Wall clock time and date at job start Tue Mar 31 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99714 * 2 1 4 4 H 1.08001 * 120.00004 * 143.64212 * 3 2 1 5 5 C 1.38810 * 120.00081 * 323.64595 * 3 2 1 6 6 N 1.31620 * 120.00291 * 155.74128 * 5 3 2 7 7 Si 1.86808 * 119.99936 * 335.74046 * 5 3 2 8 8 H 1.48497 * 109.47014 * 95.48446 * 7 5 3 9 9 H 1.48494 * 109.47218 * 215.48506 * 7 5 3 10 10 H 1.48496 * 109.47081 * 335.48518 * 7 5 3 11 11 C 1.46489 * 120.00225 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.46212 * 300.00373 * 11 2 1 13 13 C 1.53189 * 109.31378 * 181.38617 * 12 11 2 14 14 N 1.46929 * 108.77735 * 305.35994 * 13 12 11 15 15 C 1.34773 * 120.63454 * 233.58681 * 14 13 12 16 16 O 1.21284 * 120.00072 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99879 * 180.27701 * 15 14 13 18 18 H 1.08994 * 115.55480 * 54.51911 * 17 15 14 19 19 C 1.53005 * 117.49630 * 200.18591 * 17 15 14 20 20 C 1.53000 * 117.49799 * 268.84381 * 17 15 14 21 21 H 1.09001 * 117.49809 * 144.99657 * 20 17 15 22 22 C 1.50708 * 117.49897 * 0.02562 * 20 17 15 23 23 N 1.34775 * 120.00090 * 179.12412 * 22 20 17 24 24 O 1.21280 * 119.99943 * 359.12832 * 22 20 17 25 25 C 1.46927 * 118.73499 * 53.86228 * 14 13 12 26 26 C 1.53042 * 109.46170 * 60.07034 * 11 2 1 27 27 H 1.08995 * 109.47420 * 270.02357 * 1 2 3 28 28 H 1.09001 * 109.47410 * 30.02439 * 1 2 3 29 29 H 1.09007 * 109.46731 * 150.02221 * 1 2 3 30 30 H 0.97001 * 120.00260 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.45044 * 180.02562 * 11 2 1 32 32 H 1.09000 * 109.49796 * 61.42918 * 12 11 2 33 33 H 1.09001 * 109.52199 * 301.34889 * 12 11 2 34 34 H 1.09000 * 109.58720 * 185.57870 * 13 12 11 35 35 H 1.09004 * 109.58660 * 65.15135 * 13 12 11 36 36 H 1.08998 * 117.50146 * 214.97325 * 19 17 15 37 37 H 1.08994 * 117.50054 * 0.02562 * 19 17 15 38 38 H 0.96998 * 119.99670 * 0.02562 * 23 22 20 39 39 H 0.96995 * 120.00271 * 179.97438 * 23 22 20 40 40 H 1.09003 * 109.58995 * 65.92454 * 25 14 13 41 41 H 1.08997 * 109.59098 * 186.35198 * 25 14 13 42 42 H 1.09002 * 109.49506 * 298.56873 * 26 11 2 43 43 H 1.09001 * 109.49751 * 58.63077 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0720 1.2771 0.5545 5 6 1.6582 2.2711 -0.7126 6 7 1.9971 3.4946 -0.3653 7 14 0.5158 1.9950 -2.1646 8 1 -0.8943 2.1164 -1.7150 9 1 0.7909 3.0118 -3.2113 10 1 0.7425 0.6373 -2.7216 11 6 2.1975 -1.2686 0.0006 12 6 1.8276 -2.0704 1.2505 13 6 2.6213 -3.3806 1.2653 14 7 2.3850 -4.0910 0.0010 15 6 1.9590 -5.3696 0.0009 16 8 1.7664 -5.9447 1.0512 17 6 1.7272 -6.0864 -1.3042 18 1 2.5722 -6.0948 -1.9925 19 6 0.8223 -7.3200 -1.2815 20 6 0.3237 -6.0160 -1.9093 21 1 0.2455 -5.9778 -2.9958 22 6 -0.7210 -5.2345 -1.1548 23 7 -1.9693 -5.1247 -1.6509 24 8 -0.4383 -4.7043 -0.1013 25 6 2.6280 -3.3828 -1.2632 26 6 1.8290 -2.0707 -1.2496 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6540 4.2529 -0.8635 31 1 3.2691 -1.0690 0.0009 32 1 0.7604 -2.2916 1.2382 33 1 2.0685 -1.4892 2.1406 34 1 2.2899 -3.9992 2.0993 35 1 3.6843 -3.1627 1.3690 36 1 1.0718 -8.1396 -1.9554 37 1 0.3944 -7.6128 -0.3228 38 1 -2.1954 -5.5491 -2.4933 39 1 -2.6417 -4.6221 -1.1652 40 1 3.6915 -3.1651 -1.3616 41 1 2.3011 -4.0027 -2.0980 42 1 0.7617 -2.2919 -1.2384 43 1 2.0707 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985650564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:51 Heat of formation + Delta-G solvation = -42.750795 kcal Electronic energy + Delta-G solvation = -25535.212236 eV Core-core repulsion = 22002.039161 eV Total energy + Delta-G solvation = -3533.173075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67991 -40.21047 -38.96863 -36.93894 -36.59434 -34.55917 -34.05309 -32.27164 -31.86423 -28.11829 -27.14579 -25.84839 -24.98091 -24.07620 -23.09641 -21.39619 -20.95055 -19.66597 -18.90129 -18.76591 -17.97800 -17.44014 -17.28584 -16.51841 -16.23019 -15.98388 -15.85589 -15.26591 -15.17206 -15.03905 -14.81408 -14.41670 -14.31369 -14.21876 -13.94953 -13.60246 -13.29225 -13.07441 -12.98656 -12.61523 -12.39221 -12.16088 -12.07575 -11.86113 -11.59597 -11.57898 -11.44436 -11.31684 -10.98968 -10.65734 -10.61726 -10.59620 -9.50828 -8.79318 -8.21540 -5.56872 1.30073 1.39059 1.42351 1.52198 1.81809 2.08752 2.42288 2.60559 2.88636 3.01699 3.32440 3.55857 3.73776 3.78668 3.91968 4.05493 4.10505 4.20722 4.28468 4.38026 4.39096 4.47818 4.57072 4.70698 4.74450 4.78482 4.82488 4.85935 4.86653 4.90658 5.01529 5.07683 5.12117 5.34783 5.45420 5.69198 5.90652 5.92016 6.16357 6.51330 6.61357 6.95871 7.35910 7.42627 7.61685 8.06383 8.98466 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.005031 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.419568 B = 5563.825335 C = 6191.817191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.615 5.615 3 C -0.261 4.261 4 H 0.042 0.958 5 C -0.020 4.020 6 N -0.948 5.948 7 Si 0.947 3.053 8 H -0.283 1.283 9 H -0.306 1.306 10 H -0.252 1.252 11 C 0.176 3.824 12 C -0.126 4.126 13 C 0.128 3.872 14 N -0.599 5.599 15 C 0.555 3.445 16 O -0.594 6.594 17 C -0.172 4.172 18 H 0.173 0.827 19 C -0.107 4.107 20 C -0.162 4.162 21 H 0.180 0.820 22 C 0.519 3.481 23 N -0.835 5.835 24 O -0.570 6.570 25 C 0.119 3.881 26 C -0.136 4.136 27 H 0.009 0.991 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.077 0.923 38 H 0.419 0.581 39 H 0.403 0.597 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 -24.248 -11.049 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.338 5.338 3 C -0.390 4.390 4 H 0.060 0.940 5 C -0.217 4.217 6 N -0.592 5.592 7 Si 0.776 3.224 8 H -0.210 1.210 9 H -0.234 1.234 10 H -0.176 1.176 11 C 0.070 3.930 12 C -0.166 4.166 13 C 0.004 3.996 14 N -0.330 5.330 15 C 0.345 3.655 16 O -0.475 6.475 17 C -0.193 4.193 18 H 0.190 0.810 19 C -0.145 4.145 20 C -0.183 4.183 21 H 0.197 0.803 22 C 0.304 3.696 23 N -0.399 5.399 24 O -0.449 6.449 25 C -0.003 4.003 26 C -0.176 4.176 27 H 0.028 0.972 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.175 0.825 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.234 0.766 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.027 -24.102 -9.892 26.362 hybrid contribution -1.122 1.036 -0.195 1.539 sum -5.149 -23.066 -10.087 25.697 Atomic orbital electron populations 1.21217 0.84505 0.98806 0.98105 1.44183 1.00926 1.01933 1.86805 1.18694 1.07551 0.88471 1.24329 0.94019 1.26055 1.00651 0.94622 1.00346 1.70029 1.49418 0.98676 1.41034 0.85815 0.78186 0.77984 0.80458 1.21045 1.23433 1.17591 1.20550 0.95508 0.84097 0.92839 1.22164 0.99599 0.95567 0.99306 1.21343 0.99407 0.91965 0.86872 1.47902 1.66059 1.11712 1.07372 1.19915 0.74068 0.81077 0.90425 1.90598 1.53993 1.67567 1.35354 1.22378 0.96468 1.03430 0.97004 0.80999 1.23119 0.98331 0.90616 1.02443 1.22542 0.91568 1.01924 1.02245 0.80294 1.20331 0.84438 0.79942 0.84893 1.43599 1.11318 1.56900 1.28063 1.90868 1.80613 1.48525 1.24845 1.21911 1.00424 0.92420 0.85573 1.22359 0.99970 0.96271 0.98994 0.97231 0.95340 0.93011 0.92786 0.91804 0.93850 0.92546 0.91448 0.90382 0.82523 0.90387 0.74918 0.76600 0.89600 0.87146 0.93289 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.41 8.65 127.77 1.10 6.52 16 2 N -0.61 -29.92 2.38 -702.63 -1.67 -31.59 16 3 C -0.26 -15.06 9.82 84.03 0.83 -14.23 16 4 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 5 C -0.02 -1.19 5.28 84.86 0.45 -0.74 16 6 N -0.95 -59.78 13.97 21.65 0.30 -59.48 16 7 Si 0.95 46.25 25.13 68.60 1.72 47.97 16 8 H -0.28 -13.45 6.65 99.48 0.66 -12.79 16 9 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 10 H -0.25 -11.45 7.11 99.48 0.71 -10.74 16 11 C 0.18 7.02 2.55 45.02 0.11 7.13 16 12 C -0.13 -4.82 5.34 30.67 0.16 -4.65 16 13 C 0.13 4.24 6.43 86.36 0.56 4.80 16 14 N -0.60 -17.64 2.85 -818.06 -2.33 -19.97 16 15 C 0.55 16.54 4.72 87.66 0.41 16.96 16 16 O -0.59 -23.13 15.63 9.37 0.15 -22.99 16 17 C -0.17 -2.98 4.31 -11.54 -0.05 -3.03 16 18 H 0.17 1.64 7.84 -2.39 -0.02 1.62 16 19 C -0.11 -1.45 9.75 30.62 0.30 -1.16 16 20 C -0.16 -2.13 6.18 -11.51 -0.07 -2.20 16 21 H 0.18 0.66 8.14 -2.39 -0.02 0.64 16 22 C 0.52 11.22 7.86 87.66 0.69 11.91 16 23 N -0.84 -11.09 8.87 -173.53 -1.54 -12.63 16 24 O -0.57 -19.38 14.68 9.38 0.14 -19.24 16 25 C 0.12 2.89 6.37 86.51 0.55 3.44 16 26 C -0.14 -4.44 5.33 30.82 0.16 -4.28 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.03 1.37 3.26 -2.39 -0.01 1.36 16 29 H 0.05 2.12 6.46 -2.38 -0.02 2.11 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.06 2.61 7.89 -2.39 -0.02 2.59 16 32 H 0.04 1.82 7.72 -2.39 -0.02 1.80 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.48 7.01 -2.39 -0.02 2.46 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 1.63 7.82 -2.39 -0.02 1.61 16 38 H 0.42 2.05 8.83 -92.71 -0.82 1.23 16 39 H 0.40 5.71 8.93 -92.71 -0.83 4.89 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.11 1.89 6.12 -2.39 -0.01 1.88 16 42 H 0.05 1.72 6.73 -2.39 -0.02 1.71 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -85.43 338.92 1.33 -84.10 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.65 Total: 13.36 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 5.21 Total: 20.46 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -5.24 Total: -123.67 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: 0.28 Total: -42.23 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.72 Total: 47.97 kcal Total: -85.43 1.33 -84.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985650564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.352 kcal (2) G-P(sol) polarization free energy of solvation -85.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds