -3.71 -0.02 1.98 16 14 N -0.60 -9.23 2.85 -172.50 -0.49 -9.72 16 15 C 0.56 8.80 4.72 -10.99 -0.05 8.75 16 16 O -0.55 -10.49 15.63 -7.43 -0.12 -10.60 16 17 C -0.15 -1.66 4.31 -91.77 -0.40 -2.05 16 18 H 0.13 1.05 7.84 -51.93 -0.41 0.65 16 19 C -0.12 -1.04 9.75 -26.69 -0.26 -1.30 16 20 C -0.18 -1.57 6.18 -91.73 -0.57 -2.14 16 21 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 22 C 0.53 6.41 7.86 -10.98 -0.09 6.33 16 23 N -0.85 -6.84 8.87 31.22 0.28 -6.56 16 24 O -0.51 -8.71 14.68 -7.43 -0.11 -8.82 16 25 C 0.11 1.57 6.37 -3.48 -0.02 1.55 16 26 C -0.15 -2.58 5.33 -26.38 -0.14 -2.72 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 1.00 3.26 -51.93 -0.17 0.83 16 29 H 0.03 0.61 6.46 -51.92 -0.34 0.28 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 32 H 0.06 1.31 7.72 -51.93 -0.40 0.91 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.49 7.01 -51.93 -0.36 1.13 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.11 1.23 7.82 -51.93 -0.41 0.82 16 38 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 39 H 0.40 3.22 8.93 -40.82 -0.36 2.85 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.82 6.12 -51.93 -0.32 0.50 16 42 H 0.06 1.13 6.73 -51.93 -0.35 0.78 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -36.78 338.92 -7.25 -44.03 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.43 Total: 2.91 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.59 Total: 7.48 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.15 Total: -58.28 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.23 Total: -19.42 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.27 Total: 18.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.78 -7.25 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985650564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.561 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds